[PDF] Top 20 Multilocus Sequence Typing and Phylogenetic Analysis of Propionibacterium acnes
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Multilocus Sequence Typing and Phylogenetic Analysis of Propionibacterium acnes
... Reference phylogenetic tree. The phylogenetic analysis of concatenated complete sequences of 76 housekeeping genes con- stituting a total of 92,577 bp revealed a tree consisting of seven distinct ... See full document
8
Phylogenetic Analysis of Mycobacterium tuberculosis Strains in Wales by Use of Core Genome Multilocus Sequence Typing To Analyze Whole Genome Sequencing Data
... a phylogenetic analysis of tu- berculosis in Wales, United Kingdom, using Ridom SeqSphere software for core ge- nome multilocus sequence typing (cgMLST) analysis of whole-genome ... See full document
11
Multilocus sequence typing (and phylogenetic analysis) of Campylobacter jejuni and Campylobacter coli strains isolated from clinical cases in Greece
... A total of 68 C. jejuni and 20 C. coli clinical isolates were collected from infected children up to 14 years from 5 general hospitals of the area of Attica. All the strains were isolated from sporadic cases with gastro- ... See full document
10
An expanded multilocus sequence typing scheme for propionibacterium acnes : investigation of 'pathogenic', 'commensal' and antibiotic resistant strains
... P. acnes with acne vulgaris has a long history, although the exact role of the bacterium in the pathophysiology of the disease still remains ...P. acnes involvement in acne, although the direct or indirect ... See full document
15
Multilocus sequence typing breathes life into a microbial metagenome
... nucleotide sequence and trace back to cultivable bacteria which are absolute genetic matches this DNA, is testament to its resolving power as a typing ...strain typing methods based on DNA fragment ... See full document
9
<p>Multilocus sequence typing and <em>bla</em><sub>ESBL</sub> characterization of extended-spectrum beta-lactamase-producing <em>Escherichia coli</em> isolated from healthy humans and swine in Northern Thailand</p>
... a sequence type (ST) analysis of 212 ...a sequence analysis by conventional Sanger method, using an ABI 3730XL DNA Analyzer (Applied Biosystems, Foster City, CA, ...The sequence data ... See full document
14
Multiplex Strategy for Multilocus Sequence Typing, fla Typing, and Genetic Determination of Antimicrobial Resistance of Campylobacter jejuni and Campylobacter coli Isolates Collected in Switzerland
... unambiguous sequence data could be generated by this ...further phylogenetic analysis using the appropriate ...poses, phylogenetic analysis clearly shows the genetic relation- ships ... See full document
12
Defining a Core Genome Multilocus Sequence Typing Scheme for the Global Epidemiology of Vibrio parahaemolyticus
... V. parahaemolyticus is a natural inhabitant of a wide range of marine habitats, with a life cycle encompassing different stages as free-living organism in seawater, as a component of the microbiota of a vast range of ... See full document
16
Rapid Whole Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples
... the analysis of sequencing ...the sequence data was ...identification, multilocus sequence typing, and phylogenetic relationships for Escherichia coli and Enterococcus faecalis ... See full document
9
Multilocus Sequence Typing of the Porcine and Human Gastric Pathogen Helicobacter suis
... for multilocus sequence typing show a similar discriminatory ability, in contrast to what we found for ...distinct sequence types (STs), underlining the suitability of the proposed MLST scheme ... See full document
7
Multiplex Touchdown PCR for Rapid Typing of the Opportunistic Pathogen Propionibacterium acnes
... MAb typing approaches that have been described in the literature, and it is also less time-consuming, especially compared to methods that require multiple, separate analyses for each ...specific ... See full document
7
Characterization of Encapsulated and Noncapsulated Haemophilus influenzae and Determination of Phylogenetic Relationships by Multilocus Sequence Typing
... the analysis of congruence was performed separately for the sequences of the seven loci from these two groups of 12 ...the sequence data from locus A and then calculates the log likelihood value (⫺ln L, a ... See full document
14
Multilocus Sequence Analysis for Typing Leptospira interrogans and Leptospira kirschneri
... endonuclease analysis (4, 19), pulsed-field gel electrophoresis (7), and random amplification (6, 17), have been applied with more or less ...of phylogenetic relationships be- tween closely related strains ... See full document
5
Multilocus Sequence Typing System for Group B Streptococcus
... used multilocus enzyme electro- phoresis to study the population structure of ...of multilocus enzyme electrophoresis was more diverse and con- tained several subdivisions and numerous electrophoretic types ... See full document
7
Molecular and Phylogenetic Analysis of Human Papillomavirus Using L1 Gene in Oral Squamous Cell Carcinoma Patients in Baghdad, Iraq
... sequencing analysis was performed in Bioneer Corporation, ...(KT365828–KT365847). Phylogenetic analysis was performed via the neighbor-joining method using the Molecular Evolutionary Genetics ... See full document
9
Comparing Pulsed Field Gel Electrophoresis with Multilocus Sequence Typing, spa Typing, Staphylococcal Cassette Chromosome mec (SCCmec) Typing, and PCR for Panton Valentine Leukocidin, arcA, and opp3 in Methicillin Resistant Staphylococcus aureus Isolates at a U S Medical Center
... Methicillin-resistant Staphylococcus aureus (MRSA) has become a common cause of skin infections and invasive infections in community dwellers in the United States since the late 1990s. Isolates characterized as USA300 by ... See full document
6
Frequency and typing of Propionibacterium acnes in prostate tissue obtained from men with and without prostate cancer
... P. acnes type I [15, ...P. acnes is an inducer of in- flammatory factors such as caspase-1 and reactive oxygen species, giving further support to the suggestion that a sustained ...P. acnes infection ... See full document
10
Multilocus sequence typing (MLST), porA and flaA typing of Campylobacter jejuni isolated from cats attending a veterinary clinic
... selected multilocus sequence typing (MLST) ...into sequence types (ST) which in turn can be grouped into clonal complexes (CC) ...with typing of flaA and porA sequences ... See full document
6
Multilocus Sequence Typing Scheme for Enterococcus faecium
... approximately equal numbers of isolates and both comprised VREF and VSEF isolates. The significance of the observed bifuractions is strongly supported by bootstrap analysis. The average numbers of nucleotide ... See full document
10
Multilocus Sequence Typing System forCampylobacter jejuni
... Choice of loci. A number of candidate loci, encoding enzymes responsible for intermediary metabolism, were identified by searching the C. jejuni genome database (http:www.sanger.ac.uk/Projects/C_jejuni/) (26) with gene ... See full document
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