Vol. 12, No. 5 JOURNAL OF CLINICAL MICROBIOLOGY, Nov.1980,p.684-689
0095-1137/80/1 1-0684/06$02.00/0
Evaluation
of the MS-2
System
for
Rapid Identification of
Enterobacteriaceae
A. W. McCRACKEN,'* W. J. MARTIN,2 L. R. McCARTHY,3 D. A. SCHWAB,4 B. H.
COOPER,'
N. G. P. HELGESON,' S. PROWANT,' ANDJ. ROBSON3
Department ofClinicalMicrobiology, BaylorUniversity Medical Center, Dallas, Texas75246';Department
of Pathology, Microbiology Section, University of California-Los Angeles Center forthe Health Sciences LosAngeles, California900242; ClinicalMicrobiologyLaboratories,NorthCarolinaMemorial Hospital,
ChapelHill,North Carolina27514';andScrippsMemorialHospital, Department of Pathology,Nuclear Medicine, La Jolla, California920374
The precision, accuracy, and other performance characteristics ofthe MS-2
(Abbott Laboratories, Diagnostic Division, Dallas, Tex.) systemfor the
identifi-cation of Enterobacteriaceae were evaluated ina collaborative study involving
three clinical laboratories. Whenidentifying 150unknown,codedorganisms,the MS-2 systemwas97%, 98%,and 93%accurate,respectively,in threelaboratories. The system showedanoverall accuracyof 94% whencomparedwithconventional
manual tube methodsinidentifying 1,154clinicalisolates of 26speciesof
Enter-obacteriaceae.Discrepanciesbetweenautomated andconventional methodswere
chieflycausedby biochemicalvariants, especiallyamong Enterobacter species.
TheMS-2systemwasrapidandsimpletooperate andproduced printed results
ofbacterial identification in 5 h. The cost ofdisposable components compared favorably with commercial, visuallyreadsystems for identifying
Enterobacteri-aceae.
Automation
hasbeensuccessfully applied
tomostclinical
microbiological methods,
including
antimicrobial susceptibility testing, blood
cul-ture
monitoring, detecting urinary
tract infec-tionand,
lately, identifying
bacteria.Identifica-tion
ofgram-negative rods, especially
Entero-bacteriaceae,
isamajor
function of the clinicalmicrobiology laboratory
andisperformed
both as aguide
to antimicrobial treatment and forepidemiological
purposes. Arapid,
precise,
and accurate automated method of identificationcould, therefore,
have considerable valueindi-agnostic
bacteriology.
Vannestand his
colleagues (R.
D.Vannest,
D.Brunson, M.
Cornell,
H.Terk,
B.Perry,
andR.Wilborn,
Abstr. Annu. Meet. Am. Soc.Micro-biol.
1979,C(H)86,
p.360) reported
apreliminary
study of
rapid,
automated identification ofen-teric
bacteria
using
the MS-2(Abbott
Labora-tories,
Diagnostic Division,
Dallas,
Tex.)
system.Variations of this system have also been
applied
to
antimicrobial
susceptibility testing (H.
J.Spencer,
P.Welaj,
R.Vannest,
V.Hargrove,
and L.Williams,
Abstr. Annu. Meet. Am. Soc.Mi-crobiol. 1978,
C204,
p.310; L. R.McCarthy,
J.C.Sherris,
and J. P.Anhalt,
Abstr. Annu. Meet.Am.Soc. Microbiol. 1978,
C205,
p.310),
screen-ing for
urinary
tractinfection(L.
R.McCarthy,
C. L.
Corlett,
and J. A.Robson,
Abstr. Annu.Meet.Am.Soc. Microbiol.
1979,
C(H)95,
p.362),
andmonitoring of blood cultures (R. L. Holland,
N. G. P. Helgeson, A. W. McCracken, and B. H.
Cooper,
Abstr. Annu. Meet. Am. Soc. Microbiol.1979,C4, p. 310). The present paper describes a
collaborative study at three medical centers (Baylor University Medical Center, UCLA
Med-ical
Center, and University of North Carolina)toevaluate the MS-2 system for rapid
identifi-cationof Enterobacteriaceae.
