• No results found

0 15 120 0 15 120 Ste7-Wt Ste7-L 194 S

5-FOA Sensitive

0 15 120 0 15 120 Ste7-Wt Ste7-L 194 S

min 100 80 60 40 20 0 120 Mpk1 Kss1 Fus3 Mpk1 Kss1 Fus3 Ste7-Wt Ste7-L194S min 0 15 120 0 15 120 0 15 120 0 15 120 Ste7-Wt Ste7-L194S min 2.5 2.0 1.5 1.0 0.5 0

Figure 3.6: Relative stability of Tec1 in yeast expressing wild-type Ste7 versus Ste7- L194S at basal levels and after exposure to mating pheromone. (A) Representative blots showing the relative amount of Tec1 in yeast strains expressing wild-type Ste7 and Ste7- L194S without mating pheromone (uninduced) and with mating pheromone (induced with 50nM α-factor). Tec1 was tagged with a 13x-myc tag and detected with polyclonal anti- myc antibodies. Tubulin was used as a loading control and detected with anti-tubulin antibodies. (B) Graph showing Tec1 degradation upon exposure to mating pheromone in yeast cells expressing only wild-type Ste7. Tec1 levels in uninduced wild-type Ste7 are represented by an open triangle (U), uninduced Ste7-L194S are represented by an open

circle (○), induced wild-type Ste7are represented by a closed circle (●), and induced Ste7-L194S are represented by a closed triangle (▲). (C) Duplicate blots of Tec1 in uninduced yeast expressing wild-type Ste7 and Ste7-L194S. The relative amounts of Tec1 to Tubulin are shown below each lane.

0 30 60 90 120 0.0 0.2 0.4 0.6 0.8 1.0 1.2 1.4 Time (min) Ste7 0 30 60 120 Ste7-L194S 0 30 60 120 Tub1 Tec1 Tub1 Tec1 min 1 2 3 4 5 6 7 8 A. B. Tub1 Tec1 Tec1 Tub1 2.0 1.5 1.5 1.7 C.

Figure 6.7: Models of Mpk1 activation. See text for explanation. (A) Wild-type Ste7. (B) Direct mechanism of phosphorylation of Mpk1 by Ste7-L194S. (C) Indirect

References

1. Alani, E., L. Cao, and N. Kleckner. 1987. A method for gene disruption that allows repeated use of URA3 selection in the construction of multiply disrupted yeast strains. Genetics 116:541-5.

2. Andersson, J., D. M. Simpson, M. Qi, Y. Wang, and E. A. Elion. 2004.

Differential input by Ste5 scaffold and Msg5 phosphatase route a MAPK cascade to multiple outcomes. Embo J 23:2564-76.

3. Bao, M. Z., M. A. Schwartz, G. T. Cantin, J. R. Yates, 3rd, and H. D. Madhani. 2004. Pheromone-dependent destruction of the Tec1 transcription factor is required for MAP kinase signaling specificity in yeast. Cell 119:991- 1000.

4. Bardwell, L., J. G. Cook, V. Depak, D. M. Baggott, A. R. Martinez, and J. Thorner. 1998. Repression of yeast Ste12 transcription factor by direct binding of unphosphorylated Kss1 MAPK and its regulation by the Ste7 MEK. Genes Dev 12:2887-98.

5. Bardwell, L., J. G. Cook, D. Voora, D. M. Baggott, A. R. Martinez, and J. Thorner. 1998. Repression of yeast Ste12 transcription factor by direct binding of unphosphorylated Kss1 MAPK and its regulation by the Ste7 MEK. Genes Dev 12:2887-98.

6. Bardwell, L., J. G. Cook, J. X. Zhu-Shimoni, D. Voora, and J. Thorner. 1998. Differential regulation of transcription: repression by unactivated mitogen-

activated protein kinase Kss1 requires the Dig1 and Dig2 proteins. Proc Natl Acad Sci U S A 95:15400-5.

7. Baur, M., R. K. Esch, and B. Errede. 1997. Cooperative binding interactions required for function of the Ty1 sterile responsive element. Mol Cell Biol 17:4330-7.

8. Breitkreutz, A., L. Boucher, and M. Tyers. 2001. MAPK specificity in the yeast pheromone response independent of transcriptional activation. Curr Biol 11:1266-71.

9. Buehrer, B. M., and B. Errede. 1997. Coordination of the mating and cell integrity mitogen-activated protein kinase pathways in Saccharomyces cerevisiae. Mol Cell Biol 17:6517-25.

