genome rearrangements
Partially local three-way alignments and the sequence signatures of mitochondrial genome rearrangements
... been introduced to reduce the actual running time for large scale alignments [29]. In our study, however, since we align only the three sequences for the small break- point region, using dynamic programming to yield an ...
11
Elevated Rate of Genome Rearrangements in Radiation-Resistant Bacteria
... of genome structure ...the genome-destabilizing effect of environmental DNA damage and may be expected to result in a more conserved gene order in radiation-resistant ...of genome ...
14
A BAC clone fingerprinting approach to the detection of human genome rearrangements
... To explore the utility of fingerprint-based rearrangement detection, we used computational simulations and fingerprinted a set of clones derived from the MCF7 breast tumor cell line for which ESP data were available ...
17
Genome Rearrangements of Completely Sequenced Strains of Yersinia pestis
... of genome rearrange- ment events exist between the genomes of two Yunnan strains despite being isolated from two foci only 50 kilometers ...the genome sequences of the Yunnan strains with six strains (CO92, ...
5
Generation of Genetically Stable Recombinant Rotaviruses Containing Novel Genome Rearrangements and Heterologous Sequences by Reverse Genetics
... RV genome consists of 11 segments of double-stranded RNA (dsRNA) and is encapsidated within an icosahedral virion formed by three concentric protein layers (3, ...11 genome segments, ex- cept at the extreme ...
10
Finding local genome rearrangements
... A Hi-C experiment is conducted on a population of cells, thereby providing a rough estimate of the number of cells in which a pair of genomic loci were found to be in close 3D proximity. Hi-C estimates of the number of ...
14
Mitochondrial genome rearrangements in the Scleractinia/Corallimorpharia complex: implications for coral phylogeny
... The mt genomes of the Robusta differ from both coralli- morpharians and all other corals in several characteristics. First, within the larger Scleractinia/Corallimorpharia clade, the Robusta have the most compact mt ...
10
Tel-1 transposon-like elements of Tetrahymena thermophila are associated with micronuclear genome rearrangements.
... tion fragment length polymorphisms detected by a DRE-1 probe are associated with movement of these elements in Dictyostelium discoideum (MARSCHALEK et al. The variation [r] ...
11
Heterogeneity of genome rearrangements in rotaviruses isolated from a chronically infected immunodeficient child.
... 41 described the genomes of rotaviruses obtained from chronically infected, immunodeficient children; in these viruses normal RNA segments were missing from the profile, and various band[r] ...
8
Genome Rearrangements Caused by Depletion of Essential DNA Replication Proteins in Saccharomyces cerevisiae
... Class 3-3 illegitimate diploids had both an amplification of sequences proximal to the Ty2 retrotransposon, YCLWTy2- 1, and a deletion of right arm sequences distal to FS2 or d elements YCRC d 6 or YCRC d 7 of chromosome ...
19
Genome Rearrangements by Nonlinear Transposons in Maize
... large-scale genome reorganiza- tion by virtue of their ability to induce chromosomal rearrangements such as deletions, duplications, inversions, and reciprocal ...chromosome rearrangements at high ...
8
CRISPR/Cas9 mediated genome editing induces exon skipping by alternative splicing or exon deletion
... revealed genome rearrangements in three of these clones: large deletions (>500 bp) and smaller deletions (~100 bp) in clones 4 and 15, and large insertions in clones 13 and 15 (Additional file 1: Figure ...
8
A new PacBio genome sequence of an Australian Pyrenophora tritici repentis race 1 isolate
... the genome assembly of V1 (285X coverage), with median and maximum read lengths of 8959 bp and 72,292 bp ...V1 genome was assembled into 33 contiguous sequences with a of total length ...Whole genome ...
5
Corallimorpharian transcriptomes and their use to understand phylogeny and symbiosis in the Hexacorallia
... GBE Mitochondrial Genome Rearrangements in the Scleractinia/ Corallimorpharia Complex: Implications for Coral Phylogeny Mei-Fang Lin1,2,3,y , Marcelo Visentini Kitahara4,y , Haiwei Luo5,[r] ...
244
Coronaviruses Maintain Viability despite Dramatic Rearrangements of the Strictly Conserved Genome Organization
... gross genome rearrangements raises the question of why the coronavirus gene order is so strictly con- ...single genome undergo multiple nonhomolo- gous crossover events, the combined probability of ...
12
Lia1p, a Novel Protein Required during Nuclear Differentiation for Genome-Wide DNA Rearrangements in Tetrahymena thermophila
... Extensive genome-wide rearrangements occur during somatic macronuclear development in Tetrahymena ...developmental genome rearrangements were identified based on their proteins’ localization ...
10
The Reflected-Shifted-Truncated-Gamma Distribution for Negatively Skewed Survival Data with Application to Pediatric Nephrotic Syndrome
... Caulobacter genome rearrangements comes from the three genes for glutamyl-tRNA(Gln) amidotransferase, which comprise a single gatCAB operon in ...NA1000 genome (figure ...Caulobacter genome ...
68
Evaluating genome dynamics: the constraints on rearrangements within bacterial genomes
... which rearrangements occur most frequently, recombination between short repeats and the mobility of IS elements should increase the variety of ...rearrange genome organization as fast as genomes diverge by ...
8
Remarkable similarities of chromosomal rearrangements between primary human breast cancers and matched distant metastases as revealed by whole-genome sequencing
... Chromosomal rearrangements can be driver events in tumorigenesis, for example in a number of hematological malignancies and sarcomas ...However, rearrangements have not been thoroughly studied in breast ...
16
Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome
... Ethanol production and consumption. Thomson et al. [9] identified a group of recently-duplicated genes in S. cerevisiae that are implicated in that species’ ecological strategy of making, accumulating and consuming ...
14