• No results found

Future Directions

4 Summary and Conclusions

4.6 Future Directions

The novel ESI MS studies described in this thesis have opened many avenues for further study of MT and its roles in the homeostasis of essential metals, detoxification of toxic metals, and in protection against oxidative stress. Future studies should attempt to provide concrete evidence for the potential structures detailed in Figure 4.1. Crystal structures of Zn5-MT, Zn6-MT, and Zn7-MT would greatly impact the understanding of

the structure, and therefore, function of metallothioneins in the homeostasis of zinc. In addition, because terminal metal-thiolate bonds are thought to be shorter than bridging bonds, a difference in M-S bond length may be observed in XAFS studies of the terminally coordinated sites in Zn5-MT compared with the clustered binding sites in Zn7-

MT. With the understanding that obtaining a crystal structure is no small task, there may be other ways to investigate the stable Zn5-MT and its potential role in buffering zinc

concentrations within a cell. For example, the available cysteines can be counted using a covalent cysteine modifier, parabenzoquinone, which has been used previously to investigate the structure of apo-MT and the accessibility of partially metallated MT (130,

218). Modification of a cysteine with benzoquinone results in a mass shift of 108.09 Da from the mass of the protein and is thus easily identified in a deconvoluted mass spectrum. If the Zn2+ in Zn5-MT are indeed coordinated only by terminal cysteines, there

should be no sulfurs available to bind the benzoquinone. In fact, the use of benzoquinone as a modifier of available cysteines may aid in the elucidation of the various intermediate structures in the metallation pathway of MT.

Further investigation into the significance of the Zn5-rhMT intermediate species, through

interactions of Zn7-rhMT with Zn2+-dependent apo-enzymes, is also required. If

formation of a Zn5-species permits donation to apo-enzymes with binding affinities on

the order of 1011 M-1, Zn7-MT should readily donate two Zn2+. In addition, a sample of

100% Zn5-MT should readily accept two Zn2+ from Zn2+ transport proteins with lower

KFs than the sixth and seventh binding sites in βα-rhMT (on the order of 1010 M-1).

Now that the metallation mechanism for Zn2+ has been well characterized, with non- cooperative binding and a stable Zn5-rhMT intermediate, similar experiments are

required to decipher the binding mechanism of the other essential metal often bound by MT in vivo, Cu+. Copper coordination is different from that of Zn2+ (digonal or trigonal vs. tetrahedral) and therefore, the metallation pathway is not expected to be identical. It would be of interest to investigate the existence of an intermediate Cu-MT species that coordinates the Cu+ using only terminal cysteines. Investigation of the Cu+ metallation of

MT would be slightly more difficult than that of Zn2+ because not only will the twenty cysteinyl sulfurs oxidize, but so will the Cu+ if exposed to oxygen.

The two-domain structure of many metallothioneins is thought to allow the protein to function simultaneously in both Cu+ and Zn2+ homeostasis. Future metallation studies in which metallothionein is exposed to increasing amounts of both Cu+ and Zn2+ are needed to determine if the metallation pathway for metallothionein is different in the presence of both metals. In particular, a competition experiment in which the domain peptides compete for Cu+ and Zn2+ may give some indication of any domain preference for these metals. However, such an experiment may not be easily monitored by ESI MS because the masses of copper and zinc are quite close (63.55 and 65.38 g/mol, respectively).

References

1. Frausto da Silva, J. J. R., and Williams, R. J. P. (2001) The Biological Chemistry of the Elements, 2nd ed., Oxford University Press, New York.

2. Waldron, K. J., Rutherford, J. C., Ford, D., and Robinson, N. J. (2009) Metalloproteins and metal sensing, Nature460: 823-830.

3. Dupont, C. L., Yang, S., Palenik, B., and Bourne, P. E. (2006) Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry, Proc. Natl. Acad. Sci. U S A103: 17822-17827.

4. Robinson, N. J., Procter, C. M., Connolly, E. L., and Guerinot, M. L. (1999) A ferric-chelate reductase for iron uptake from soils, Nature397: 694-697.

5. Palmer, C. M., and Guerinot, M. L. (2009) Facing the challenges of Cu, Fe and Zn homeostasis in plants, Nat. Chem. Biol.5: 333-340.

