• No results found

Genotype by environment interaction for harvest weight, growth rate and shape

3.2 Materials and methods

3.4.5 Implication for a breeding program

In the presence of GxE interaction, re-ranking of individuals occurs; superior individuals in one environment will be inferior in other environments. In this case, the question on how to optimize the breeding program to respond to multiple environment requirements is critical. In our study, a moderate GxE for daily growth coefficient, height and ellipticity traits was observed. Mulder and Bijma (2005) pointed out that when GxE interaction occurs in a breeding program, the reduction in genetic gain mainly occurs due to inaccurate selection of breeding candidates. The explicit use of sibling information to select individuals with highest breeding values from the nucleus to perform better in another environment in order to optimize a breeding program was addressed by (Mulder and Bijma, 2005). Sib selection programs enable effective selection for traits that can be recorded through killing of an animal e.g., carcass traits and traits that are difficult to measure such as diseases. In addition, they provide increased selection accuracy for traits of medium and low heritability. Based on the findings in the present study, we recommend that breeding programs for Nile tilapia incorporate sib information from production environments when production is based on monosex fish. Incorporating more information into selection index will also result in a more accurate estimation of breeding values.

3 Genotype by environment interaction

62

3.5 Conclusions

We conclude that a substantial additive genetic effect for harvest weight, growth rate and shape traits were observed that can be exploited under low input system if a breeding program is well designed. Our results show that selection for fast growth will produce thicker fish which will reach market weight earlier. We found high genetic correlations for HW trait between mixed sex and monosex groups suggesting low GxE. A significant GxE for daily growth rate and ellipticity traits between mixed sex and monosex groups was observed as indicated by low genetic correlations. We recommend that breeding programs that serve hatcheries which produce monosex fry should include information from sex reversed male sibling individuals to be combined with individual information from the breeding nucleus into a selection index to minimize the magnitude of GxE.

Acknowledgements

This study is part of the first author’s sandwich PhD study, funded by Koepon Foundation, their support is acknowledged. We would like to thank staff of Sagana Aquaculture Research Station Kenya, for providing the experimental fish, facilities and helping with the experiment.

References

Abdalla, A.A., McNabb, C.D., Batterson, T.R., 1996. Ammonia dynamics in fertilized fish ponds stocked with Nile Tilapia. Progressive. Fish Cult. 58, 117-123. Basiao, Z.U., Arago, A.L., Doyle, R.W., 2005. A farmer‐oriented Nile tilapia

(Oreochromis niloticus L.), breed improvement in the Philippines. Aquac. Res. 36, 113-119.

Bentsen, H.B., Gjerde, B., Nguyen, N.H., Rye, M., Ponzoni, R.W., de Vera, M.S. P., Bolivar, H.L., Velasco, R.R., Danting, J.C., Dionisio, E.E., 2012. Genetic improvement of farmed tilapias: Genetic parameters for body weight at harvest in Nile tilapia (Oreochromis niloticus) during five generations of testing in multiple environments. Aquaculture 338, 56-65.

Blonk, R.J.W., Komen, J., Tenghe, A., Kamstra, A., Van Arendonk, J.A.M., 2010. Heritability of shape in common sole, Solea solea, estimated from image analysis data. Aquaculture 307, 6-11.

Bocek, A., Phelps, R.P., Popma, T.J., 1992. Effect of feeding frequency on sex reversal and growth on Nile tilapia (Oreochromis niloticus). J. Appl. Aquac. 1, 97–103.

3 Genotype by environment interaction

63 Bolivar, R.B., Newkirk, G.F., 2002. Response to within family selection for body

weight in Nile tilapia (Oreochromis niloticus) using a single-trait animal model. Aquaculture 204, 371-381.

Charo-Karisa, H., 2006. Selection for growth of Nile tilapia (Oreochromis niloticus L.) in Low-input environments (PhD Thesis) Wageningen Universiteit (169 pp.).

Charo-Karisa, H., Bovenhuis, H., Rezk, M.A., Ponzoni, R.W., Van Arendonk, J.A.M., Komen, H., 2007. Phenotypic and genetic parameters for body measurements, reproductive traits and gut length of Nile tilapia (Oreochromis niloticus) selected for growth in low-input earthen ponds. Aquaculture 273, 15–23.

