Development of a baited video technique and spatial models to explain patterns of fish biodiversity in inter-reef waters
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(2) 9.. BIBLIOGRAPHY. Able KW, Twichell DC, Grimes CB & Jones RS (1987) Sidescan sonar as a tool for detection of demersal fish habitats. Fishery Bulletin 85: 725-737. Adams PB, Butler JL, Baxter CH, Laidig TE, Dahlin KA & Wakefield WW (1995) Population estimates of Pacific coast groundfishes from video transects and swept-area trawls. Fishery Bulletin 93: 446-455. Akyol O, Ünal V, Ceyhan T & Bilecenoglu M (2005) First confirmed record of Lagocephalus sceleratus (Gmelin, 1789) in the Mediterranean Sea. Journal of Fish Biology 66: 11831186. Alongi DM (1990) The ecology of tropical soft-bottom benthic ecosystems. Oceanography and Marine Biology 28: 381-496. Alongi DM (1998) Coastal ecosystem processes, Vol. CRC Press, Boca Raton. Anderson MJ (2008) Animal-sediment relationships re-visited: Characterising species' distributions along an environmental gradient using canonical analysis and quantile regression splines. Journal of Experimental Marine Biology and Ecology 366: 16-27. Anderson TJ, Syms C, Roberts DA & Howard DF (2009) Multi-scale fish-habitat associations and the use of habitat surrogates to predict the organisation and abundance of deep-water fish assemblages. Journal of Experimental Marine Biology and Ecology 379: 34-42. Anderson TJ, Yoklavich MM & Eittreim SL (2005) Linking fine-scale groundfish distributions with large-scale seafloor maps: Issues and challenges of combining biological and geological data. Benthic Habitats and the Effects of Fishing 41: 667-678. Armstrong JD, Bagley PM & Priede IG (1992) Photographic and acoustic tracking observations of the behaviour of the grenadier Coryphaenoides (Nematonurus) armatus, the eel Synaphobranchus bathybius, and other abyssal demersal fish in the North Atlantic Ocean. Marine Biology 112: 535-544. Auster PJ (2007) Linking deep-water corals and fish populations. In: George RY & Cairns SD (eds.) Conservation and Adaptive Management of Seamount and Deep-Sea Coral Ecosystems.. Rosenstiel School of Marine and Atmospheric Science, University of. Miami, p. 93-99. Austin M (2007) Species distribution models and ecological theory: A critical assessment and some possible new approaches. Ecological Modelling 200: 1-19.. 246.
(3) Bailey DM & Priede IG (2002) Predicting fish behaviour in response to abyssal food falls. Marine Biology 141: 831-840. Bax NJ & Williams A (2001) Seabed habitat on the south-eastern Australian continental shelf: Context, vulnerability and monitoring. Marine and Freshwater Research 52: 491-512. Beaman RJ & Harris PT (2007) Geophysical variables as predictors of megabenthos assemblages from the northern Great Barrier Reef, Australia. In: Todd BJ & Greene HG (eds.) Mapping the seafloor for habitat characterization, Vol 47. Geological Association of Canada, St Johns, Newfoundland and Labrador, Canada, p. 247-264. Beger M & Possingham HP (2008) Environmental factors that influence the distribution of coral reef fishes: Modeling occurrence data for broad-scale conservation and management. Marine Ecology Progress Series 361: 1-13. Bellwood DR (1998) What are reef fishes? Comment on the report by D.R. Robertson: Do coral-reef fish faunas have a distinctive taxonomic structure? (Coral Reefs 17: 179-186). Coral Reefs 17: 187-189. Bellwood DR & Wainwright PC (2002) The history and biogeography of fishes on coral reefs. In: Sale PF (ed.) Coral reef fishes: Dynamics and diversity in a complex ecosystem. Academic Press, London, p. 5-32. Bianchi G (1992) Study of the demersal assemblages of the continental shelf and upper slope off Congo and Gabon, based on the trawl surveys of the RV Nansen-Fridtjof. Marine Ecology Progress Series 85: 9-23. Bianchi G, Gislason H, Graham K, Hill L, Jin X, Koranteng K, Manickchand-Heileman S, Paya I, Sainsbury K, Sanchez F & Zwanenburg K (2000) Impact of fishing on size composition and diversity of demersal fish communities. Ices Journal of Marine Science 57: 558-571. Bini LM, Diniz JAF, Rangel T, Bastos RP & Pinto MP (2006) Challenging Wallacean and Linnean shortfalls: Knowledge gradients and conservation planning in a biodiversity hotspot. Diversity and Distributions 12: 475-482. Birtles RA & Arnold PW (1988) Distribution of trophic groups of epifaunal echinoderms and molluscs in the soft sediment areas of the central Great Barrier Reef shelf. In: Choat JH & Barnes D (eds.) Proceedings of the 6th International Coral Reef Symposium. International Coral Reef Symposium Executive Committee, Townsville, p. 325-332. Blaber SJM, Brewer DT & Harris AN (1994) Distribution, biomass and community structure of demersal fishes of the Gulf of Carpentaria, Australia. Australian Journal of Freshwater Research 45: 375-396.. 247.
(4) Blaber SJM, Cyrus DP, Albaret JJ, Ching CV, Day JW, Elliott M, Fonseca MS, Hoss DE, Orensanz J, Potter IC & Silvert W (2000) Effects of fishing on the structure and functioning of estuarine and nearshore ecosystems. Ices Journal of Marine Science 57: 590-602. Boswell KM, Wilson MP & Cowan JH (2008) A semiautomated approach to estimating fish size, abundance, and behavior from dual-frequency identification sonar (DIDSON) data. North American Journal of Fisheries Management 28: 799-807. Botsford LW, Castilla JC & Peterson CH (1997) The management of fisheries and marine ecosystems. Science 277: 509-515. Brayard A, Escarguel G & Bucher H (2005) Latitudinal gradient of taxonomic richness: Combined outcome of temperature and geographic mid-domains effects? Journal of Zoological Systematics and Evolutionary Research 43: 178-188. Breiman L (2001) Random Forests. Machine Learning 45: 5-32. Brinkman R, Wolanski E, Deleersnijder E, McAllister F & Skirving W (2002) Oceanic inflow from the Coral Sea into the Great Barrier Reef. Estuarine Coastal and Shelf Science 54: 655-668. Brodie J (2003) The Great Barrier Reef:. 25 Years of Management as a Large Marine. Ecosystem. In: Hempel G & Sherman K (eds.) Large Marine Ecosystems of the World: Trends in exploitation, protection and research, Vol 12. Elsevier, Amsterdam, p. 313-316. Brodie J, De'ath G, Devlin M, Furnas M & Wright M (2007) Spatial and temporal patterns of near-surface chlorophyll a in the Great Barrier Reef lagoon. Marine and Freshwater Research 58: 342-353. Brodie J & Fabricius K (2009) Terrestrial runoff to the Great Barrier Reef and the implications for its long term ecological status. In: Hutchings P, Kingsford M & Hoegh-Guldberg, O (eds.) Great Barrier Reef: Biology, Environment and Management, CSIRO Publishing, Australia, p. 108-113. Brown JH (1984) On the relationship between abundance and distribution of species. American Naturalist 124: 255-279. Burridge CY, Pitcher CR, Hill BJ, Wassenberg TJ & Poiner IR (2006) A comparison of demersal communities in an area closed to trawling with those in adjacent areas open to trawling: A study in the Great Barrier Reef Marine Park, Australia. Fisheries Research 79: 64-74. Cappo M & Brown I (1996) Evaluation of sampling methods for reef fish populations of commercial and recreational interest. CRC Reef Research Centre, Townsville, Australia.. 248.
