[PDF] Top 20 Massively parallel sequencing and analysis of the Necator americanus transcriptome
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Massively parallel sequencing and analysis of the Necator americanus transcriptome
... N. americanus, cysteine proteases with high sequence homology to the protein cathepsin B were localized to the gut of adult worms and the corresponding mRNAs shown to be upregulated in the adult stage compared ... See full document
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Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis
... affords precise classification as well as the possibility of quantitatively assessing the tropism of the viral quasispe- cies. With respect to the classification, our results are con- cordant with the phenotype in all ... See full document
8
Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
... Each analysis con- sisted of two runs with four chains each (three hot and one cold chain), run for 1000000 generations with trees sampled every 100 ...(Phylogenetic Analysis Using Parsimony (*and other ... See full document
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Massively Parallel Sequencing (MPS) of Cell-Free Fetal DNA (cffDNA) for Trisomies 21, 18, and 13 in Twin Pregnancies
... higher possible incidence of procedure-related miscarriage and stillbirth, the possibility of sampling errors, and the in- crease in technical difficulty (Lau et al., 2013). Non-invasive prenatal diagnosis is as ... See full document
8
Annotation of pseudogenic gene segments by massively parallel sequencing of rearranged lymphocyte receptor loci
... high-throughput sequencing data derived from peripheral T cells that have undergone thymic selection in a large cohort of healthy individuals, we annotated TCRβ V gene segments as either functional, ... See full document
8
Phylogenetic Affiliation of SSU rRNA Genes Generated by Massively Parallel Sequencing: New Insights into the Freshwater Protist Diversity
... our analysis, similar to the one proposed by Jeraldo et ...NGS analysis at the genus level with the exception of amplicons sequences covering the V5–V6 region of the SSU rRNA ... See full document
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The rare and undiagnosed diseases diagnostic service – application of massively parallel sequencing in a state-wide clinical service
... functional analysis, and the initiation of economic ana- lyses and studies of patient and family experience, as well as the development of improved models of ... See full document
7
Identification of rare X-linked neuroligin variants by massively parallel sequencing in males with autism spectrum disorder
... meta- analysis of these studies, with a total of over 2500 study subjects, reveals it is extremely unlikely that there is any common variant influencing autism susceptibility, with an odds ratio of greater than ... See full document
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Development of forensic genomics research toolkits by the use of Massively Parallel Sequencing
... DNA analysis predominantly involves identification of human donors by analysis of short tandem repeats (STRs) using Capillary Electrophoresis ...in Massively Parallel Sequencing (MPS) ... See full document
269
Sequence artefacts in a prospective series of formalin-fixed tumours tested for mutations in hotspot regions by massively parallel sequencing
... CASAVA v1.8.2 was used to perform sample de- multiplexing and to convert BCL files generated from the MiSeq instrument into Fastq files containing short- read data. Using the primer sequences that are present in the ... See full document
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Targeted genomic capture and massively parallel sequencing to identify novel variants causing Chinese hereditary hearing loss
... The analysis revealed that 22 probands were negative for these mutations, and one carried the monoallelic GJB2 ...segregation analysis was performed to assess the ... See full document
8
SICTIN: Rapid footprinting of massively parallel sequencing data
... In a recent study [14] we examined the binding patterns for 38 previously published human data sets of nucleosome location and various histone modifications such as methylations and acetylations. Previously, these ... See full document
9
Gene expression profiling of oxidative stress response of C elegans aging defective AMPK mutants using massively parallel transcriptome sequencing
... comparative transcriptome analysis, however further experiments would be neces- sary in order to confirm or identify the functions of these candidate genes, and also to elucidate precise rela- tionships ... See full document
16
Bulk Processing of Text on a Massively Parallel Computer
... In summary, this improved dictionary broadcasting algorithm will loop for the unique words that are contained in the text to be indexed, look up the definition of each such word in a ser[r] ... See full document
8
Bayesian Word Alignment for Massively Parallel Texts
... Michael Cysouw, Chris Biemann, and Matthias Ongy- erth. 2007. Using Strong’s Numbers in the Bible to test an automatic alignment of parallel texts. STUF - Language Typology and Universals, 60(2):158–171. Mona Diab ... See full document
5
Lightweight Massively Parallel Suffix Array Construction
... high-performance massively parallel algorithms oriented for CUDA ...programming. Parallel primitives offered by the Thrust library are based on C++ templates adapted for CUDA ...accelerated ... See full document
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Sequencing and analysis of the gastrula transcriptome of the brittle star Ophiocoma wendtii
... Examination of the results reveals that the individual hits are mutually consistent in terms of genes identified. The brittle star data set has many times more sequences than the sea urchin gastrula UniGene set available ... See full document
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MPRAnalyze: statistical framework for massively parallel reporter assays
... on analysis approaches that either discount the inherent noise in the data ...MPRA analysis methods only address some of the types of questions MPRAs can address, such as QuASAR-MPRA [19] and mpralm [20] ... See full document
17
Accuracy and quality of massively parallel DNA pyrosequencing
... in-depth analysis of experimentally gener- ated GS20 reads by sequencing an amplicon library made from a set of clones of known ...separate sequencing runs when the reads con- taining Ns were removed ... See full document
9
Massively parallel quantization implementation using simulated annealing
... Currently, functionality of parallel image processing systems is designed in C us- ing a common framework with multiple flavors. Each employee has the freedom to some degree to use his own methods of supporting ... See full document
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