MATERIALS AND METHODS
MS-2system.The MS-2system used inthis study consisted of the following components: an analysis
module, a control module, a bacterial identification cartridge, an actuator, and an inoculum dispenser.
(i) Analysismodule. The analysis module is both anelectro-optical scanning device and an
incubator-shaker. The latterfunction is required for
antimicro-bialsusceptibilitytesting and urine screening, both of
which can be performed simultaneously with bacterial identification. The electro-optical scanning system consistsoflight-emitting diodes (which emit light at a wavelength of 665 nm) and matched photodetectors.
Theanalysis module has eight positions. Position 8 is used for bacterial identification. Positions1through 7 are used for antimicrobial susceptibility testing and
urinescreening.
(ii) Control module.The controlmodule contains amicroprocessor and performs the followingfunctions: (a)controls the operationof theanalysismodule, (b) stores data obtained from the analysis module, (c) identifies bacteria byapplying data from the analysis 684
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MS-2 BACTERIAL IDENTIFICATION SYSTEM 685 moduleto aprobabilitymatrix, and (d)printsoutthe
resultsofbacterial identification.
(iii) Bacterial identification cartridge. This cartridge isadisposable plastic containerconsistingof 20optically clear chambers. Seventeen chambers con-tainlyophilized biochemical substratesand,withone
exception, indicators whichchangecolorinresponse
tothemetabolic reactions of thetestorganism. The exception is chamber18which is usedtodetect indole production andtowhich0.05ml of Kovacsreagent is added after incubation. Chamber 17is leftemptyto
reduce the risk ofadding Kovacs reagenttothewrong chamber. Chambers 19 and 20 arealso empty. The activesubstances in the identificationcartridgesand theirreactionsarelisted in Table1.The17reactions wereselected for theirabilityto distinguishbetween pairs of bacterial speciesandtogivedefinitive reac-tions within 5 h in the MS-2 system. Identification cartridgesarestoredat2to8°Cuntil used.
Before use, one cartridge from each shipment is testedbyrehydration ofchambers9and 16
(L-arabi-noseandD-xylose,respectively)with0.2mlofsterile,
deionizedwater. Theresultant colors are compared with a standard color chart. Significant differences from thechart indicate that thecartridgesmay have
beendamaged byoverheating during shipping.
(iv) Actuator. Theactuatoris
placed
inposition8of theanalysis module where it stabilizes the car-tridge and aligns it correctly for transmitted light readingstobe taken.
(v) Dispenser. Thedispenseruses a5-ml
dispos-ablesyringe calibratedtodeliver0.2ml ofa
standard-izedsuspensionof bacteriatoeachfunctional chamber
of theidentificationcartridge.
Method for bacterial identificationbythe
MS-2 system.Eighteen- totwenty-four-hour cultures of TABLE 1. Active biochemicalsinMS-2 identificationcartridgesandtheirreactions
Testcon- Reaction
Chami- Active substance.centration
c
berno. ( wt/
vol)
1 Glucose 1.0 Fermentation'
2 Lysine 1.0 Decarboxylation' hydrochloride
3 Ornithine 1.0 Decarboxylation' hydrochloride
4 Sodium citrate 0.2 Utilization
5 Sodium malonate 0.5 Utilization
6 Esculin 0.125 Hydrolysis
7 Urea 2.0 Hydrolysis
8 Adonitol 1.0 Fermentation 9 L-Arabinose 2.0 Fermentation
10 i-Inositol 2.0 Fermentation
11 Lactose 2.0 Fermentation
12 Mannitol 2.0 Fermentation
13 L-Rhamnose 0.5 Fermentation
14 Sorbitol 2.0 Fermentation
15 Sucrose 2.0 Fermentation
16 D-Xylose 0.5 Fermentation
17 Empty
18 L-Tryptophan 0.125 Indoleproduction
19 Empty
20 Empty
aSealedtoprovidereducedoxygentension.
test organisms are obtained from blood agar plates, andanoxidase test is performed on each.All oxidase-positive bacteria are excluded.