(5) Cappo M, Speare P, Wassenberg T, Harvey ES, Rees M, Heyward A & Pitcher CR (2001). The use of Baited Remote Underwater Video Stations to survey demersal fish stocks – how deep and meaningful? Appendix 3, p 63-71. In: Harvey ES & Cappo M. (eds) Direct sensing of the size frequency and abundance of target and non-target fauna in Australian Fisheries - a national workshop. 4-7 September 2000, Rottnest Island, Western Australia. Fisheries Research and Development Corporation. ISBN 1 74052 057 2, 187 pp. Cappo M, De'ath G & Speare P (2007a) Inter-reef vertebrate communities of the Great Barrier Reef Marine Park determined by baited remote underwater video stations. Marine Ecology Progress Series 350: 209-221. Cappo M, Harvey E, Malcom H & Speare P (2003) Potential of video techniques to monitor diversity, abundance and size of fish in studies of Marine Protected Areas. In: Beumer JP, Grant A, & Smith DC (eds.) World Congress on Aquatic Protected Areas Proceedings, Cairns, Australia, August 2002. Australian Society for Fish Biology, p 455-464. Cappo M, Harvey E & Shortis M (2007b) Counting and measuring fish with baited video techniques – An overview. Australian Society for Fish Biology 2006 Workshop Proceedings, p. 101-114. Cappo M & Kelley R (2001) Connectivity in the Great Barrier Reef World Heritage Area – An overview of pathways and processes. Chapter 11. In: Wolanski E (ed.) Oceanographic Processes of Coral Reefs: Physical and Biological Links in the Great Barrier Reef, CRC Press, p. 161-187. Cappo M, Meekan M, Perry M, McCauley R & Harvey ES (2004a) Traditional Fishing Puts the Bite on Sharks. Australasian Science November/December: 29-32. Cappo M & Speare P (2004) The ecological usage of epibenthic habitat by key commercial finfish species. In: Pitcher CR, et al. (eds.) Dynamics of large sessile seabed fauna, important for structural fisheries habitat and biodiversity of marine ecosystems and use of these habitats by key finfish species. Final Report, Fisheries Research & Development Corporation (FRDC) Project No 97/205. CSIRO Division of Marine Research, Cleveland, Queensland, Australia, p. 300. Cappo M, Speare P & De'ath G (2004b) Comparison of baited remote underwater video stations (BRUVS) and prawn (shrimp) trawls for assessments of fish biodiversity in inter-reefal areas of the Great Barrier Reef Marine Park. Journal of Experimental Marine Biology and Ecology 302: 123-152.. 249.
(6) Carruthers TJB, Dennison WC, Longstaff BJ, Waycott M, Abal EG, McKenzie LJ & Long WJL (2002) Seagrass habitats of northeast Australia: Models of key processes and controls. Bulletin of Marine Science 71: 1153-1169. Chambers JM, Cleveland WS, Kleiner B, & Tukey PA (1983) Graphical Methods for Data Analysis. Wadsworth & Brooks/Cole p. 62. Coleman FC, Koenig CC & Collins LA (1996) Reproductive styles of shallow-water groupers (Pisces: Serranidae) in the eastern Gulf of Mexico and the consequences of fishing spawning aggregations. Environmental Biology of Fishes 47: 129-141. Coleman FC, Koenig CC, Huntsman GR, Musick JA, Eklund AM, McGovern JC, Chapman RW, Sedberry GR & Grimes CB (2000) Long-lived reef fishes: The grouper-snapper complex. Fisheries 25: 14-21. Coles R, McKenzie L, De’ath G, Roelofs A & Lee Long W (2009) Spatial distribution of deepwater seagrass in the inter-reef lagoon of the Great Barrier Reef World Heritage Area. Marine Ecology Progress Series 392: 57-68. Colwell RK, Gotelli NJ, Rahbek C, Entsminger GL, Farrell C and Grave GR (2009) Peaks, plateaus, canyons, and craters: The complex geometry of simple mid-domain effect models. Evolutionary Ecology Research 11: 355-370. Colwell RK & Hurtt GC (1994) Non-biological gradients in species richness and a spurious Rapoport effect. American Naturalist 144: 570-595. Condie SA & Dunn JR (2006) Seasonal characteristics of the surface mixed layer in the Australasian region: Implications for primary production regimes and biogeography. Marine and Freshwater Research 57: 569-590. Cooke SJ & Cowx IG (2004) The role of recreational fishing in global fish crises. Bioscience 54: 857-859. Cooper TF, Uthicke S, Humphrey C & Fabricius KE (2007) Gradients in water column nutrients, sediment parameters, irradiance and coral reef development in the Whitsunday Region, central Great Barrier Reef. Estuarine Coastal and Shelf Science 74: 458-470. Craik W (1989) Management of recreational fishing in the Great Barrier Reef Marine Park. Technical Memorandum 23, Great Barrier Reef Marine Park Authority, Townsville, Australia. Da Silva Cassemiro F, Barreto BDS, Rangel T & Diniz-Filho JAF (2007) Non-stationarity, diversity gradients and the metabolic theory of ecology. Global Ecology and Biogeography 16: 820-822.. 250.
(7) De'ath G (1999) Extended dissimilarity: A method of robust estimation of ecological distances from high beta diversity data. Plant Ecology 144: 191-199. De'ath G (2002) Multivariate regression trees: A new technique for modeling speciesenvironment relationships. Ecology 83: 1105-1117. De'ath G (2007) Boosted trees for ecological modeling and prediction. Ecology 88: 243-251. De'ath G & Fabricius KE (2000) Classification and regression trees: A powerful yet simple technique for ecological data analysis. Ecology 81: 3178-3192. DeMartini EE & Friedlander AM (2004) Predation, endemism, and related processes structuring shallow-water reef fish assemblages of the NWHI. Proceedings of the Northwestern Hawaiian Islands Third Scientific Symposium, Hawai’I Convention Center, Honolulu, Hawai’i, 2-4 November. DeMartini EE, Friedlander AM, Sandin SA & Sala E (2008) Differences in fish-assemblage structure between fished and unfished atolls in the northern Line Islands, central Pacific. Marine Ecology Progress Series 365: 199-215. Denny CM & Babcock RC (2004) Do partial marine reserves protect reef fish assemblages? Biological Conservation 116: 119-129. Denny CM, Willis TJ & Babcock RC (2004) Rapid recolonisation of snapper Pagrus auratus: Sparidae within an offshore island marine reserve after implementation of no-take status. Marine Ecology Progress Series 272: 183-190. Drew EA (2001) Ocean nutrients to sediment banks via tidal jets and Halimeda meadows. In: Wolanski E (ed.) Oceanographic processes of coral reefs: Physical and biological links in the Great Barrier Reef. CRC Press, Boca Raton, Florida, p. 255-267. Dufrêne M & Legendre P (1997) Species assemblages and indicator species: The need for a flexible asymmetrical approach. Ecological Monographs 67: 345-366. Dulvy NK, Rogers SI, Jennings S, Stelzenmuller V, Dye SR & Skjoldal HR (2008) Climate change and deepening of the North Sea fish assemblage: A biotic indicator of warming seas. Journal of Applied Ecology 45: 1029-1039. Eagle JV, Jones GP & McCormick MI (2001) A multi-scale study of the relationships between habitat use and the distribution and abundance patterns of three coral reef angelfishes (Pomacanthidae). Marine Ecology Progress Series 214: 253-265. Eayrs S, Buxton C & McDonald B (1997) A guide to bycatch reduction in Australian prawn trawl fisheries. Australian Maritime College, Launceston, Tasmania, 54p.. 251.