Charo-Karisa, H., Komen, J., Rezk, M.A., Ponzoni, R.W., van Arendonk, J.A.M., Bovenhuis, H., 2006. Heritability estimates and response to selection for growth of Nile tilapia (Oreochromis niloticus) in low-input earthen ponds. Aquaculture 261, 479–486.

Coward, K., Bromage, N., 2000. Reproductive physiology of female tilapia broodstock. Rev. Fish Biol. Fish. 10, 1-25.

Dabrowski, K., Murai, T., Becker, K., 1986. Physiological and Nutritional Aspects of Intensive Feeding of Carp. In: Billard, R., Marcel, J. (Eds.), Aquaculture of Cyprinids. INRA, Paris, pp. 55-70.

Damien, D., Eddy, G., Marie, C.H., Charles, M., Pierre, B., Jean, F.B., 2003. Production of a high percentage of male offspring with a natural androgen, 11h-hydroxyandrostenedione (11hOHA4), in Florida red tilapia. Aquaculture 216, 55–65.

Dupont-Nivet, M., Karahan-Nomm, B., Vergnet, A., Merdy, O., Haffray, P., Chavanne, H., Chatain, B., Vandeputte, M., 2010. Genotype by environment interactions for growth in European seabass (Dicentrarchus

labrax) are large when growth rate rather than weight is considered.

Aquaculture 306, 365-368.

Eknath, A.E., Reyes, R.A., Bolivar, H.L., De Vera, M.P., Danting, J.C., Dionisio, E.E., Longalong, F.M., 1995. Genetic improvement of farmed tilapias: estimation of genetic variation and heritability for age and size at first spawning in Nile tilapia (Oreochromis niloticus). Aquaculture 137, 279-280. Eknath, A.E., Bentsen, H.B., Ponzoni, R.W., Rye, M., Nguyen, N.H., Thodesen, J., Gjerde, B., 2007. Genetic improvement of farmed tilapias: composition and genetic parameters of a synthetic base population of Oreochromis

3 Genotype by environment interaction

64

Falconer, D.S., Mackay, T.F., Frankham, R., 1996. Introduction to Quantitative Genetics (4th edn). Longman Group Ltd., Essex, UK (464 pp.).

Fessehaye, Y., El-bialy, Z., Rezk, M.A., Crooijmans, R., Bovenhuis, H., Komen, H., 2006. Mating systems and male reproductive success in Nile tilapia

(Oreochromis niloticus) in breeding hapas: A microsatellite analysis.

Aquaculture 256, 148-158.

Gilmour, A.R., Gogel, B., Cullis, B., Thompson, R., 2009. ASReml user guide release 3.0. VSN International Ltd, Hemel Hempstead, UK.

Gjedrem, T., 1983. Genetic variation in quantitative traits and selective breeding in fish and shellfish. Aquaculture 33, 51-72.

Henryon, M., Jokumsen, A., Berg, P., Lund, I., Pedersen, P.B., Olesen, N.J., Slierendrecht, W.J., 2002. Genetic variation for growth rate, feed conversion efficiency, and disease resistance exists within a farmed population of rainbow trout. Aquaculture 209, 59-76.

Hughes, D.G., Behrends, L.L., 1983. Mass production of Tilapia nilotica seed in suspended net enclosures. in: Fishelson, L.,Yaron, Z. (Ed.), International Symposium on Tilapia in Aquaculture, Tel Aviv University, Tel Aviv, Israel, pp. 394-401.

Kause, A., Ritola, O., Paananen, T., Mäntysaari, E., Eskelinen, U., 2003. Selection against early maturity in large rainbow trout (Oncorhynchus mykiss): the quantitative genetics of sexual dimorphism and genotype-by-environment interactions. Aquaculture 228, 53-68.

Khaw, H., 2015. Cooperative and uniform fish?: social interactions and variability in live body weight in the GIFT strain (Nile tilapia, Oreochromic niloticus) in Malaysia (PhD Thesis) Wageningen Universiteit (161 pp.).

Khaw, H. L., Bovenhuis, H., Ponzoni, R.W., Rezk, M.A., Charo-Karisa, H., Komen, H., 2009. Genetic analysis of Nile tilapia (Oreochromis niloticus) selection line reared in two input environments. Aquaculture 294, 37-42.

