Determining changes to the amino acid sequence
SSE: a nucleotide and amino acid sequence analysis platform
... The program uses simple ASCII coding for storage of sequence and annotation data in its native format with 4 bit coding for the four bases and each ambiguity code. Alignment and file size is restricted to ...
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Amino acid sequence correlation in optimally designed proteins
... In the figure above one can see a strong presence of PHI amino acids on the surface of the protein. On the other hand, only one internal monomer is found to be hydrophobic on all three designs. The cause for this ...
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Understanding how amino acid sequence determines a protein
... wild-type sequence background, however, the identity of residue 11 played a significant role in determining the relative proportions of the competing wild-type and switch protein ...Arc sequence ...
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The Complete Amino Acid Sequence of the Ca2+-dependent Modulator
... (see miniprint supplement discussion of T-2 and T-6). There- fore, CNBr-1A was clearly adjacent to the COOH terminus of CNBr-4 discussed above, confuming the placement of peptide[r] ...
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Amino Acid Sequence of Whale Heart Cytochrome c*
... 2 is shown the amino acid sequence of bovine and porcine cytochromes c together with the corresponding peptides obtained from whale heart cytochrome c. No peptide[r] ...
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Amino Acid Changes in a Unique Sequence of Bacteriophage T7 DNA Polymerase Alter the Processivity of Nucleotide Polymerization
... the amino acid changes (20, ...the changes in the three lysine residues described here on binding to thioredoxin are due to more complex interactions between the two ...76-amino ...
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Isoelectric point prediction from the amino acid sequence of a protein
... Using the Charge alphabet, a comparison of the dipeptide frequencies between the Apl < 0.1 subset and the 0.3 < Apl < 0.7 subset is shown in Figure 17 as well as the Delta % val[r] ...
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Amino acid sequence of a conserved neutralizing epitope of murine coronaviruses.
... We identified the binding site of monoclonal antibody 19.2, which cross-neutralizes several mouse hepatitis virus (MHV) strains, inhibits fusion of MHV-infected cells, and protects again[r] ...
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Whole genome sequence analysis of serum amino acid levels
... exome sequence data and the regulatory motif and sliding window approaches highlight the utility of whole genome sequence ...loci–amino acid paired associa- tions exceeded our a priori defined ...
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Sequence entropy of folding and the absolute rate of amino acid substitutions
... of changes in ...modelling amino acid substitution rates employing the formalisms of statistical ...in amino acid preferences due to epistatic interactions representing an essential ...
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Isoelectric point prediction from the amino acid sequence of a protein
... aacounts.pl Counts the number of each amino acid (normal alphabet) in a sequence from a FASTA file and determines the frequency of each. Output is to FASTAfilename.aacounts[r] ...
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Restriction of Amino Acid Change in Influenza A Virus H3HA: Comparison of Amino Acid Changes Observed in Nature and In Vitro
... the amino acid sequences of HA protein among 15 serotypes revealed the existence of strongly conserved positions (16, ...one-point amino acid change in this region resulted in the loss of ...
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Nucleotide sequence of the tail sheath gene of bacteriophage T4 and amino acid sequence of its product.
... To confirm the deduced amino acid sequence of the tail sheath protein (gpl8) that is encoded by gene 18, gpl8 was extensively digested by trypsin or lysyl endopeptidase and subjected to [r] ...
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Protein sequence alignment with family specific amino acid similarity matrices
... identity, but using fold-specific matrices can only mar- ginally improve sequence alignment of structurally-simi- lar proteins from the “twilight zone”. An important question is how similarities between aligned ...
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Amino Acid Metabolic Origin as an Evolutionary Influence on Protein Sequence in Yeast
... the amino acid produced by a pathway of enzymes was selectively eliminated from the primary amino-acid sequences of the self-same ...each amino acid in a group of functionally ...
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Predicting Protein-Protein Interaction Sites From Amino Acid Sequence
... which amino acid residues are located in the interaction site? Many investigators have analyzed the characteristics of protein-protein interaction sites to gain insight into the molecular determinants of ...
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Prediction of RNA binding sites in proteins from amino acid sequence
... that although the specificity for interface residues in this example is high (95%), the accuracy is relatively low (80%) compared with the average over the complete data set (85%), largely due to failure of RNABindR to ...
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Complete amino acid sequence of bovine glia maturation factor 13
... ABSTRACT The protein glia maturation factor , isolated from bovine brain, has been sequenced by automated Edman degradation and tandem mass spectrometry of overlapped peptide fragments g[r] ...
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The Amino Acid Sequence of a Major Nonimmunoglobulin Component of Some Amyloid Fibrils
... complete amino acid sequence of a protein, acid soluble fraction, (ASF) which constitutes up to 50% of amyloid fibrils from a patient with familial Mediterranean fever has been ...Partial ...
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Enzymatic activity of poliovirus RNA polymerase mutants with single amino acid changes in the conserved YGDD amino acid motif.
... An antipeptide antibody directed against the wild-type core amino acid segment containing the YGDD region of the poliovirus polymerase reacted with the wild-type recombinant RNA polymera[r] ...
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