(8) Edgar GJ & Shaw C (1995) The production and trophic ecology of shallow-water fish assemblages in southern Australia: II. Diets of fishes and trophic relationships between fishes and benthos at Western Port, Victoria. Journal of Experimental Marine Biology and Ecology 194: 83-106. Ehrich S, Stelzenmuller V & Adlerstein S (2009) Linking spatial pattern of bottom fish assemblages with water masses in the North Sea. Fisheries Oceanography 18: 36-50. Elith J, Leathwick JR & Hastie T (2008) A working guide to boosted regression trees. Journal of Animal Ecology 77: 802-813. Ellis DM & DeMartini EE (1995) Evaluation of a video camera technique for indexing the abundances of juvenile pink snapper, Pristipomoides filamentosus, and other Hawaiian insular shelf fishes. Fishery Bulletin 93: 67-77. Ellis N, Pantus F, Welna A & Butler A (2008) Evaluating ecosystem-based management options: Effects of trawling in Torres Strait, Australia. Continental Shelf Research 28: 2324-2338. Fabricius K & De'ath G (2001a) Biodiversity on the Great Barrier Reef: Large-scale patterns and turbidity-related local loss of soft coral taxa. In: Wolanski E (ed.) Oceanographic processes of coral reefs: Physical and biological links in the Great Barrier Reef. CRC Press, Boca Raton, Florida, p. 127-144. Fabricius K & De'ath G (2001b) Environmental factors associated with the spatial distribution of crustose coralline algae on the Great Barrier Reef. Coral Reefs 19: 303-309. Fabricius K, De'ath G, McCook L, Turak E & Williams DM (2005) Changes in algal, coral and fish assemblages along water quality gradients on the inshore Great Barrier Reef. Marine Pollution Bulletin 51: 384-398. Fabricius KE & De'ath G (2008) Photosynthetic symbionts and energy supply determine octocoral biodiversity in coral reefs. Ecology 89: 3163-3173. Fager EW & Longhurst AR (1968) Recurrent group analysis of species assemblages of demersal fish in the Gulf of Guinea. Journal of the Fisheries Research Board of Canada 25: 14051421. Farnsworth KD, Thygesen UH, Ditlevsen S & King NJ (2007) How to estimate scavenger fish abundance using baited camera data. Marine Ecology Progress Series 350: 223-234. Fernandes L, Day J, Lewis A, Slegers S, Kerrigan B, Breen D, Cameron D, Jago B, Hall J & Lowe D (2005) Establishing representative no-take areas in the Great Barrier Reef: Large-scale implementation of theory on marine protected areas. Conservation Biology 19: 1733-1744.. 252.
(9) Fraser RH & Currie DJ (1996) The species richness-energy hypothesis in a system where historical factors are thought to prevail: Coral reefs. American Naturalist 148: 138-159. Friedlander AM, Brown E & Monaco ME (2007) Defining reef fish habitat utilization patterns in Hawaii: Comparisons between marine protected areas and areas open to fishing. Marine Ecology Progress Series 351: 221-233. Friedman JH (2001) Greedy function approximation: A gradient boosting machine. Annals of Statistics 29: 1189-1232. Friedman JH (2002) Stochastic gradient boosting. Computational Statistics and Data Analysis 38: 367-378. Froese R & Pauly D (eds.) (2009) FishBase. World Wide Web electronic publication/database. www.fishbase.org, version 10/2009. Furnas M, Mitchell A, Skuza M & Brodie J (2005) In the other 90%: Phytoplankton responses to enhanced nutrient availability in the Great Barrier Reef Lagoon. Marine Pollution Bulletin 51: 253-265. Furnas MJ & Mitchell AW (1987) Phytoplankton dynamics in the central Great Barrier Reef. II. Primary production. Continental Shelf Research 7: 1049-1062. Furnas MJ & Mitchell AW (1996) Nutrient inputs into the central Great Barrier Reef (Australia) from subsurface intrusions of Coral Sea waters: A two-dimensional displacement model. Continental Shelf Research 16: 1127-1148. Garces LR, Silvestre GT, Stobutzki I, Gayanilo JFC, Valdez F, Saupi M, Boonvanich T, Roongratri M, Thouc P, Purwanto, Haroon I, Kurup KN, Srinath M, Rodrigo HAB, Santos MD, Torres JFSB, Tan MK & Pauly D (2006a) A regional database management system – the fisheries resource information system and tools (FiRST): Its design, utility and future directions. Fisheries Research 78: 119-129. Garces LR, Stobutzki I, Alias M, Campos W, Koongchai N, Lachica-Alino L, Mustafa G, Nurhakim S, Srinath M & Silvestre G (2006b) Spatial structure of demersal fish assemblages in South and Southeast Asia and implications for fisheries management. Fisheries Research 78: 143-157. García CB, Duarte LO & von Schiller D (1998) Demersal fish assemblages of the Gulf of Salamanca, Colombia (southern Caribbean Sea). Marine Ecology Progress Series 174: 13-25.. 253.
(10) García CB, Duarte LO, Altamar J & Manjarrés LM (2007) Demersal fish density in the upwelling ecosystem off Colombia, Caribbean Sea: Historic outlook. Fisheries Research 85: 68-73. Gledhill CT, Ingram GW, Rademacher KR, Felts P & Trigg B (2005) NOAA Fisheries Reef Fish Video Surveys: Yearly indices of abundance for gag (Mycteroperca microlepis). Report prepared for SouthEast Data Assessment and Review (SEDAR) 10-DW-12. Gotelli NJ & Colwell RK (2001) Quantifying biodiversity: Procedures and pitfalls in the measurement and comparison of species richness. Ecology Letters 4: 379-391. Govoni JJ & Grimes CB (1992) The surface accumulation of larval fishes by hydrodynamic convergence within the Mississippi river plume front. Continental Shelf Research 12: 1265-1276. Gray JS (1997) Gradients in marine biodiversity. In: Ormond RFG, Gage JD & Angel MV (eds.) Marine biodiversity: Patterns and processes. Cambridge University Press, Cambridge, UK, p. 18-34. Gray JS (2001) Marine diversity: The paradigms in patterns of species richness examined. Scientia Marina 65: 41-56. Gribble NA, Wassenberg TJ & Burridge C (2007) Factors affecting the distribution of commercially exploited penaeid prawns (shrimp) (Decapod:Penaeidae) across the northern Great Barrier Reef, Australia. Fisheries Research 85: 174-185. Grimes CB & Finucane JH (1991) Spatial distribution and abundance of larval and juvenile fish, chlorophyll and macrozooplankton around the Mississippi river discharge plume, and the role of the plume in fish recruitment. Marine Ecology Progress Series 75: 109-119. Grol MGG, Dorenbosch M, Kokkelmans EMG & Nagelkerken I (2008) Mangroves and seagrass beds do not enhance growth of early juveniles of a coral reef fish. Marine Ecology Progress Series 366: 137-146. Gullstrom M, Bodin M, Nilsson PG & Ohman MC (2008) Seagrass structural complexity and landscape configuration as determinants of tropical fish assemblage composition. Marine Ecology Progress Series 363: 241-255. Gust N, Choat JH & McCormick MI (2001) Spatial variability in reef fish distribution, abundance, size and biomass: A multi-scale analysis. Marine Ecology Progress Series 214: 237-251. Hall SJ (2002) The soft-sediment continental shelf benthic ecosystem: Current status, agents for change and future prospects. Environmental Conservation 29: 350-374.. 254.