Kolmodin, R., Strandberg, E., Madsen, P., Jensen, J., Jorjani, H., 2002. Genotype by environment interaction in Nordic dairy cattle studied using reaction norms. Acta Agric. Scand. Sect. A Anim. Sci. 52, 11-24.

Kolstad, K., Thorland, I., Refstie, T., Gjerde, B., 2006. Genetic variation and genotype by location interaction in body weight, spinal deformity and sexual maturity in Atlantic cod (Gadus morhua) reared at different locations off Norway. Aquaculture 259, 66-73.

Le Boucher, R., Quillet, E., Vandeputte, M., Lecalvez, J.M., Goardon, L., Chatain, B., Médale, F., Dupont-Nivet, M., 2011. Plant-based diet in rainbow trout

3 Genotype by environment interaction

65 main production traits when fish are fed marine vs. plant-based diets from the first meal?. Aquaculture 321, 41-48.

Lone, K.P., Ridha, M.T., 1993. Sex reversal and growth of Oreochromis spilurus (Gunther) in brackish and sea water by feeding 17 α-methyltestosterone. Aquac. Fish. Manag. 24, 593–602.

Luan, T.D., Olesen, I., Ødegård, J., Kolstad, K., Dan, N.C., 2008. Genotype by Environment Interaction for Harvest Body Weight and Survival of Nile tilapia (Oreochromis niloticus) in Brackish and Fresh Water Ponds. In Proceedings from the Eight International Symposium on Tilapia Aquaculture, Vol. 1. ag.arizona.edu, Cairo, pp. 231-240.

Lynch, M., Walsh, B., 1998. Genetics and Analysis of Quantitative Traits. Sinauer Associates, Inc., U.S.A. pp. 980.

Maluwa, A.O., Gjerde, B., Ponzoni, R.W., 2006. Genetic parameters and genotype by environment interaction for body weight of Oreochromis shiranus. Aquaculture 259, 47-55.

Mulder, H., Bijma, P., 2005. Effects of genotype× environment interaction on genetic gain in breeding programs. J. Anim. Sci. 83, 49-61.

Norhidayat, K., Nguyen, H.N., Hamzah, A., Ponzoni, R.W., 2009. Growth performance of mixed sex, hormonally sex reversed and progeny of YY male tilapia of the GIFT strain, (Oreochromis niloticus). Aquac. Res. 40, 720-728.

Okoko, M., 1996. Effect of 17 α- methyltestosterone concentrations on the sex ratio, and gonadal development of Nile tilapia Oreochromis niloticus (Master’s Thesis) Auburn University, AL, USA (234 pp.).

Omasaki, S.K., van Arendonk, J.A.M., Kahi, A.K., Komen, H., 2016. Defining a breeding objective for Nile tilapia that takes into account the diversity of smallholder production systems. J. Anim. Breed.Genet. 133, (2016) 404– 413.

Pham, A.T., David C.L., Graham, C.M., 1998. Genotypic effects on comparative growth performance of all-male tilapia (Oreochromis niloticus L.). Aquaculture 159, 293-302.

Phelps, R.P., Popma, T.J., 2000. Sex reversal of tilapia. In: B.A. Costa-Pierce, J.E. Rakocy (Eds.), Tilapia Aquaculture in the Americas, Vol. 2. The World Aquaculture Society, Baton Rouge, Louisiana, USA, pp. 34-59.

Phelps R.P., Cole, W., Katz, T., 1992. Effect of fluoxymesterone on sex ratio and growth of Nile tilapia (Oreochromis niloticus L.). Aquac. Res. 23, 405–410.

3 Genotype by environment interaction

66

Phelps, R.P., Arana, E., Argue, B., 1993. Relationship between the external morphology and gonads of androgen treated Oreochromis niloticus. J. Appl. Aquac. 2, 103-108.

Ponzoni, R.W., Nguyen, N.H., Khaw, H.L., Hamzah, A., Bakar, K.R.A., Yee, H.Y., 2011. Genetic improvement of Nile tilapia (Oreochromis niloticus) with special reference to the work conducted by the WorldFish Center with the GIFT strain. Rev. Aquac. 3, 27-41.

Popma, T.J., Green, B.W., 1990. Aquaculture production manual: sex reversal of tilapia in earthen ponds. Research and Development Series No. 35. International Center for Aquaculture, Alabama Agricultural Experiment Station, Auburn University, AL, USA (15 pp.).