6. Decaria, L., Bertini, I., and Williams, R. J. P. (2010) Zinc proteomes, phylogenetics and evolution, Metallomics2: 706-709.

7. Decaria, L., Bertini, I., and Williams, R. J. P. (2011) Copper proteomes, phylogenetics and evolution, Metallomics3: 56-60.

8. Wilson, C. J., Apiyo, D., and Wittung-Stafshede, P. (2004) Role of cofactors in metalloprotein folding, Q. Rev. Biophys.37: 285-314.

9. Ferreira, K. N., Iverson, T. M., Maghlaoui, K., Barber, J., and Iwata, S. (2004) Architecture of the photosynthetic oxygen-evolving center, Science 303: 1831- 1838.

10. McEvoy, J. P., and Brudvig, G. W. (2006) Water-splitting chemistry of photosystem II, Chem. Rev.106: 4455-4483.

11. Sigel, H., (Ed.) (1978) Iron in Model and Natural Compounds, Metal Ions in Biological Systems Vol. 7, Marcel Dekker, Inc.; New York and Basal.

12. Terwilliger, N. B. (1998) Functional adaptations of oxygen-transport proteins, J. Exp. Biol.201: 1085-1098.

13. Sigel, H., and Sigel, A., (Eds.) (1983) Zinc and Its Role in Biology and Nutrition, Metal Ions in Biological Systems Vol. 15, Marcel Dekker, Inc; New York and Basel.

14. Dayan, A. D., and Paine, A. J. (2001) Mechanisms of chromium toxicity, carcinogenicity and allergenicity: Review of the literature from 1985 to 2000,

Hum. Exp. Toxicol.20: 439-451.

15. Sigel, H., and Sigel, A., (Eds.) (1986) Concepts on Metal Ion Toxicity, Metal Ions in Biological Systems Vol. 20, Marcel Dekker, Inc; New York and Basel.

16. Martinez-Finley, E. J., Chakraborty, S., Fretham, S. J. B., and Aschner, M. (2012) Cellular transport and homeostasis of essential and nonessential metals,

17. Moulis, J.-M. (2010) Cellular mechanisms of cadmium toxicity related to the homeostasis of essential metals, Biometals23: 877-896.

18. Bressler, J., Kim, K., Chakraborti, T., and Goldstein, G. (1999) Molecular mechanisms of lead neurotoxicity, Neurochem. Res.24: 595-600.

19. Goyer, R. A. (1997) Toxic and essential metal interactions, Annu. Rev. Nutr. 17: 37-50.

20. Mandal, B. K., and Suzuki, K. T. (2002) Arsenic round the world: A review,

Talanta58: 201-235.

21. Rosen, B. R., and Liu, Z. (2009) Transport pathways for arsenic and selenium: A minireview, Environ. Int.35: 512-515.

22. Nielsen, F. H. (1991) Nutritional requirements for boron, silicon, vanadium, nickel, and arsenic: Current knowledge and speculation, FASEB J.5: 2661-2667. 23. Prasad, M. N. V. (1995) Cadmium toxicity and tolerance in vascular plants,

Environ. Exp. Bot.35: 525-545.

24. Evans, G. W. (1973) Copper homeostasis in the mammalian system, Physiol. Rev. 53: 535-570.

25. Fukada, T., Yamasaki, S., Nishida, K., Murakami, M., and Hirano, T. (2011) Zinc homeostasis and signaling in health and diseases, J. Biol. Inorg. Chem.16: 1123- 1134.

26. Tandara, L., and Salamunic, I. (2012) Iron metabolism: Current facts and future directions, Biochem. Med.22: 311-328.

27. Beinert, H. (1997) Copper A of cytochrome c oxidase, a novel, long-embattled, biological electron-transfer site, Eur. J. Biochem.245: 521-532.

28. DeFeo, C. J., Aller, S. G., Siluvai, G. S., Blackburn, N. J., and Unger, V. M. (2009) Three-dimensional structure of the human copper transporter hCTR1,

Proc. Natl. Acad. Sci. U S A106: 4237-4242.