Representative colonies of the test organism are touched with a sterile loop, transferred to 5 ml of sterile,deionized water,andblended in a Vortex mixer. This step isrepeated until the turbidity of the suspen-sion visually matches a 0.5McFarland barium sulfate standard. Within30min ofpreparation, 0.2ml of the bacterial suspension is delivered into each chamber of the identification cartridges. Chambers 1, 2, and 3, containing glucose, lysine, and ornithine,respectively,
aresealedwith polyester filmtoprovideconditions of reduced oxygen tension.
The cartridges are placed in the actuator in position
8intheanalysis module. The system is activated by a series ofkeyboard entries which are sequentially prompted by instructions in the print-out. Among the entries areinformation for specimen identification and dateand time of testing.
Initial readings of transmitted light are taken au-tomatically for each chamber, and the data for each organism are stored in the control module. The car-tridge is then removed, placed in an incubator at 35 to 37°C for5h,andreinserted into the analysis module for the final reading. The print-out of the data in-cludes: (i) the assignment of a positive or negative sign
toeach biochemical test; (ii) the identity of the organ-ism (up to fiveorganisms are listed in descending order oflikelihood);and (iii) a percent likelihood value for each organismlisted. Percent likelihood is an expres-sion of the degree ofseparation between organisms as defined by the formula: probability of first choice organism/sum ofprobabilities of allorganisms in data base x 100. When the likelihood of a correct identifi-cation is low, the print-out includes the following message: "Warning: low assurance of identification. Percent likelihood is less than 80%."
Evaluation of precision and accuracy. In the first phase of this study, theprecision of the MS-2 system wasassessed in thefollowing way.
Atotal of 150strainsofEnterobacteriaceae were givento eachlaboratory as unknown, coded samples. The150organisms were identified in parallel by the MS-2 and byaseries ofconventional tube tests (Table 2). With the conventional tests, identification was madeby reference to Edwards and Ewing (4). During thisphase, for reasonsdiscussed later, modifications weremade to theidentification algorithm of the
MS-2.
In the second phase,theaccuracy of the MS-2 was evaluated by testing 1,154 strains of Enterobacteria-ceaeobtainedfrom clinical sources with the MS-2 and conventional methods as described for phase 1. In-cludedwere26species ofEnterobacteriaceaein num-bersthat reflected their relative frequency of isolation from clinicalspecimens.
Allorganisms tested during this studywerestored
at-60°C indefibrinated blood for later use in clari-fying inter- or intra-laboratory discrepancies. In the
secondphase,whentherewasdisagreement between
theMS-2andconventional identification, both
meth-odswererepeated.Ifthere was stilldisagreement, the organism was submitted to the manufacturer who VOL.12,1980
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686 McCRACKEN ET AL.
TABLE 2. Reactions in conventional tubed media usedfor identificationof Enterobacteriaceae(6)a
Biochemical reaction Medium Fermentation of:
Arabinose Glucose Lactose Rhamnose Sucrose Xylose Adonitol Inositol Mannitol
Sorbitol
Dulcitol
Control
Decarboxylationof:
Lysine Ornithine
Control Utilization of:
Acetate Citrate Malonate Other tests:
Ureahydrolysis Voges-Proskauer
reac-tion
Esculin reduction
Phenylalanine deami-nation
Indoleproduction Deoxyribonuclease
production
Dextrose, lactose, and
sucrose
fermenta-tion andH2S
produc-tion
Motility
Oxidaseproduction
Fermentation broth base withAndradeindicator plus carbohydrate sub-strate
Fermentationbrothbase
with Andrade indicator
Moeller base plus amino
acidsubstrate Moellerbase
Acetateagar Simmonscitrateagar Malonatebroth
Christensenureaagar Methyl
red-Voges-Pros-kauer broth
Esculin broth
Phenylalanineagar
Indoletestbroth DNasetestmedium Triplesugarironagar
Motilitytestmedium Patho-Tecb
aUnless otherwise noted, the methods listed are
basedonthosein reference6.
bGeneralDiagnostics,Warner-LambertCo.,Morris Plains,N.J.
recodedand reissued itas anunknown forrepeatof conventional identification by allthree laboratories. The final identification of a controversial organism wasthatonwhich at least two laboratoriesagreed.If allthreestilldisagreed, asubcultureoftheorganism
wassent toareferencelaboratorywhose identification
wasacceptedasfinal.