10. Cadwell, R. C., and G. F. Joyce. 1992. Randomization of genes by PCR mutagenesis. PCR Methods Appl 2:28-33.

11. Choi, K. Y., B. Satterberg, D. M. Lyons, and E. A. Elion. 1994. Ste5 tethers multiple protein kinases in the MAP kinase cascade required for mating in S. cerevisiae. Cell 78:499-512.

12. Chou, S., L. Huang, and H. Liu. 2004. Fus3-regulated Tec1 degradation through SCFCdc4 determines MAPK signaling specificity during mating in yeast. Cell 119:981-90.

13. Chou, S., S. Lane, and H. Liu. 2006. Regulation of mating and filamentation genes by two distinct Ste12 complexes in Saccharomyces cerevisiae. Mol Cell Biol 26:4794-805.

14. Cook, J. G., L. Bardwell, S. J. Kron, and J. Thorner. 1996. Two novel targets of the MAP kinase Kss1 are negative regulators of invasive growth in the yeast Saccharomyces cerevisiae. Genes Dev 10:2831-48.

15. Cook, J. G., L. Bardwell, and J. Thorner. 1997. Inhibitory and activating functions for MAPK Kss1 in the S. cerevisiae filamentous-growth signalling pathway. Nature 390:85-8.

16. Cullen, P. J., W. Sabbagh, Jr., E. Graham, M. M. Irick, E. K. van Olden, C. Neal, J. Delrow, L. Bardwell, and G. F. Sprague, Jr. 2004. A signaling mucin at the head of the Cdc42- and MAPK-dependent filamentous growth pathway in yeast. Genes Dev 18:1695-708.

17. Cullen, P. J., and G. F. Sprague, Jr. 2000. Glucose depletion causes haploid invasive growth in yeast. Proc Natl Acad Sci U S A 97:13619-24.

18. Davenport, K. D., K. E. Williams, B. D. Ullmann, and M. C. Gustin. 1999. Activation of the Saccharomyces cerevisiae filamentation/invasion pathway by osmotic stress in high-osmolarity glycogen pathway mutants. Genetics 153:1091- 103.

19. Dohlman, H. G., and J. W. Thorner. 2001. Regulation of G protein-initiated signal transduction in yeast: paradigms and principles. Annu Rev Biochem 70:703-54.

20. Dolan, J. W., C. Kirkman, and S. Fields. 1989. The yeast STE12 protein binds to the DNA sequence mediating pheromone induction. Proc Natl Acad Sci U S A 86:5703-7.

21. Dunbrack, R. L., Jr. 2006. Sequence comparison and protein structure prediction. Curr Opin Struct Biol 16:374-84.

22. Endoh, H., A. J. Walhout, and M. Vidal. 2000. A green fluorescent protein- based reverse two-hybrid system: application to the characterization of large numbers of potential protein-protein interactions. Methods Enzymol 328:74-88. 23. Errede, B., and G. Ammerer. 1989. STE12, a protein involved in cell-type-

specific transcription and signal transduction in yeast, is part of protein-DNA complexes. Genes Dev 3:1349-61.

24. Esch, R. K., and B. Errede. 2002. Pheromone induction promotes Ste11

degradation through a MAPK feedback and ubiquitin-dependent mechanism. Proc Natl Acad Sci U S A 99:9160-5.

25. Farley, F. W., B. Satterberg, E. J. Goldsmith, and E. A. Elion. 1999. Relative dependence of different outputs of the Saccharomyces cerevisiae pheromone response pathway on the MAP kinase Fus3p. Genetics 151:1425-44.

26. Farley, F. W., B. Satterberg, E. J. Goldsmith, and E. A. Elion. 1999. Relative dependence of different outputs of the Saccharomyces cerevisiae pheromone response pathway on the MAP kinase Fus3p. Genetics 151:1425-44.

27. Feng, Y., L. Y. Song, E. Kincaid, S. K. Mahanty, and E. A. Elion. 1998. Functional binding between Gbeta and the LIM domain of Ste5 is required to activate the MEKK Ste11. Curr Biol 8:267-78.

28. Fischer, D. 2006. Servers for protein structure prediction. Curr Opin Struct Biol 16:178-82.

29. Flatauer, L. J., S. F. Zadeh, and L. Bardwell. 2005. Mitogen-activated protein kinases with distinct requirements for Ste5 scaffolding influence signaling specificity in Saccharomyces cerevisiae. Mol Cell Biol 25:1793-803.

30. Fujiwara, T., K. Tanaka, A. Mino, M. Kikyo, K. Takahashi, K. Shimizu, and Y. Takai. 1998. Rho1p-Bni1p-Spa2p interactions: implication in localization of Bni1p at the bud site and regulation of the actin cytoskeleton in Saccharomyces cerevisiae. Mol Biol Cell 9:1221-33.