29. Gonzalez-Guerrero, M., and Arguello, J. M. (2008) Mechanism of Cu+- transporting ATPases: Soluble Cu+ chaperones directly transfer Cu+ to

transmembrane transport sites, Proc. Natl. Acad. Sci. U S A105: 5992-5997. 30. Harrison, M. D., Jones, C. E., Solioz, M., and Dameron, C. T. (2000) Intracellular

copper routing: The role of copper chaperones, Trends Biochem. Sci.25: 29-32. 31. Hoeschele, J. D., Turner, J. E., and England, M. W. (1991) Inorganic concepts

relevant to metal binding, activity, and toxicity in a biological system, Sci. Total Environ.109-110: 477-492.

32. Pearson, R. G. (1963) Hard and soft acids and bases, J. Am. Chem. Soc.85: 3533- 3539.

33. Pearson, R. G. (1966) Acids and bases, Science151: 172-177.

34. Jorgensen, C. K. (1975) Continuum effects indicated by hard and soft anti-bases (Lewis acids) and bases, Top. Curr. Chem.: 1-66.

35. Gray, H. B., Malmstrom, B. G., and Williams, R. J. P. (2000) Copper coordination in blue proteins, J. Biol. Inorg. Chem.5: 551-559.

36. Finney, L. A., and O'Halloran, T. V. (2003) Transition metal speciation in the cell: Insights from the chemistry of metal ion receptors, Science300: 931-936. 37. Christianson, D. W. (1991) Structural Biology of Zinc, In Advances in Protein

Chemistry, Metalloproteins: Structural Aspects, pp 281-355, Academic Press, Inc., San Diego.

38. Vallee, B. L., and Auld, D. S. (1990) Active-site zinc ligands and activated H2O

of zinc enzymes, Proc. Natl. Acad. Sci. U S A87: 220-224.

39. Rehm, H. (2006) Chapter 2: Ligand Binding, In Protein Biochemistry and Proteomics, Elsevier, San Diego.

40. Koshland, D. E., and Hamadani, K. (2002) Proteomics and models for enzyme cooperativity, J. Biol. Chem.277: 46841-46844.

41. Eichler, D. C. (2006) Chapter 7: Protein Structure and Function, In Medical Biochemistry: Pearls of Wisdom, Jones & Bartlett Publishers Inc., Sudbury. 42. Kanao, T., Fukui, T., Atomi, H., and Imanaka, T. (2002) Kinetic and biochemical

analyses on the reaction mechanism of a bacterial ATP-citrate lyase, Eur. J. Biochem.269: 3409-3416.

43. Vallee, B. L., and Falchuk, K. H. (1993) The biochemical basis of zinc physiology, Physiol. Rev.73: 79-118.

44. Prasad, A. S. (1995) Zinc - An overview, Nutrition11: 93-99.

45. Beyersmann, D., and Haase, H. (2001) Functions of zinc in signaling, proliferation and differentiation of mammalian cells, Biometals14: 331-341. 46. Eide, D. J. (2004) The SLC39 family of metal ion transporters, Pflugers Arch.

Eur. J. Physiol.447: 796-800.

47. Yamasaki, S., Hasegawa, A., Hojyo, S., Ohashi, W., Fukada, T., Nishida, K., and Hirano, T. (2012) A novel role of the L-type calcium channel alpha(1D) subunit as a gatekeeper for intracellular zinc signaling: Zinc wave, PLOS7.

48. Lee, D. K., Geiser, J., Dufner-Beattie, J., and Andrews, G. K. (2003) Pancreatic metallothionein-l may play a role in zinc homeostasis during maternal dietary zinc deficiency in mice, J. Nutr.133: 45-50.

49. Lichtlen, P., and Schaffner, W. (2001) Putting its fingers on stressful situations: The heavy metal-regulatory transcription factor MTF-1, Bioessays23: 1010-1017. 50. Outten, C. E., and O'Halloran, T. V. (2001) Femtomolar sensitivity of

metalloregulatory proteins controlling zinc homeostasis, Science292: 2488. 51. Prasad, A. S. (2012) Discovery of human zinc deficiency: 50 years later, J. Trace

52. Feinauer, C. J., Hofmann, A., Goldt, S., Liu, L., Mate, G., and Heermann, D. W. (2013) Zinc Finger Proteins and the 3D Organization of Chromosomes, In

Organisation of Chromosomes (Donev, R., Ed.), pp 67-117.