(11) Hall SJ, Collie JS, Duplisea DE, Jennings S, Bravington M & Link J (2006) A length-based multispecies model for evaluating community responses to fishing. Canadian Journal of Fisheries and Aquatic Sciences 63: 1344-1359. Hall SJ & Greenstreet SP (1998) Taxonomic distinctness and diversity measures: Responses in marine fish communities. Marine Ecology Progress Series 166: 227-229. Hancock GJ, Webster IT & Stieglitz TC (2006) Horizontal mixing of Great Barrier Reef waters: Offshore diffusivity determined from radium isotope distribution. Journal of Geophysical Research 111: C12019. Harris AN & Poiner IR (1991) Changes in species composition of demersal fish fauna of southeast Gulf of Carpentaria, Australia, after 20 years of fishing. Marine Biology 111: 503-519. Harris PT, Heap A, Passlow V, Hughes M, Daniell J, Hemer M & Anderson O (2005) Tidally incised valleys on tropical carbonate shelves: An example from the northern Great Barrier Reef, Australia. Marine Geology 220: 181-204. Hartsuijker L & Nicholson WE (1981) Results of a trap fishing survey of Pedro Bank (Caribbean Sea): The relations between catch rates, catch composition, size of fish and their recruitment. Fisheries Division, Kingston, Jamaica. Harvey E, Shortis M, Stadler M & Cappo M (2002) A comparison of the accuracy and precision of measurements from sigle and stereo-video systems. Journal of the Marine Technology Society 36: 38-49. Harvey ES, Cappo M, Butler JJ, Hall N & Kendrick GA (2007) Bait attraction affects the performance of remote underwater video stations in assessment of demersal fish community structure. Marine Ecology Progress Series 350: 245-254. Hazen EL, Craig JK, Good CP & Crowder LB (2009) Vertical distribution of fish biomass in hypoxic waters on the Gulf of Mexico shelf. Marine Ecology Progress Series 375: 195207. Heagney EC, Lynch TP, Babcock RC & Suthers IM (2007) Pelagic fish assemblages assessed using mid-water baited video: Standardising fish counts using bait plume size. Marine Ecology Progress Series 350: 255-266. Heupel MR, Williams AJ, Welch DJ, Ballagh A, Mapstone BD, Carlos G, Davies C & Simpfendorfer CA (2009) Effects of fishing on tropical reef associated shark populations on the Great Barrier Reef. Fisheries Research 95: 350-361.. 255.
(12) High WL (1980) Bait loss from halibut longline gear observed from a submersible. Marine Fisheries Review 42: 26-29. Hill BJ & Wassenberg TJ (2000) The probable fate of discards from prawn trawlers fishing near coral reefs – A study in the northern Great Barrier Reef, Australia. Fisheries Research 48: 277-286. Holmes KW, Van Niel KP, Radford B, Kendrick GA & Grove SL (2008) Modelling distribution of marine benthos from hydroacoustics and underwater video. Continental Shelf Research 28: 1800-1810. Hutchins JB (1997) Review of the monacanthid fish genus Paramonacanthus, with descriptions of three new species. Records of the Western Australian Museum Supplement 54: 1-57. IMCRA (1998) An ecosystem-based classification for marine and coastal environments, Vol. Integrated Marine and Coastal Regionalisation of Australia (IMCRA), Australian Government, http://www.environment.gov.au/coasts/mbp/imcra/index.html Joanny T & Menard F (2002) Analysis of the spatial and temporal variability of demersal communities on the continental shelf of Cote-D'Ivoire. In: McGlade J, Cury P, Koranteng KA & Hardman-Mountford NJ (eds.) The Gulf of Guinea Large Marine Ecosystem: Environmental forcing and sustainable development of marine resources. Elsevier, Amsterdam, p. 189-206. Jones GP, Caley MJ & Munday PL (2002) Rarity in coral reef fish communities. In: Sale PF (ed.) Coral reef fishes: Dynamics and diversity in a complex ecosystem. Academic Press, London, p. 81-102. Jones GP, Cole RC & Battershill CN (1993) Marine Reserves: Do they work? In: Battershill CN, et al. (eds.) Proceedings of the Second International Temperate Reef Symposium. NIWA Marine, Wellington, Auckland, New Zealand, 7-10 January 1992, p. 29-45. Jones GP, McCormick MI, Srinivasan M & Eagle JV (2004) Coral decline threatens fish biodiversity in marine reserves. Proceedings of the National Academy of Sciences of the United States of America 101: 8251-8253. Jose Juan-Jorda M, Barth JA, Clarke ME & Wakefield WW (2009) Groundfish species associations with distinct oceanographic habitats in the Northern California Current. Fisheries Oceanography 18: 1-19. Kaiser MJ, Rogers SI & Ellis JR (1998) Importance of benthic habitat complexity for demersal fish assemblages. Fish Habitat: Essential Fish Habitat and Rehabilitation 22: 212-223.. 256.
(13) Kelley C, Moffitt R & Smith JR (2006) Description of bottomfish essential fish habitat on four banks in the Northwestern Hawaiian Islands. Atoll Research Bulletin 543: 319-332. King NJ, Bagley PM & Priede IG (2006) Depth zonation and latitudinal distribution of deep-sea scavenging demersal fishes of the Mid-Atlantic Ridge, 42-53°N. Marine Ecology Progress Series 319: 263-274. Kleczkowski M, Babcock RC & Clapin G (2008) Density and size of reef fishes in and around a temperate marine reserve. Marine and Freshwater Research 59: 165-176. Koenig CC, Coleman FC, Collins LA, Sadovy Y & Colin PL (1996) Reproduction in gag (Mycteroperca microlepis) (Pisces: Serranidae) in the eastern Gulf of Mexico and the consequences of fishing spawning aggregations. In: Arreguin-Sánchez F, Munro JL, Balgos MC & Pauly D (eds.) Biology, fisheries and culture of tropical groupers and snappers. Proceedings of an EPOMEX/ICLARM International Workshop on Tropical Snappers and Groupers, University of Campeche, Mexico, 26-29 October 1993, p. 307323. Koenig CC, Coleman FC, Grimes CB, Fitzhugh GR, Scanlon KM, Gledhill CT & Grace M (2000) Protection of fish spawning habitat for the conservation of warm-temperate reeffish fisheries of shelf-edge reefs of Florida. Bulletin of Marine Science 66: 593-616. Koranteng KA (2001) Structure and dynamics of demersal assemblages on the continental shelf and upper slope off Ghana, West Africa. Marine Ecology Progress Series 220: 1-12. Koranteng KA (2002) Fish species assemblages on the continental shelf and upper slope off Ghana. In: McGlade JCP, Koranteng KA & Hardman-Mountford NJ (eds.) The Gulf of Guinea Large Marine Ecosystem: Environmental forcing and sustainable management of marine resources. Elsevier, Amsterdam, p. 173-188. Kracker L, Kendall M & McFall G (2008) Benthic features as a determinant for fish biomass in Gray's Reef National Marine Sanctuary. Marine Geodesy 31: 267-280. Lambrechts J, Hanert E, Deleersnijder E, Bernard PE, Legat V, Remacle JF & Wolanski E (2008) A multi-scale model of the hydrodynamics of the whole Great Barrier Reef. Estuarine Coastal and Shelf Science 79: 143-151. Langlois T, Chabanet P, Pelletier D & Harvey E (2006) Baited underwater video for assessing reef fish populations in marine reserves. SPC Fisheries Newsletter # 118, July/September, p. 53-57. Larcombe P & Carter RM (2004) Cyclone pumping, sediment partitioning and the development of the Great Barrier Reef shelf system: A review. Quaternary Science Reviews 23: 107135. 257.