31. Gagiano, M., F. F. Bauer, and I. S. Pretorius. 2002. The sensing of nutritional status and the relationship to filamentous growth in Saccharomyces cerevisiae. FEMS Yeast Res 2:433-70.

32. Ge, Q. Y. 1997. Feedback regulation of Ste7p, the MEK in the pheromone response pathway of Saccharomyces cerevisiae. University of North Carolina, Chapel Hill.

Johnson, V. Mesguiche, D. R. Newell, M. E. Noble, J. A. Tucker, and H. J. Whitfield. 2002. Probing the ATP ribose-binding domain of cyclin-dependent kinases 1 and 2 with O(6)-substituted guanine derivatives. J Med Chem 45:3381- 93.

34. Ginalski, K. 2006. Comparative modeling for protein structure prediction. Curr Opin Struct Biol 16:172-7.

35. Huse, M., Y. G. Chen, J. Massague, and J. Kuriyan. 1999. Crystal structure of the cytoplasmic domain of the type I TGF beta receptor in complex with FKBP12. Cell 96:425-36.

36. Inouye, C., N. Dhillon, T. Durfee, P. C. Zambryski, and J. Thorner. 1997. Mutational analysis of STE5 in the yeast Saccharomyces cerevisiae: application of a differential interaction trap assay for examining protein-protein interactions. Genetics 147:479-92.

37. Inouye, C., N. Dhillon, and J. Thorner. 1997. Ste5 RING-H2 domain: role in Ste4-promoted oligomerization for yeast pheromone signaling. Science 278:103- 6.

38. Laloux, I., E. Jacobs, and E. Dubois. 1994. Involvement of SRE element of Ty1 transposon in TEC1-dependent transcriptional activation. Nucleic Acids Res 22:999-1005.

39. Lei, M., W. Lu, W. Meng, M. C. Parrini, M. J. Eck, B. J. Mayer, and S. C. Harrison. 2000. Structure of PAK1 in an autoinhibited conformation reveals a multistage activation switch. Cell 102:387-97.

40. Ling, M. M., and B. H. Robinson. 1997. Approaches to DNA mutagenesis: an overview. Anal Biochem 254:157-78.

41. Lorenz, M. C., N. S. Cutler, and J. Heitman. 2000. Characterization of alcohol- induced filamentous growth in Saccharomyces cerevisiae. Mol Biol Cell 11:183- 99.

42. Luthy, R., J. U. Bowie, and D. Eisenberg. 1992. Assessment of protein models with three-dimensional profiles. Nature 356:83-5.

43. Ma, J., and M. Ptashne. 1987. A new class of yeast transcriptional activators. Cell 51:113-9.

44. Madhani, H. D., and G. R. Fink. 1997. Combinatorial control required for the specificity of yeast MAPK signaling. Science 275:1314-7.

45. Madhani, H. D., T. Galitski, E. S. Lander, and G. R. Fink. 1999. Effectors of a developmental mitogen-activated protein kinase cascade revealed by expression signatures of signaling mutants. Proc Natl Acad Sci U S A 96:12530-5.

46. Madhani, H. D., C. A. Styles, and G. R. Fink. 1997. MAP kinases with distinct inhibitory functions impart signaling specificity during yeast differentiation. Cell 91:673-84.

47. Maleri, S., Q. Ge, E. A. Hackett, Y. Wang, H. G. Dohlman, and B. Errede. 2004. Persistent activation by constitutive Ste7 promotes Kss1-mediated invasive growth but fails to support Fus3-dependent mating in yeast. Mol Cell Biol

24:9221-38.

48. Matheos, D., M. Metodiev, E. Muller, D. Stone, and M. D. Rose. 2004.

Pheromone-induced polarization is dependent on the Fus3p MAPK acting through the formin Bni1p. J Cell Biol 165:99-109.

49. Mattison, C. P., S. S. Spencer, K. A. Kresge, J. Lee, and I. M. Ota. 1999. Differential regulation of the cell wall integrity mitogen-activated protein kinase pathway in budding yeast by the protein tyrosine phosphatases Ptp2 and Ptp3. Mol Cell Biol 19:7651-60.

50. Mimnaugh, E. G., P. Bonvini, and L. Neckers. 1999. The measurement of ubiquitin and ubiquitinated proteins. Electrophoresis 20:418-28.

51. Mocz, G., and I. R. Gibbons. 2001. Model for the motor component of dynein heavy chain based on homology to the AAA family of oligomeric ATPases. Structure 9:93-103.