53. Razin, S. V., Borunova, V. V., Maksimenko, O. G., and Kantidze, O. L. (2012) Cys2His2 zinc finger protein family: Classification, functions, and major members, Biochemistry-Moscow77: 217-226.

54. Eide, D. J. (2006) Zinc transporters and the cellular trafficking of zinc, Biochim. Biophys. Acta-Mol. Cell Res.1763: 711-722.

55. Palmiter, R. D., and Findley, S. D. (1995) Cloning and functional-characterization of a mammalian zinc transporter that confers resistance to zinc, EMBO J.14: 639- 649.

56. Hantke, K. (2005) Bacterial zinc uptake and regulators, Curr. Opin. Microbiol.8: 196-202.

57. Patzer, S. I., and Hantke, K. (1998) The ZnuABC high-affinity zinc uptake system and its regulator Zur in Escherichia coli, Mol. Microbiol.28: 1199-1210.

58. Zhao, H., and Eide, D. (1996) The yeast ZRT1 gene encodes the zinc transporter protein of a high-affinity uptake system induced by zinc limitation, Proc. Natl. Acad. Sci. U S A93: 2454-2458.

59. Zhao, H., and Eide, D. (1996) The ZRT2 gene encodes the low affinity zinc transporter in Saccharomyces cerevisiae, J. Biol. Chem.271: 23203-23210.

60. Eide, D., Broderius, M., Fett, J., and Guerinot, M. L. (1996) A novel iron- regulated metal transporter from plants identified by functional expression in yeast, Proc. Natl. Acad. Sci. U S A93: 5624-5628.

61. Gaither, L. A., and Eide, D. J. (2001) The human ZIP1 transporter mediates zinc uptake in human K562 erythroleukemia cells, J. Biol. Chem.276: 22258-22264. 62. Dufner-Beattie, J., Langmade, S. J., Wang, F. D., Eide, D., and Andrews, G. K.

(2003) Structure, function, and regulation of a subfamily of mouse zinc transporter genes, J. Biol. Chem.278: 50142-50150.

63. Gaither, L. A., and Eide, D. (2000) Functional expression of the human hZIP2 zinc transporter, FASEB J.14: A228-A228.

64. Dufner-Beattie, J., Huang, Z. X. L., Geiser, J., Xu, W. H., and Andrews, G. K. (2005) Generation and characterization of mice lacking the zinc uptake transporter ZIP3, Mol. Cell. Biol.25: 5607-5615.

65. Dufner-Beattie, J., Wang, F. D., Kuo, Y. M., Gitschier, J., Eide, D., and Andrews, G. K. (2003) The acrodermatitis enteropathica gene ZIP4 encodes a tissue- specific, zinc-regulated zinc transporter in mice, J. Biol. Chem. 278: 33474- 33481.

66. Kelleher, S. L., and Lonnerdal, B. (2005) Zip3 plays a major role in zinc uptake into mammary epithelial cells and is regulated by prolactin, Am. J. Physiol. Cell Physiol.288: C1042-C1047.

67. Wang, X., and Zhou, B. (2010) Dietary zinc absorption: A play of Zips and ZnTs in the gut, Iubmb Life62: 176-182.

68. Wang, F. D., Kim, B. E., Petris, M. J., and Eide, D. J. (2004) The mammalian Zip5 protein is a zinc transporter that localizes to the basolateral surface of polarized cells, J. Biol. Chem.279: 51433-51441.

69. Braun, W., Vasak, M., Robbins, A. H., Stout, C. D., Wagner, G., Kagi, J. H., and Wuthrich, K. (1992) Comparison of the NMR solution structure and the x-ray crystal structure of rat metallothionein-2, Proc. Natl. Acad. Sci. U.S.A.89: 10124- 10128.

70. Banci, L., Bertini, I., Ciofi-Baffoni, S., Poggi, L., Vanarotti, M., Tottey, S., Waldron, K. J., and Robinson, N. J. (2010) NMR structural analysis of the soluble domain of ZiaA-ATPase and the basis of selective interactions with copper metallochaperone Atx1, J. Biol. Inorg. Chem.15: 87-98.