RESULTS
Theaccuracyof the MS-2systemand
conven-tionalidentifications in allthreelaboratoriesis
shownin Table3.The MS-2resultswerethose
obtained after modifications had been madeto
the identification algorithm. The precision of
identification of150 bacterial strains by MS-2
and by conventional methods is compared in
Table 4. With the MS-2, all three laboratories
correctlyidentified 135 (90%) organisms.
Of
the150 strains, 148 (99%) were correctly identified
byatleasttwoofthe three laboratories.
The results of identification by conventional
methodswereverysimilartothoseobtained by
MS-2. Ail three laboratories agreedonthe
cor-rectidentity of 136 (91%) of the 150strains,and
atleasttwoofthe three laboratories agreedon
the identity of
all
150strains. Correctidentifi-cationwasachieved in 149(99%) strains.
A comparison by species of automated and
conventional identifications of 1,154 strains of
Enterobacteriaceae isolated
fromclincal
speci-mensin all threelaboratories combinedisshown
in Table 5. In assessing accuracy, the correct
identification was taken as that obtained by
conventional methodson whichatleasttwoof
TABLE 3. Accuracy ofidentification byMS-2 and conventional methodsof150strainsof Enterobacteriaceae in three laboratories
No.of No. of
correct incorrect No.not
Site Method identifica- identifi- identi-tions(%)
cations
fied
(%)BUMC' MS-2 146(97) 4(3) 0(0) Conventional 145(97) 4(3) i (<1) UNCb MS-2 147(98) 3(2) 0(0)
Conventional 149(99) 1(cl) O(O) UCLAC MS-2 139(93) 8(5) 3(2)
Conventional 141(94) 8(5) 1(<1)
aBaylorUniversityMedical Center.
bUniversity ofNorthCarolina.
cUCLA Medical Center.
TABLE 4. Precisionof identificationby MS-2 and conventional methodsof150strainsof Enterobacteriaceae in three laboratories
No.(%)identified by: Precisionof identification
Conven-MS-2 tional method Correctly identified in all 135(90) 136(91)
three laboratories
Correctly identified in two 13(9) 13(9) ofthreelaboratories
Incorrectly identified intwo ia (<1) la(<1) of three laboratories
Incorrectly identified in ail la(<1) 0(0)
three laboratories
aSamefirstchoice in bothorall laboratories.
J. CLIN. MICROBIOL.
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688 McCRACKEN ET AL.
the three laboratories agreed. With the MS-2,
1,080 (94%) isolates were
correctly
identified,and no identification was made in 11
(1%)
in-stances. Of the 63
(5%)
discrepancies,
40 werecorrectly
identifiedby
MS-2 as the secondchoice.
Moreover,
in21of the40secondchoices,
the
print-out
containedawarning
of low percentlikelihood
(less
than80%)
ofcorrectidentifica-tion of the first
choice,
indicating
a need forfurther testing.
Of
the 1,080 strainscorrectly
identified
by
MS-2asfirstchoice, only
86(8%)
were
accompanied by
thewarning
statementandwould have
required
furthertesting.
Table6shows the accuracy of the MS-2
sys-temin each of the three laboratories.
DISCUSSION
In a
preliminary
report(R.
D.Vannest,
D.Brunson, M.
Cornell,
H.Terk,
B.Perry,
and R.Wilborn,
Abstr. Annu. Meet.Am.
Soc.Micro-biol.
1979,C(H)86,
p.360),
when 296 strains ofenteric
bacteria were testedby
MS-2 andby
conventional
methods ofidentification,
therewas 95% agreement between the two methods.