(14) Le Loeuff P & Zabi GSF (2002) Spatial and temporal variations in benthic fauna and communities of the tropical Atlantic coast of Africa. In: McGlade J, Cury P, Koranteng KA & Hardman-Mountford NJ (eds.) The Gulf of Guinea Large Marine Ecosystem: Environmental forcing and sustainable development of marine resources. Elsevier, Amsterdam, p 147-160. Leathwick JR, Elith J, Francis MP, Hastie T & Taylor P (2006) Variation in demersal fish species richness in the oceans surrounding New Zealand: An analysis using boosted regression trees. Marine Ecology Progress Series 321: 267-281. Legendre P & Anderson MJ (1999) Distance-based redundancy analysis: Testing multispecies responses in multifactorial ecological experiments. Ecological Monographs 69: 1-24. Letourneur Y, Kulbicki M & Labrosse P (1998) Spatial structure of commercial reef fish communities along a terrestrial runoff gradient in the northern lagoon of New Caledonia. Environmental Biology of Fishes 51: 141-159. Liston PW (1990) Spatial variability and covariability of chlorophyll and zooplankton on the Great Barrier Reef. PhD thesis, James Cook University, Australia. Longhurst AR (2007) Ecological geography of the sea, Vol. Elsevier, Amsterdam. Longhurst AR & Pauly D (1987) Ecology of Tropical Oceans, Vol. Academic Press, New York. Love M, Yoklavich M & Schroeder D (2009) Demersal fish assemblages in the Southern California Bight based on visual surveys in deep water. Environmental Biology of Fishes 84: 55-68. Love MS & Yoklavich M (2008) Habitat characteristics of juvenile cowcod, Sebastes levis (Scorpaenidae), in Southern California. Environmental Biology of Fishes 82: 195-202. Lowe-McConnell R (1987) Ecological studies in tropical fish communities, Vol. Cambridge University Press Cambridge. Magurran AE & Henderson PA (2003) Explaining the excess of rare species in natural species abundance distributions. Nature 422: 714-716. Mahon R & Smith RW (1989) Demersal fish assemblages on the Scotian shelf, northwest Atlantic – spatial-distribution and persistence. Canadian Journal of Fisheries and Aquatic Sciences 46: 134-152. Malcolm HA, Gladstone W, Lindfield S, Wraith J & Lynch TP (2007) Spatial and temporal variation in reef fish assemblages of marine parks in New South Wales, Australia – baited video observations. Marine Ecology Progress Series 350: 277-290.. 258.
(15) Mapstone BD, Little LR, Punt AE, Davies CR, Smith ADM, Pantus F, McDonald AD, Williams AJ & Jones A (2008) Management strategy evaluation for line fishing in the Great Barrier Reef: Balancing conservation and multi-sector fishery objectives. Fisheries Research 94: 315-329. Mathews E, Heap A & Woods M (2007) Inter-reefal seabed sediments and geomorphology of the Great Barrier Reef: A spatial analysis, Vol. 2007/09. Geoscience Australia, Canberra, Australia. McArdle BH & Anderson MJ (2001) Fitting multivariate models to community data: A comment on distance-based redundancy analysis. Ecology 82: 290-297. McKinnon AD & Thorrold SR (1993) Zooplankton community structure and copepod eggproduction in coastal waters of the central Great-Barrier-Reef lagoon. Journal of Plankton Research 15: 1387-1411. McManus JW (1997) Tropical marine fisheries and the future of coral reefs: A brief review with emphasis on Southeast Asia. Coral Reefs 16: S121-S127. Meekan MG, Wellington GM & Axe L (1999) El Niño Southern Oscillation events produce checks in the otoliths of coral reef fishes in the Galapagos Archipelago. Bulletin of Marine Science 64: 383-390. Mellin C, Kulbicki M & Ponton D (2007) Seasonal and ontogenetic patterns of habitat use in coral reef fish juveniles. Estuarine Coastal and Shelf Science 75: 481-491. Merritt D (2005) BOTCAM – Design, Testing and Development of a Fully Automated StereoVideo Bottom Camera Bait Station for Ecosystem Monitoring of Bottom Fish Species. Master of Science, University of Hawaii Middleton JH, Coutis P, Griffin DA, Macks A, McTaggart A, Merrifield MA & Nippard GJ (1994) Circulation and water mass characteristics of the southern Great Barrier Reef. Australian Journal of Marine and Freshwater Research 45: 1-18. Mikulas Jr. JJ & Rooker JR (2008) Habitat use, growth, and mortality of post-settlement lane snapper (Lutjanus synagris) on natural banks in the northwestern Gulf of Mexico. Fisheries Research 93: 77-84. Miller RJ (1983) Methods for field experiments with baited traps. Journal of Shellfish Research 3: 97-98. Munday PL, Jones GP, Pratchett MS & Williams AJ (2008) Climate change and the future for coral reef fishes. Fish and Fisheries 9: 261-285.. 259.
(16) Munro JL (1974) The mode of operation of Antillean fish traps and the relationships between ingress, escapement, catch and soak. Journal du Conseil 35: 337-350. Munro JL, Reeson PH & Gaut VC (1971) Dynamic factors affecting the performance of the Antillean Fish Trap. Proceedings of the 23rd Annual Gulf and Caribbean Fisheries Institute 23: 184-194. Murawski SA & Finn JT (1988) Biological bases for mixed-species fisheries: Species codistribution in relation to environmental and biotic variables. Canadian Journal of Fisheries and Aquatic Sciences 45: 1720-1735. Myers RA & Worm B (2003) Rapid worldwide depletion of predatory fish communities. Nature 423: 280-283. Newman SJ (1990) Effects of depth of set, mesh size, bait and lunar phase on the performance of fish traps on the Great Barrier Reef. Honours thesis, Department of Marine Biology, James Cook University, Australia. Newman SJ, Williams DM & Russ GR (1997) Patterns of zonation of assemblages of the Lutjanidae, Lethrinidae and Serranidae (Epinephelinae) within and among mid-shelf and outer-shelf reefs in the central Great Barrier Reef. Marine and Freshwater Research 48: 119-128. Nye JA, Link JS, Hare JA & Overholtz WJ (2009) Changing spatial distribution of fish stocks in relation to climate and population size on the Northeast United States continental shelf. Marine Ecology Progress Series 393: 111-129. Ojeda GY, Gayes PT, Van Dolah RF & Schwab WC (2004) Spatially quantitative seafloor habitat mapping: Example from the northern South Carolina inner continental shelf. Estuarine Coastal and Shelf Science 59: 399-416. Oksanen J, Kindt R, Legendre P, O'Hara R, Simpson GL, Solymos P, Henry M, Stevens H & Wagner H (2009) vegan: Community Ecology Package. R CRAN: http://cran.rproject.org/ Ormond RFG & Roberts CM (1997) The biodiversity of coral reef fishes. In: Ormond RFG, Gage JD & Angel MV (eds) Marine biodiversity: Patterns and processes. Cambridge University Press, Cambridge, UK, p. 217-257. Parker RO & Ross SW (1986) Observing reef fishes from submersibles off North Carolina. Northeast Gulf Science 8: 31-50. Parrish FA (1989) Identification of habitat of juvenile snappers in Hawaii. Fishery Bulletin 87: 1001-1005.. 260.