71. Banci, L., Bertini, I., Ciofi-Baffoni, S., Su, X.-C., Miras, R., Bal, N., Mintz, E., Catty, P., Shokes, J. E., and Scott, R. A. (2006) Structural basis for metal binding specificity: the N-terminal cadmium binding domain of the P1-type ATPase CadA, J. Mol. Biol.356.

72. Kostelecky, B., Pohl, E., Vogel, A., Schilling, O., and Meyer-Klaucke, W. (2006) The crystal structure of the zinc phosphodiesterase from Escherichia coli provides insight into function and cooperativity of tRNase Z-family proteins., J. Bacteriol. 188: 1607.

73. Goroncy, A. K., Tochio, N., Tomizawa, T., Koshiba, S., Watanabe, S., Harada, T., Kigawa, T., and Yokoyama, S. Solution structure of a putative DNA-binding domain of the human solute carrier family 30 (zinc transporter) protein,

Unpublished.

74. Wan, Q., Gorzelle, B., Fairman, J., Fuente, M., Homammed, F., Dealwis, C., and Maguire, M. The soluble domain structure of the ZnTB Zn2+ efflux system,

Unpublished.

75. Nies, D. H., and Silver, S. (1995) Ion efflux systems involved in bacterial metal resistances, J. Ind. Microbiol.14: 186-199.

76. Palmiter, R. D., and Huang, L. P. (2004) Efflux and compartmentalization of zinc by members of the SLC30 family of solute carriers, Pflugers Arch. Eur. J. Physiol.447: 744-751.

77. Ford, D. (2004) Intestinal and placental zinc transport pathways, Proc. Nutr. Soc. 63: 21-29.

78. McMahon, R. J., and Cousins, R. J. (1998) Regulation of the zinc transporter ZnT-1 by dietary zinc, Proc. Natl. Acad. Sci. U S A95: 4841-4846.

79. Palmiter, R. D., Cole, T. B., Quaife, C. J., and Findley, S. D. (1996) ZnT-3, a putative transporter of zinc into synaptic vesicles, Proc. Natl. Acad. Sci. U S A93: 14934-14939.

80. Cragg, R. A., Christie, G. R., Phillips, S. R., Russi, R. M., Kury, S., Mathers, J. C., Taylor, P. M., and Ford, D. (2002) A novel zinc-regulated human zinc transporter, hZTL1, is localized to the enterocyte apical membrane, J. Biol. Chem. 277: 22789-22797.

81. Murgia, C., Vespignani, I., Cerase, J., Nobili, F., and Perozzi, G. (1999) Cloning, expression, and vesicular localization of zinc transporter Dri 27/ZnT4 in intestinal tissue and cells, Am. J. Physiol.-Gastr. L.277: G1231-G1239.

82. Suzuki, T., Ishihara, K., Migaki, H., Nagao, M., Yamaguchi-Iwai, Y., and Kambe, T. (2005) Two different zinc transport complexes of cation diffusion facilitator proteins localized in the secretory pathway operate to activate alkaline phosphatases in vertebrate cells, J. Biol. Chem.280: 30956-30962.

83. Suzuki, T., Ishihara, K., Migaki, H., Matsuura, W., Kohda, A., Okumura, K., Nagao, M., Yamaguchi-Iwai, Y., and Kambe, T. (2005) Zinc transporters, ZnT5 and ZnT7, are required for the activation of alkaline phosphatases, zinc-requiring enzymes that are glycosylphosphatidylinositol-anchored to the cytoplasmic membrane, J. Biol. Chem.280: 637-643.

84. Heuchel, R., Radtke, F., Georgiev, O., Stark, G., Aguet, M., and Schaffner, W. (1994) The transcription factor MTF-1 is essential for basal and heavy metal- induced metallothionein gene-expression, EMBO J.13: 2870-2875.

85. VanZile, M. L., Cosper, N. J., Scott, R. A., and Giedroc, D. P. (2000) The zinc metalloregulatory protein Synechococcus PCC7942 SmtB binds a single zinc ion per monomer with high affinity in a tetrahedral coordination geometry,

Biochemistry39: 11818-11829.