52. Munshi, S., D. L. Hall, M. Kornienko, P. L. Darke, and L. C. Kuo. 2003. Structure of apo, unactivated insulin-like growth factor-1 receptor kinase at 1.5 A resolution. Acta Crystallogr D Biol Crystallogr 59:1725-30.

53. Neiman, A. M., and I. Herskowitz. 1994. Reconstitution of a yeast protein kinase cascade in vitro: activation of the yeast MEK homologue STE7 by STE11. Proc Natl Acad Sci U S A 91:3398-402.

54. O'Rourke, S. M., and I. Herskowitz. 1998. The Hog1 MAPK prevents cross talk between the HOG and pheromone response MAPK pathways in

Saccharomyces cerevisiae. Genes Dev 12:2874-86.

55. Palecek, S. P., A. S. Parikh, and S. J. Kron. 2002. Sensing, signalling and integrating physical processes during Saccharomyces cerevisiae invasive and filamentous growth. Microbiology 148:893-907.

56. Printen, J. A., and G. F. Sprague, Jr. 1994. Protein-protein interactions in the yeast pheromone response pathway: Ste5p interacts with all members of the MAP kinase cascade. Genetics 138:609-19.

57. Rhodes, N., M. Company, and B. Errede. 1990. A yeast-Escherichia coli shuttle vector containing the M13 origin of replication. Plasmid 23:159-62.

58. Roberts, C. J., B. Nelson, M. J. Marton, R. Stoughton, M. R. Meyer, H. A. Bennett, Y. D. He, H. Dai, W. L. Walker, T. R. Hughes, M. Tyers, C. Boone, and S. H. Friend. 2000. Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles. Science 287:873-80. 59. Roberts, C. J., B. Nelson, M. J. Marton, R. Stoughton, M. R. Meyer, H. A.

Bennett, Y. D. He, H. Dai, W. L. Walker, T. R. Hughes, M. Tyers, C. Boone, and S. H. Friend. 2000. Signaling and ciruitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles. Science 287:873-880. 60. Roberts, R. L., and G. R. Fink. 1994. Elements of a single MAP kinase cascade

in Saccharomyces cerevisiae mediate two developmental programs in the same cell type: mating and invasive growth. Genes Dev 8:2974-85.

61. Roemer, T., L. Vallier, Y. J. Sheu, and M. Snyder. 1998. The Spa2-related protein, Sph1p, is important for polarized growth in yeast. J Cell Sci 111 ( Pt 4):479-94.

62. Sabbagh, W., Jr., L. J. Flatauer, A. J. Bardwell, and L. Bardwell. 2001. Specificity of MAP kinase signaling in yeast differentiation involves transient versus sustained MAPK activation. Mol Cell 8:683-91.

63. Serohijos, A. W., Y. Chen, F. Ding, T. C. Elston, and N. V. Dokholyan. 2006. A structural model reveals energy transduction in dynein. Proc Natl Acad Sci U S A.

64. Sheu, Y. J., Y. Barral, and M. Snyder. 2000. Polarized growth controls cell shape and bipolar bud site selection in Saccharomyces cerevisiae. Mol Cell Biol 20:5235-47.

65. Sheu, Y. J., B. Santos, N. Fortin, C. Costigan, and M. Snyder. 1998. Spa2p interacts with cell polarity proteins and signaling components involved in yeast cell morphogenesis. Mol Cell Biol 18:4053-69.

66. Tedford, K., S. Kim, D. Sa, K. Stevens, and M. Tyers. 1997. Regulation of the mating pheromone and invasive growth responses in yeast by two MAP kinase substrates. Curr Biol 7:228-38.

67. van Drogen, F., and M. Peter. 2002. Spa2p functions as a scaffold-like protein to recruit the Mpk1p MAP kinase module to sites of polarized growth. Curr Biol 12:1698-703.

68. Vidal, M., and P. Legrain. 1999. Yeast forward and reverse 'n'-hybrid systems. Nucleic Acids Res 27:919-29.

69. Whiteway, M. S., C. Wu, T. Leeuw, K. Clark, A. Fourest-Lieuvin, D. Y. Thomas, and E. Leberer. 1995. Association of the yeast pheromone response G protein beta gamma subunits with the MAP kinase scaffold Ste5p. Science 269:1572-5.

70. Yang, J., P. Cron, V. M. Good, V. Thompson, B. A. Hemmings, and D. Barford. 2002. Crystal structure of an activated Akt/protein kinase B ternary complex with GSK3-peptide and AMP-PNP. Nat Struct Biol 9:940-4.

71. Zeitlinger, J., I. Simon, C. T. Harbison, N. M. Hannett, T. L. Volkert, G. R. Fink, and R. A. Young. 2003. Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling. Cell 113:395-404.