(17) Parrish FA & Boland RC (2004) Habitat and reef-fish assemblages of banks in the Northwestern Hawaiian Islands. Marine Biology 144: 1065-1073. Pauly D & Chuenpagdee R (2003) Development of fisheries in the Gulf of Thailand Large Marine Ecosystem: Analysis of an unplanned experiment. In: Hempel G & Sherman K (eds.) Large Marine Ecosystems of the world: Trends in expoliotation, protection and research, Vol 12. Elsevier, Amsterdam, p. 337-354. Pauly D, Watson R & Alder J (2005) Global trends in world fisheries: Impacts on marine ecosystems and food security. Philosophical Transactions of the Royal Society B – Biological Sciences 360: 5-12. Pikitch EK, Santora C, Babcock EA, Bakun A, Bonfil R, Conover DO, Dayton P, Doukakis P, Fluharty D, Heneman B, Houde ED, Link J, Livingston PA, Mangel M, McAllister MK, Pope J & Sainsbury KJ (2004) Ecosystem-based fishery management. Science 305: 346347. Pitcher CR, Burridge CY, Wassenberg TJ, Hill BJ & Poiner IR (2009) A large scale BACI experiment to test the effects of prawn trawling on seabed biota in a closed area of the Great Barrier Reef Marine Park, Australia. Fisheries Research 99: 168-183. Pitcher CR, Doherty P, Arnold P, Hooper J, Gribble N, Bartlett C, Browne M, Campbell N, Cannard T, Cappo M, Carini G, Chalmers S, Cheers S, Chetwynd D, Colefax A, Coles R, Cook S, Davie P, De'ath G, Devereux D, Done B, Donovan T, Ehrke B, Ellis N, Ericson G, Fellegara I, Forcey K, Furey M, Gledhill D, Good N, Gordon S, Haywood M, Hendriks P, Jacobsen I, Johnson J, Jones M, Kinninmoth S, Kistle S, Last P, Leite A, Marks S, McLeod I, Oczkowicz S, Robinson M, Rose C, Seabright D, Sheils J, Sherlock M, Skelton P, Smith D, Smith G, Speare P, Stowar M, Strickland C, Van der Geest C, Venables W, Walsh C, Wassenberg T, Welna A & Yearsley G (2007) Seabed Biodiversity on the Continental Shelf of the Great Barrier Reef World Heritage Area. CSIRO, Brisbane, Queensland. Pitcher CR, Doherty PJ & Anderson TJ (2008) Seabed environments, habitats and biological assemblages. In: Hutchings PA, Kingsford MJ & Hoegh-Guldberg O (eds.) The Great Barrier Reef: Biology, environment and management. CSIRO Publishing and Springer, p. 51-58. Pitcher CR, Poiner IR, Hill BJ & Burridge CY (2000) Implications of the effects of trawling on sessile megazoobenthos on a tropical shelf in northeastern Australia. Ices Journal of Marine Science 57: 1359-1368.. 261.
(18) Pitcher CR, Venables W, Ellis N, McLeod I, Pantus F, Austin M, Cappo M, Doherty P & Gribble N (2002) GBR Seabed Biodiversity Mapping Project: Phase 1. Report to CRC Reef Research Centre by the CSIRO, Australian Institute of Marine Science and Queensland Department of Primary Industries and Fisheries, Queensland, Australia. Pitcher CR, Wassenberg TJ, Smith GP, Cappo M, Hooper JNA & Doherty PJ (1999) Innovative new methods for measuring the natural dynamics of some structurally dominant tropical sponges and other sessile fauna. Memoirs of the Queensland Museum 44: 479-484. Polunin NVC (1996) Trophodynamics of reef fisheries productivity. In: Polunin NVC & Roberts CM (eds.) Reef Fisheries. Chapman and Hall, London, p. 113-135. Pratchett MS, Munday PL, Wilson SK, Graham NAJ, Cinner JE, Bellwood DR, Jones GP, Polunin NVC & McClanahan TR (2008) Effects of climate-induced coral bleaching on coral-reef fishes: Ecological and economic consequences. In: Oceanography and Marine Biology: An Annual Review. Volume 46, p. 251-296. Priede IG, Bagley PM, Smith A, Creasey S & Merrett NR (1994) Scavenging deep demersal fishes of the Porcupine Seabight, north-east Atlantic: Observations by baited camera, trap and trawl. Journal of the Marine Biological Association of the United Kingdom 74: 481498. Priede IG & Merrett NR (1996) Estimation of abundance of abyssal demersal fishes: A comparison of data from trawls and baited cameras. Journal of Fish Biology 49: 207-216. Priede IG, Smith KL & Armstrong JD (1990) Foraging behaviour of abyssal grenadier fish: Inferences from acoustic tagging and tracking in the North Pacific Ocean. Deep-Sea Research Part II. Topical Studies in Oceanography 37: 81-101. Putt RE, Gettleson DA & Phillips NW (1986) Fish assemblages and benthic biota associated with natural hard-bottom areas in the northwestern Gulf of Mexico. Northeast Gulf Science 8: 51-64. ‘R’ Development Core Team (2006) R: A language and environment for statistical computing. Reference. Index.. R. Foundation. for. Statistical. Computing:. http://cran.r-. project.org/doc/manuals/refman.pdf Ralston S, Gooding RM & Ludwig GM (1986) An ecological survey and comparison of bottom fish resource assessments (submersible versus handline fishing) at Johnston Atoll. Fishery Bulletin 84: 141-156. Ramm DC, Mounsey RP, Xiao Y & Poole SE (1993) Use of a semi-pelagic trawl in a tropical demersal trawl fishery. Fisheries Research 15: 301-313.. 262.
(19) Ramm DC, Pender PJ, Willing RS & Buckworth RC (1990) Large-scale spatial patterns of abundance within the assemblage of fish caught by prawn trawlers in northern Australian waters. Australian Journal of Freshwater Research 41: 79-95. Ramm DC & Xiao Y (1995) Herding in groundfish and effective path width of trawls. Fisheries Research 24: 243-259. Reed JK, Koenig CC & Shepard AN (2007) Impacts of bottom trawling on a deep-water Oculina coral ecosystem off Florida. Bulletin of Marine Science 81: 481-496. Ridgeway G (2000) Additive logistic regression: A statistical view of boosting – Discussion. Annals of Statistics 28: 393-400. Ridgeway G (2007) gbm: Generalized Boosted Regression Models. URL: http://wwwipensiericom/gregr/gbmshtml Robbins WD, Hisano M, Connolly SR & Choat JH (2006) Ongoing collapse of coral-reef shark populations. Current Biology 16: 2314-2319. Robinson GR (1987) Negative effects of the 1982-83 El-Niño on Galapagos marine life. Oceanus 30: 42-48. Rohde K (1998) Latitudinal gradients in species diversity. Area matters, but how much? Oikos 82: 184-190. Rohde K (1999) Latitudinal gradients in species diversity and Rapoport's rule revisited: A review of recent work and what can parasites teach us about the causes of the gradients? Ecography 22: 593-613. Rooper CN (2008) An ecological analysis of rockfish (Sebastes spp.) assemblages in the North Pacific Ocean along broad-scale environmental gradients. Fishery Bulletin 106: 1-11. Royston P (1982) An extension of Shapiro and Wilk's W test for normality to large samples. Applied Statistics 31: 115-124. Russ G (1984) Distribution and abundance of herbivorous grazing fishes in the central GreatBarrier-Reef. II. Patterns of zonation of mid-shelf and outershelf reefs. Marine Ecology Progress Series 20: 35-44. Russell DJ & McDougall AJ (2005) Movement and juvenile recruitment of mangrove jack, Lutjanus argentimaculatus (Forsskal), in northern Australia. Marine and Freshwater Research 56: 465-475. Sainsbury KJ, Campbell RA, Lindholm R & Whitelaw AW (1997) Experimental management of an Australian multispecies fishery: Examining the possibility of trawl induced habitat. 263.