86. Wang, D., Hosteen, O., and Fierke, C. A. (2012) ZntR-mediated transcription of

zntA responds to nanomolar intracellular free zinc, J. Inorg. Biochem. 111: 173- 181.

87. Zhao, H., Butler, E., Rodgers, J., Spizzo, T., Duesterhoeft, S., and Eide, D. (1998) Regulation of zinc homeostasis in yeast by binding of the ZAP1 transcriptional activator to zinc-responsive promoter elements, J. Biol. Chem.273: 28713-28720. 88. Zhao, H., and Eide, D. J. (1997) Zap1p, a metalloregulatory protein involved in

zinc-responsive transcriptional regulation in Saccharomyces cerevisiae, Mol. Cell. Biol.17: 5044-5052.

89. Guerinot, M. L. (2000) The ZIP family of metal transporters, Biochim. Biophys.

Acta-Biomembranes1465: 190-198.

90. Bird, A. J., Zhao, H., Luo, H., Jensen, L. T., Srinivasan, C., Evans-Galea, M., Winge, D. R., and Eide, D. J. (2000) A dual role for zinc fingers in both DNA binding and zinc sensing by the Zap1 transcriptional activator, EMBO J. 19: 3704-3713.

91. Margoshes, M., and Vallee, B. L. (1957) A cadmium protein from equine kidney cortex, J. Am. Chem. Soc.79: 4813.

92. Gehrig, P. M., You, C., Dallinger, R., Gruber, C., Brouwer, M., Kagi, J. H. R., and Hunziker, P. E. (2000) Electrospray ionization mass spectrometry of zinc, cadmium, and copper metallothioneins: Evidence for metal-binding cooperativity,

Protein Science9: 395-402.

93. Kagi, J. H. R., and Vallee, B. L. (1961) Metallothionein: A cadmium and zinc- containing protein from equine renal cortex, J. Biol. Chem.236: 2435-2442. 94. Stillman, M. J. (1995) Metallothioneins, Coord. Chem. Rev.144: 461-511.

95. Chan, J., Huang, Z., Merrifield, M. E., Salgado, M. T., and Stillman, M. J. (2002) Studies of metal binding reactions in metallothionein by spectroscopic, molecular biology, and molecular modeling techniques, Coord. Chem. Rev.233: 319-339. 96. Tsunoo, H., Kino, K., Nakajima, H., Hata, A., Huang, I., and Yoshida, A. (1978)

Mouse liver metallothioneins. Purification, molecular weight, amino acid composition, and metal content, J. Biol. Chem.253: 4172-4174.

97. Robinson, N. J. (2008) A bacterial copper metallothionein, Nat. Chem. Biol. 4: 582-583.

98. Tucker, S. L., Thornton, C. R., Tasker, K., Jacob, C., Giles, G., Egan, M., and Talbot, N. J. (2004) A fungal metallothionein is required for pathogenicity of

Magnaporthe grisea, Plant Cell16: 1575-1588.

99. King, G., Price, D., Rice, W., and Joshi, J. G. (1982) Interrelationship of zinc, ferritin, metallothionein and small molecular-weight components in plants and animals, Fed. Proc.41: 641-641.

100. Galdes, A., Vasak, M., Hill, H. A. O., and Kagi, J. H. R. (1978) 1H NMR spectra of metallothioneins, FEBS Lett.92: 17-21.

101. Rupp, H., Voelter, W., and Weser, U. (1974) 270 MHz proton magnetic resonance spectra of metallothionein, FEBS Lett.40: 176-179.

102. Vasak, M., Galdes, A., Hill, H. A. O., Kagi, J. H. R., Bremner, I., and Young, B. W. (1980) Investigation of the structure of metallothioneins by proton nuclear magnetic resonance spectroscopy, Biochemistry19: 416-425.

103. Kagi, J. H. R. (1993) Evolution, Structure and Chemical Activity of Class I Metallothioneins: An Overview, In Metallothionein III: Biological Roles and Medical Implications (Suzuki, K. T., Imura, N., and Kimura, M., Eds.), Advances in Life Sciences, Berlin.

104. Uchida, Y., Takio, K., Titani, K., Ihara, Y., and Tomonaga, M. (1991) The growth

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