Popma, T.J., Lovshin, L.L., 1995. Worldwide Prospects for Commercial Production of Tilapia. International Center for Aquaculture and Aquatic Environments, Department of Fisheries and Allied Aquacultures, Auburn University, Alabama p. 36849 (42 pp.).

Quillet, E., Le Guillou, S., Aubin, J., Labbé, L., Fauconneau, B., Médale, F., 2007. Response of a lean muscle and a fat muscle rainbow trout (Oncorhynchus

mykiss) line on growth, nutrient utilization, body composition and carcass

traits when fed two different diets. Aquaculture 269, 220-231.

Rasband, W.S., 2008. ImageJ. U.S. National Institutes of Health, Bethesda, Maryland, USA.

Rutten, M.J., Bovenhuis, H., Komen, H., 2005. Genetic parameters for fillet traits and body measurements in Nile tilapia (Oreochromis niloticus L.). Aquaculture 246, 125-132.

Rutten, M.J., Komen, H., Bovenhuis, H., 2005b. Longitudinal genetic analysis of Nile tilapia (Oreochromis niloticus L.) body weight using a random regression model. Aquaculture 246, 101-113.

Sae-Lim, P., 2013. One size fits all?. Optimization of Rainbow Trout Breeding Program Under Diverse Producer Preferences and Genotype-by- enviroment Interaction (PhD Thesis) Wageningen Universiteit (200 pp.). Sae-Lim, P., Komen, J., Kause, A., Mulder, H.A., 2014. Identifying environmental

variables explaining genotype-by-environment interaction for body weight of rainbow trout (Onchorynchus mykiss): reaction norm and factor analytic models. Genet. Sel. Evol. 46,16. 10.1186/1297-9686-46-16.

Saillant, E., Dupont-Nivet, M., Haffray, P., Chatain, B., 2006. Estimates of heritability and genotype–environment interactions for body weight in sea bass

(Dicentrarchus labrax L.) raised under communal rearing conditions.

3 Genotype by environment interaction

67 SAS Institute Inc.: 1997. SAS/STAR® Software: Changes and Enhancements through

Release 6.12 (USA, Cary).

Schreiber, S., Focken, U., Becker, K., 1998. Individually reared female Nile tilapia

(Oreochromis niloticus) can grow faster than males. J. Appl. Ichthyol. 14,

43–47.

Thodesen, J., Rye, M., Wang, Y.X., Yang, K.S., Bentsen, H.B., Gjedrem, T., 2011. Genetic improvement of tilapias in China: Genetic parameters and selection responses in growth of Nile tilapia (Oreochromis niloticus) after six generations of multi-trait selection for growth and fillet yield. Aquaculture 322, 51-64.

Trọng, T.Q., Mulder, H.A., van Arendonk, J.A.M., Komen, H., 2013. Heritability and genotype by environment interaction estimates for harvest weight, growth rate, and shape of Nile tilapia (Oreochromis niloticus) grown in river cage and VAC in Vietnam. Aquaculture 384, 119-127.

Trọng, T.Q., van Arendonk, J.A.M., Komen, H., 2013. Genetic parameters for reproductive traits in Nile tilapia (Oreochromis niloticus): I. Spawning success and time to spawn. Aquaculture 416-417, 57-64.

Tsadik, G.G., Bart, A.N., 2007. Effect of feeding stocking density and water-flow rate on fecundity, spawning frequency and egg quality of Nile tilapia

(Oreochromis niloticus L.). Aquaculture 272, 380–388.

van der Werf, J., Graser, H.U., Frankham, R., Gondro, C. (Eds.), 2009. Adaptation and Fitness in Animal Populations: Evolution and Breeding Perspectives on Genetic Resource Management. Springer Science+Business Media B.V., Springer, Netherlands (258 pp.).

World Bank., 2013. Fish to 2030. Prospects for Fisheries and Aquaculture. Agriculture and Envi ronmental Services Discussion Paper 3. World Bank Report, number 83177-GLB (102 pp.).

WorldFish Center, 2004. GIFT technology manual: an Aid to Tilapia Selective Breeding, (Penang, Malaysia).

3 Genotype by environment interaction

4

Economic values of growth rate, feed intake,