(20) modification. In: Pikitch EL, Huppert DD & Sissenwine MP (eds.) Global Trends: Fisheries Management American Fisheries Society Symposium 20, Bethesda, p. 107-112. Sainsbury KJ, Campbell RA & Whitelaw AW (1992) Effects of trawling on the marine habitat on the North-West Shelf of Australia and implications for sustainable fisheries management. In: Hancock DA (ed.) Sustainable fisheries through sustaining fish habitat, Australian Society for Fish Biology Workshop. Bureau of Resource Sciences Proceedings, Victor Harbour, SA, p. 137-145. Sainsbury KJ & Whitelaw AW (1984) Biology of Peron’s threadfin bream, Nemipterus peronii (Valenciennes), from the northwest shelf of Australia. Australian Journal of Marine and Freshwater Research 35: 167-185. Sainte-Marie B & Hargrave BT (1987) Estimation of scavenger abundance and distance of attraction to bait. Marine Biology 94: 431-433. Salas S, Chuenpagdee R, Seijo JC & Charles A (2007) Challenges in the assessment and management of small-scale fisheries in Latin America and the Caribbean. Fisheries Research 87: 5-16. Sale PF (2002) The science we need to develop for more effective management. In: Sale PF (ed.) Coral reef fishes: Dynamics and diversity in a complex ecosystem. Academic Press, London, p. 361-376. Scanlon KM, Coleman FC & Koenig CC (2005) Pockmarks on the outer shelf in the northern Gulf of Mexico: Gas-release features or habitat modifications by fish? Benthic Habitats and the Effects of Fishing 41: 301-312. Scanlon KM, Koenig CC, Coleman FC & Miller M (2003) Importance of geology to fisheries management: Examples from the northeastern Gulf of Mexico. Fisheries, Reefs, and Offshore Development 36: 95-99. Sheaves M (2009) Consequences of ecological connectivity: The coastal ecosystem mosaic. Marine Ecology Progress Series 391: 107-115. Sherman K, Ajayi T, Anang E, Cury P, Pierre Freon MCM, Hardman-Mountford NJ, Ibe CA, Koranteng KA, McGlade J, Cornelia Nauen CEC, Pauly D, Scheren PAGM, Skjoldal HR, Tang Q, Zabi SG & Diaz-de-Leon AJ (2003) Suitability of the large marine ecosystem concept. Fisheries Research 64: 197-204. Shortis M, Harvey E & Abdo D (2009) A review of underwater stereo-image measurement for marine biology and ecology applications. Oceanography and Marine Biology: An Annual Review 47: 257-292.. 264.
(21) Smith KF & Brown JH (2002) Patterns of diversity, depth range and body size among pelagic fishes along a gradient of depth. Global Ecology and Biogeography 11: 313-322. Smith TM, Hindell JS, Jenkins GP & Connolly RM (2008) Edge effects on fish associated with seagrass and sand patches. Marine Ecology Progress Series 359: 203-213. Smithers BV, Peck DR, Krockenberger AK & Congdon BC (2003) Elevated sea-surface temperature, reduced provisioning and reproductive failure of wedge-tailed shearwaters (Puffinus pacificus) in the southern Great Barrier Reef, Australia. Marine and Freshwater Research 54: 973-977. Soberon J & Llorente J (1993) The use of species accumulation functions for the prediction of species richness. Conservation Biology 7: 480-488. Spalding MD & Grenfell AM (1997) New estimates of global and regional coral reef areas. Coral Reefs 16: 225-230. Stevens GC (1996) Extending Rapoport's rule to Pacific marine fishes. Journal of Biogeography 23: 139-148. Stobart B, Garcia-Charton JA, Espejo C, Rochel E, Goni R, Renones O, Herrero A, Crec'hriou R, Polti S, Marcos C, Planes S & Perez-Ruzafa A (2007) A baited underwater video technique to assess shallow-water Mediterranean fish assemblages: Methodological evaluation. Journal of Experimental Marine Biology and Ecology 345: 158-174. Stobutzki I, Miller M & Brewer D (2001a) Sustainability of fishery bycatch: A process for assessing highly diverse and numerous bycatch. Environmental Conservation 28: 167181. Stobutzki IC, Miller MJ, Heales DS & Brewer DT (2002) Sustainability of elasmobranchs caught as bycatch in a tropical prawn (shrimp) trawl fishery. Fishery Bulletin 100: 800821. Stobutzki IC, Miller MJ, Jones P & Salini JP (2001b) Bycatch diversity and variation in a tropical Australian penaeid fishery: The implications for monitoring. Fisheries Research 53: 283-301. Stobutzki IC, Silvestre GT, Abu Talib A, Krongprom A, Supongpan M, Khemakorn P, Armada N & Garces LR (2006) Decline of demersal coastal fisheries resources in three developing Asian countries. Fisheries Research 78: 130-142. Stoner AW, Laurel BJ & Hurst TP (2008a) Using a baited camera to assess relative abundance of juvenile Pacific cod: Field and laboratory trials. Journal of Experimental Marine Biology and Ecology 354: 202-211.. 265.
(22) Stoner AW , Ryer CH, Parker SJ, Auster PJ & Wakefield WW (2008b) Evaluating the role of fish behavior in surveys conducted with underwater vehicles. Canadian Journal of Fisheries and Aquatic Sciences 65: 1230-1243. Syms C & Jones GP (2000) Disturbance, habitat structure, and the dynamics of a coral-reef fish community. Ecology 81: 2714-2729. Syms C & Kingsford MJ (2009) Coral Reef Habitats and Assemblages. In: Hutchings P, Kingsford M & Hoegh-Guldberg O (eds.) Great Barrier Reef: Biology, Environment and Management. CSIRO Publishing, p. 40-50. Taylor JD (1997) Diversity and structure of tropical Indo-Pacific benthic communities: Relation to regimes of nutrient input. In: Ormond RFG, Gage JD & Angel MV (eds.) Marine biodiversity: Patterns and processes. Cambridge University Press, Cambridge, UK, p. 178-200. Thompson GG & Withers PC (2003) Effect of species richness and relative abundance on the shape of the species accumulation curve. Austral Ecology 28: 355-360. Thorrold SR & McKinnon AD (1995) Response of larval fish assemblages to a riverine plume in coastal waters of the central Great-Barrier-Reef Lagoon. Limnology and Oceanography 40: 177-181. Thresher RE, Sainsbury KJ, Gunn JS & Whitelaw AW (1986) Life-history strategies and recent changes in population-structure in the lizardfish genus, Saurida, on the Australian Northwest Shelf. Copeia 4: 876-885. Thrush SF, Gray JS, Hewitt JE & Ugland KI (2006) Predicting the effects of habitat homogenization on marine biodiversity. Ecological Applications 16: 1636-1642. Tonks ML, Griffiths SP, Heales DS, Brewer DT & Dell Q (2008) Species composition and temporal variation of prawn trawl bycatch in the Joseph Bonaparte Gulf, northwestern Australia. Fisheries Research 89: 276-293. Torres LG (2009) A kaleidoscope of mammal, bird and fish: Habitat use patterns of top predators and their pretty in Florida Bay. Marine Ecology Progress Series 375: 289-304. Tyre AJ, Tenhumberg B, Field SA, Niejalke D, Parris K & Possingham HP (2003) Improving precision and reducing bias in biological surveys: Estimating false-negative error rates. Ecological Applications 13: 1790-1801. Underwood AJ (1998) Experiments in ecology. Their logical design and interpretation using analysis of variance, Vol. Cambridge University Press, Cambridge, UK. 266.
