accessory genome
Use of the Accessory Genome for Characterization and Typing of Acinetobacter baumannii
... Accessory genome profiles also provide information that may be clinically relevant, particularly in terms of resistance genes, virulence factors, and antigenic ...about accessory genes is combined ...
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The Pseudomonas aeruginosa accessory genome elements influence virulence towards Caenorhabditis elegans
... of accessory genome elements ...specific accessory genome elements ...core genome, in- cluding previously described ...particular accessory genome elements that contribute ...
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Extensive Within Host Diversity in Fecally Carried Extended Spectrum Beta Lactamase Producing Escherichia coli Isolates: Implications for Transmission Analyses
... the accessory genome were more likely to be similar across genetically distinct strains (represented here by clones and/or singletons [clones/singletons]) within an individual than strains between ...
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Inconsistency of Phenotypic and Genomic Characteristics of Campylobacter fetus Subspecies Requires Reevaluation of Current Diagnostics
... Comparative genomics of two C. fetus strains revealed several unique regions for both subspecies, as shown by Kienesberger et al. (9); C. fetus subsp. venerealis contained multiple unique regions representing insertion ...
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Population Dynamics of an Acinetobacter baumannii Clonal Complex during Colonization of Patients
... the accessory genome of these strains contained a large set of virulence-encoding genes and these virulence factors might play a role in determining population ...Microscale genome modification has ...
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The genome of Rhizobium leguminosarum has recognizable core and accessory components
... and accessory genomes is well illustrated by the large Rlv3841 genome with its multiple rep- licons, but this appears to be a widespread property of bacte- rial genomes ...core genome composition ...
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Comparative Genome Analyses of Vibrio anguillarum Strains Reveal a Link with Pathogenicity Traits
... whole- genome sequences of a collection of ...unique accessory genome that was attributed to pathogenic genomic islands, prophage-like elements, virulence factors, and a new set of gene clusters ...
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Comparison of long read sequencing technologies in the hybrid assembly of complex bacterial genomes
... (reference E.. Examples of genome structure uncertainty in hybrid assemblies in a) the chromosome and b) the accessory genome. b) A PacBio+Illumina hybrid assembly for isolate MGH785[r] ...
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Pathogenicity Locus, Core Genome, and Accessory Gene Contributions to Clostridium difficile Virulence
... Preliminary investigations into C. difficile virulence factors found no correlation with either sporulation rates or germination efficiency. It remains possible that these bac- terial phenotypes may be involved in C. ...
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Bacterial genospecies that are not ecologically coherent : population genomics of Rhizobium leguminosarum
... the accessory genome that sets of functions can come together in different combinations, and it is possible to envisage a bacterium that has the ability both to form root nodules and to cause a ...
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Evolutionary dynamics of methicillin resistant Staphylococcus aureus within a healthcare system
... core genome for the reference was manually defined by identifying and removing all MGE ...resulting accessory genome was assessed for each isolate by mapping their original assembly against the ...
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Identification of source and sink populations for the emergence and global spread of the East Asia clone of community associated MRSA
... Our core genome analysis supported the existence of two major clades, one originating in the USA and the other in East Asia. No evidence was obtained for the hy- pothesis, discussed previously in the literature ...
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A Complete Genome Screening Program of Clinical Methicillin Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbreak
... Mutations in the outbreak clone alter expression of virulence and persistence factors. Given the extended duration of the outbreak, we next sought to identify genomic features that could have contributed to its ...
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Patterns of Transcriptome Divergence in the Male Accessory Gland of Two Closely Related Species of Field Crickets
... (Andrés et al. 2006). Results of our transcriptome scan suggest that SNPs fixed between species constitute 10% of all iden- tified SNPs and that many contigs contain multiple fixed SNPs. These contigs are as differentiated ...
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The Sendai paramyxovirus accessory C proteins inhibit viral genome amplification in a promoter-specific fashion.
... Sendai virus (SeV) is a member of the Paramyxovirus genus of the Paramyxovirinae subfamily. This subfamily also includes the Morbillivirus (e.g., measles virus) and the Rubulavirus (e.g., mumps virus, simian virus 5, and ...
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Abstract: The human gut microbiome includes beneficial, commensal and pathogenic bacteria that
... ST131 genome composition, along with two plasmids with no known AMR genes as negative controls: pECSF1 (aka pSE15), and non- conjugative plasmid pJIE186-2 that has numerous virulence factor genes that are ...
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Application of Prize based on Sentence Length in Chunk based Automatic Evaluation of Machine Translation
... APAC score = (1 + R + γ γ 2 )RP 2 P (6) The P and R in Eqs. (1) and (2) re- spectively denote precision by candidate translation and recall by reference. These are calculated using the Ch score obtained using Eq. (3). ...
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Role of acccessory right inferior hepatic veins in evaluation of liver transplantation
... In a study by Radtke A et al. [11], 51% of the donors had donors had inferior hepatic veins (IHV) with detectable venous drainage territories? The results of this study were similar to what we observed in our potential ...
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Characterization of a Highly Replicative Intergroup M/O Human Immunodeficiency Virus Type 1 Recombinant Isolated from a Cameroonian Patient
... cloning was performed. Only limited amounts of primary PBMCs were available for the three sequential samples ob- tained from this patient; half of them were used for bulk virus isolation, and DNA was purified from the ...
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SPEECH CONTROLLED HOME AUTOMATION USING ARDUINO PLATFORM
... Open Accessory [13] provision permits peripheral USB hardware (an Android USB accessory) to interrelate with an Android-powered device in a superior accessory ...in accessory mode, the ...
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