In both
methods,
bacterialidentification
wasbased
ontheinterpretative
data ofEdwards andEwing (4)
and other similarsources(1,
3,
5).
Thepresent
collaborative
study
hasexpanded
andconfirmed
thefindings
of thepreliminary
report. Theprecision
of the MS-2 inidentifying
150strains
ofEnterobacteriaceae exceeded 90% inthe three
laboratories,
and the accuracyranged
from93 to98% when the
programming changes
discussed
below
weremade.The
MS-2 with
modified software hadanac-curacy of 94% in
identifying
1,154
strains ofEnterobacteriaceae. This is
similar
to theac-curacy
reported
for commercial identificationsystems whichareread
visually
after4h(1,
2)
or
overnight
incubation(7,
9,
10).
Only
afew strains of severaluncommonspe-cies,
notably
Serratiarubidaea,
Klebsiella
ozaenae,
Klebsiella
rhinoscleromatis,
andYer-sinia
enterocolitica,
were tested. Noexamples
of Aeromonas
hydrophila,
Plesiomonasshigel-loides, Yersinia
pseudotuberculosis,
orPasteu-TABLE 6. AccuracyofMS-2identificationin three laboratories
No. of No.not
,s. t ~No.cor- No.incor- N.fo Site strains
N.crect
<inco>rec
identifiedtested (%) react(%) react(%) BUMC« 371 (100) 350(94) 21(6) 0 UNCb 371(100) 342(92) 23(6) 6 (2)
UCLAC 412(100) 388(94) 19(5) 5(1) aBaylorUniversityMedical Center.
bUniversityof NorthCarolina. cUCLA Medical Center.
rella
species
wereincluded. Further studies arerequired to evaluate theperformance of the
MS-2with these organisms.
Although not a member of the family
Enter-obacteriaceae, Acinetobacter calcoaceticus
(formerly var. anitratus-this study was
com-pleted before the publication of the Approved
Lists ofBacterial Names [8]) was included in
the data base of the instrument because it is
oxidase negative and gives a positive glucose reaction in the MS-2.
There were several reasons for adjusting the
programming of the control module during the
first phase ofthis study. First, the threshold of
positivity for eachbiochemical reaction was
ad-justed so that the MS-2 interpretation closely
matched that from conventional tubed media.
Second, the program which compared the set of
biochemical reactions of each organism to a
matrix of the expected positive reactions was
originally based on data from the Center for Disease Control, Atlanta, Ga. (3, 5). As data
from the MS-2 became available, the reactivity
ofeachspecies in the variousbiochemical tests
was
determined,
andthe datamatrix was revisedwiththesefigures. Third, it was noted after the
threshhold had been adjusted and the data
ma-trix had been modified that a few strains of
certain species (for example,
Klebsiella
pneu-moniae and Serratia rubidaea) could not be
distinguished
from each other, largely becausethe teststrains of these species gave one or two
atypical
biochemical
reactions. In thesein-stances, the computeralgorithm was altered by
weighting specific biochemical
reactions
toachieve the correct identification.
The reasons for discrepancies between MS-2 and conventional methods are currently being
investigated.
Many of the disagreements wereamong the various
species
ofEnterobacter
(4 of11
non-identifications
and 30 of 63misidentifi-cations)
and mayreflect the variability ofbio-chemical
reactions
among members of thisge-nus. In six
instances,
Enterobacter cloacae wasmisidentified as an H2S-producing organism;
thus, the lack ofatest forH2S production may
account for some of these discrepancies. The
four discrepancies with Shigella species
in-volved Shigella sonnei that were
misidentified
as
Salmonella
enteritidis bioser.paratyphi A. Further MS-2 data on this organism must beaccumulated so that the program can be
ad-justedtodistinguish S. sonnei from S.paratyphi
A.