(23) Vanderklift MA, How J, Wernberg T, MacArthur LD, Heck KL & Valentine JF (2007) Proximity to reef influences density of small predatory fishes, while type of seagrass influences intensity of their predation on crabs. Marine Ecology Progress Series 340: 235-243. Venables WN & Dichmont CM (2004) GLMs, GAMs and GLMMs: An overview of theory for applications in fisheries research. Fisheries Research 70: 319-337. Venables WN & Ripley BD (2002) Modern Applied Statistics with S, Vol. Springer. Ver Hoef JM & Boveng PL (2007) Quasi-poisson vs. negative binomial regression: how should we model overdispersed count data? Ecology 88:2766- 2772. [doi:10.1890/07-0043.1] Ward J (1988) Mesh size selection in Antillean arrowhead fish traps. FAO Fish Report 389, pp. 455-467. Ward TJ, Vanderklift MA, Nicholls AO & Kenchington RA (1999) Selecting marine reserves using habitats and species assemblages as surrogates for biological diversity. Ecological Applications 9: 691-698. Warwick RM & Clarke KR (1998) Taxonomic distinctness and environmental assessment. Journal of Applied Ecology 35: 532-543. Wassenberg TJ, Blaber SJM, Burridge CY, Brewer DT, Salini JP & Gribble N (1997) The effectiveness of fish and shrimp trawls for sampling fish communities in tropical Australia. Fisheries Research 30: 241-251. Watson DL, Anderson MJ, Kendrick GA, Nardi K & Harvey ES (2009) Effects of protection from fishing on the lengths of targeted and non-targeted fish species at the Houtman Abrolhos Islands, Western Australia. Marine Ecology Progress Series 384: 241-249. Watson DL, Harvey ES, Anderson MJ & Kendrick GA (2005) A comparison of temperate reef fish assemblages recorded by three underwater stereo-video techniques. Marine Biology 148: 415-425. Watson DL, Harvey ES, Kendrick GA, Nardi K & Anderson MJ (2007) Protection from fishing alters the species composition of fish assemblages in a temperate-tropical transition zone. Marine Biology 152: 1197-1206. Watson R, Dredge MLC & Mayer DG (1990) Spatial and seasonal variation in demersal trawl fauna associated with a prawn fishery on the central Great Barrier Reef, Australia. Australian Journal of Freshwater Research 41: 65-77.. 267.
(24) Watson R, Pauly D, Christensen V, Froese R, Longhurst A, Platt T, Sathyendranath S, Sherman K, O'Reilly J & Celone P (2003) Mapping fisheries onto marine ecosystems for regional, oceanic and global integrations. In: Hempel G & Sherman K (eds.) Large Marine Ecosystems of the World: Trends in Exploitation, Protection and Research, Vol 12. Elsevier, Amsterdam, p. 375-395. Wedding LM, Friedlander AM, McGranaghan M, Yost RS & Monaco ME (2008) Using bathymetric lidar to define nearshore benthic habitat complexity: Implications for management of reef fish assemblages in Hawaii. Remote Sensing of Environment 112: 4159-4165. Wells RJD, Boswell KA, Cowan JH & Patterson WF (2008) Size selectivity of sampling gears targeting red snapper in the northern Gulf of Mexico. Fisheries Research 89: 294-299. Wells RJD & Cowan JH (2007) Video estimates of red snapper and associated fish assemblages on sand, shell, and natural reef habitats in the north-central Gulf of Mexico. Red Snapper Ecology and Fisheries in the US Gulf of Mexico 60: 39-57. Wernberg T, Vanderklift MA, How J & Lavery PS (2006) Export of detached macroalgae from reefs to adjacent seagrass beds. Oecologia 147: 692-701. Westera M, Lavery P & Hyndes G (2003) Differences in recreationally targeted fishes between protected and fished areas of a coral reef marine park. Journal of Experimental Marine Biology and Ecology 294: 145-168. Whitelaw AW, Sainsbury KJ, Dews GJ & Campbell RA (1991) Catching characteristics of four fish-trap types on the North West Shelf of Australia. Australian Journal of Freshwater Research 42: 369-382. Wilkinson CR & Cheshire AC (1988) Cross shelf variations in coral reef structure and functioninfluences of land and ocean. In: Choat JH & Barnes D (eds.) Proceedings of the 6th International Coral Reef Symposium. International Coral Reef Symposium Executive Committee, Townsville, p. 227-233. Williams A & Bax NJ (2001) Delineating fish-habitat associations for spatially based management: An example from the south-eastern Australian continental shelf. Marine and Freshwater Research 52: 513-536. Williams A, Bax NJ, Kloser RJ, Althaus F, Barker B & Keith G (2009) Australia's deep-water reserve network: Implications of false homogeneity for classifying abiotic surrogates of biodiversity. Ices Journal of Marine Science 66: 214-224.. 268.
(25) Williams DM (1991) Patterns and processes in the distribution of coral reef fishes. In: Sale PF (ed.) The ecology of fishes on coral reefs. Academic Press San Diego, California, p. 437474. Williams DM & Hatcher AI (1983) Structure of fish communities on outer slopes of inshore, mid-shelf and outer shelf reefs of the Great Barrier Reef. Marine Ecology Progress Series 10: 239-250. Willis TJ & Babcock RC (2000) A baited underwater video system for the determination of relative density of carnivorous reef fish. Marine and Freshwater Research 51: 755-763. Willis TJ, Millar RB & Babcock RC (2000) Detection of spatial variability in relative density of fishes: comparison of visual census, angling, and baited underwater video. Marine Ecology Progress Series 198: 249-260. Wilson GG (1998) A description of the early juvenile colour patterns of 11 Lethrinus species (Pisces: Lethrinidae) from the Great Barrier Reef, Australia. Records of the Australian Museum 50: 55-83. Wismer S, Hoey AS & Bellwood DR (2009) Cross-shelf benthic community structure on the Great Barrier Reef: Relationships between macroalgal cover and herbivore biomass. Marine Ecology Progress Series 376: 45-54. Wolanski E (1994) Physical oceanographic processes of the Great Barrier Reef, Vol. CRC Press, Boca Raton, Florida. Yau C, Collins MA, Bagley PM, Everson I, Nolan CP & Priede IG (2001) Estimating the abundance of Patagonian toothfish Dissostichus eleginoides using baited cameras: A preliminary study. Fisheries Research 51: 403-412. Yearsley GK, Last PR & Morris GB (1997) Codes for Australian Aquatic Biota (CAAB): An upgraded and expanded species coding system for Australian fisheries databases, CSIRO, Australia, Hobart, Tasmania. Yoklavich MM, Greene HG, Cailliet GM, Sullivan DE, Lea RN & Love MS (2000) Habitat associations of deep-water rockfishes in a submarine canyon: An example of a natural refuge. Fishery Bulletin 98: 625-641. Yoklavich MM, Love MS & Forney KA (2007) A fishery-independent assessment of an overfished rockfish stock, cowcod (Sebastes levis), using direct observations from an occupied submersible. Canadian Journal of Fisheries and Aquatic Sciences 64: 17951804.. 269.
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Not only is the sequence comparison procedure described here performed without recourse to dynamic programming alignment, but multiple layers of nested map-reduce distribution
Fig. Stress von maises stress is 252Mpa under the loading point The above shown result plot represents the stress in the chassis. It is more than the yield strength
Commissioners proposed, firstly, that a grant on'the average attendance of the children, should be paid by' the Committee of Council to the managers of ©vary school in which