72. Zheng, C. F., and K. L. Guan. 1994. Activation of MEK family kinases requires phosphorylation of two conserved Ser/Thr residues. Embo J 13:1123-31.

CHAPTER 4

GENERAL DISCUSSION

There are five MAPK signaling modules in yeast. These MAPK modules are involved in signaling processes for mating, filamentous growth, high osmolarity adaptation, cell wall synthesis, and sporulation. It is becoming clear that signaling via MAPK modules in yeast is not a linear event but rather due to a network of proteins. It was originally proposed by Madhani et al. that there were distinct functions for the MAPKs Kss1 and Fus3 in mating and filamentous growth (11). Here they propose that Fus3 is the MAPK used in the mating pathway while Kss1 is the MAPK used for filamentous growth (11). This interpretation of their data was ultimately erroneous. Recent data from our lab and others has demonstrated that a linear signaling pathway is not a likely scenario. It has been demonstrated by various labs that Kss1 and Fus3 are dually phosphorylated by Ste7 to an equal extent in response to mating pheromone (1, 3, 12, 15). Additionally the transcriptional output in response to mating pheromone is identical when activated by Kss1 or Fus3 (14). One notable difference between the mechanism by which Ste7 phosphorylates Kss1 and Fus3 is that Fus3 phosphorylation requires the scaffold protein Ste5 while phosphorylation of Kss1 does not (1, 3, 9, 12).

Recent evidence has also demonstrated that MAPKs can play both positive and negative roles in various signaling pathways. One such example is the MAPK Kss1.

promotes filamentous growth (7, 11). In a similar fashion we demonstrated that unphosphorylated Fus3 was inhibitory for signaling in the mating pathway even when Kss1 was constitutively phosphorylated (12). This inhibition was removed only when Fus3 was deleted along with the scaffold protein Ste5 (12). These results suggest a synergistic effect both proteins have on inhibiting the transcriptional output of the mating pathway when Fus3 remains unphosphorylated.

Further evidence that MAPKs in yeast work in concert with each other is the inhibitory functions observed across pathways. One such example is the MAPK Fus3 inhibiting filamentous growth when activated by mating pheromone. It was first observed that deleting Fus3 had a stimulatory effect on invasive growth (6, 11). This effect was due to the fact that activated Fus3 leads to a phosphorylation and ubiquitin dependent degradation of the filamentous growth transcription factor Tec1 (2, 5). It was also demonstrated that deleting the MAPK Hog1 also had a stimulatory effect on

filamentous growth (10, 13). In addition to stimulating filamentous growth, deleting Hog1 also allowed for cross-talk between the high osmolarity signaling pathway and the mating pathway. The results of this cross-talk were transcriptional output and

morphogenic changes typically observed in haploid yeast in response to mating pheromone now occurred in response to high osmolarity (13).

The MAPK involved in cell wall synthesis, Mpk1, is activated in response to stimuli that alter the shape of the plasma membrane (reviewed in (8)). The polarized growth morphogenesis observed when haploid yeast encounter mating pheromone serves as a stimulus to activate Mpk1 (4, 8). This activation of Mpk1 in response to mating pheromone is dependent on the transcriptional output and translation of genes regulated

by Ste12 (4). Work done by Yashar et al. demonstrated that the MAPKK Ste7, which normally functions in the mating and filamentous growth MAPK signaling pathways, could compensate for deletions of the redundant MAPKKs Mkk1 and Mkk2, which activate Mpk1, when overproduced or in strains deleted for Ste5 and rescue yeast from lysis when heat shocked (16). These results suggest that the scaffold protein Ste5 promotes signaling specificity by tethering Ste7 and sequestering it from activating MAPKs other than Kss1 and Fus3 (16). We found further evidence to support this Ste7 cross-talk into the cell wall synthesis pathway with a substitution mutant derivative (Ste7-

L194S) that has reduced binding to Ste5. When this mutant derivative of Ste7 is expressed

in yeast cells we observe a 2-fold higher phosphorylation of Mpk1 in vegetatively growing cells when compared to cells expressing wild-type Ste7 (Chapter 3 of this thesis). In conjunction with this increased phosphorylation of Mpk1 yeast expressing

Ste7-L194S have higher levels of transcription of the filamentous growth reporter gene

Ty1-lacZ when compared to cells expressing wild-type Ste7.

The work done by others and in this thesis supports the hypothesis that signaling in yeast via MAPK modules is not a linear event but rather involves a network of MAPKs. One can speculate on how such a network could function in a differentiation

Related documents