The manual
operations
involved in MS-2identification take less than 4 min and are at
leastassimpletoperform asconventional
meth-ods. The initial method for inoculation ofthe
J. CLIN. MICROBIOL.
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identification
cartridge by
apipette-syringe
as-sembly carried
somerisk of aerosol
formation,
contamination of the
tapecovering
the
cham-bers, and
skin
puncture from the
hypodermic
needle. These
disadvantages
werecorrected
by
modifications
tothe
dispenser
system.These
were:
(i) machine
perforation
of
the tapesealing
the chambers
of thecartridge,
and
(ii) dispensing
the
inoculum
with anautomatic
pipette
with
blunt
steriledisposable tips.
These modifications
also
eliminated the need
for adisposable
syringe
with
each
organism tested. The retail
price
for
each
disposable
cartridge
is
$2.10,
which is
sim-ilar
to that ofcartridges
used in commercialmanual methods for
identifying
Enterobacteri-aceae.
The
availability of bacterial identification
within
5hof
primary isolation
hasconsiderable
value
as aguide
to antimicrobialtherapy.
Inaddition
to ahigh
degree
of
physician
accept-ance,
rapid
identification
canbenefit the
clinical
laboratory
by
eliminating
the need for
prepara-tionand
distribution of
preliminary
reports.The
advantages
appeartobe
greatesttoboth
physi-cians and
laboratories when
rapid
identification
is
accompanied
by
antimicrobialsusceptibility
tests
also
performed
in 3 to 5h.
Atleast
twosystems,
MS-2 and
AutoBac I(Pfizer
Diagnos-tics,
NewYork),
canperform
susceptibility
stud-ies within this
period
of time.Entry
of results
into
data
processing
systems isalso
simplified
ifbacterial identification and
susceptibilities
areavailable
atthe
sametime
rather than
aday
apart.
ACKNOWLEDGMENTS
The technical expertise of Gene Marso (UCLA) and the secretarialskills of LauraCarroll (Baylor) are gratefully ac-knowledged.
Thisstudy was supported by a grant from the Abbott Corp.
LITERATURE CMD
1. Aldridge, K. E., B. B. Gardner, S. J. Clark, and J. M. Matsen.1978.Comparison of micro-ID, API 20E and conventional mediasystems inidentification of Enter-obacteriaceae. J. Clin. Microbiol. 7:507-513. 2. Buesching, W. J., D. L. Rhoden, A.O. Esaias, P. B.
Smith,and J. A.Washington Il. 1979. Evaluation of themodified micro-IDsystem for identification of En-terobacteriaceae. J. Clin. Microbiol. 10:454-458.
3. Darland, G., W. H. Ewing, and B. R. Davis. 1972. The biochemical characteristics ofYersiniaenterocolitica and Yersiniapseudotuberculosis. Center for Disease Control, Atlanta, Ga.
4. Edwards, P. R., and W. H. Ewing. 1972. Identification ofEnterobacteriaceae, 3rd ed.Burgess Publishing Co., Minneapolis, Minn.
5. Ewing, W. H. 1973.Differentiation of Enterobacteria-ceaeby biochemicalreactions.Center for Disease Con-trol, Atlanta, Ga.
6. Ewing, W. H., and B. R. Davis. 1970. Media and tests fordifferentiation of Enterobacteriaceae. U.S. Depart-mentof Health, Education and Welfare, National Com-municable Disease Center, Atlanta, Ga.
7.Nord, C. E., A. A. Lindberg, and A. Dahlback. 1974. Evaluation of fivetest-kits-API, AuxoTab, tube, PathoTec and R-B for identification of Entero-bacteriaceae. Med. Microbiol. Immunol.159:211-220. 8. Skerman, V. B. D.,V.McGowan, and P. H. A. Sneath
(ed.). 1980. Approved lists of bacterial names. Int. J. Syst. Bacteriol. 30:225-420.
9. Smith,P. B.1975.Performance of six bacterial identifi-cation systems. Center for Disease Control, Atlanta, Ga. 10. Smith, P. B., K. M. Tomfohrde, D. L. Rhoden, and A. Balows. 1972.APIsystem: amultitube micromethod foridentification of Enterobacteriaceae. Appl. Micro-biol. 24:449-452.
VOL.12,