Inverted repeat
Inverted repeat sequences in the genome of 'Rhodomicrobium vannielii'
... the inverted repeat DNA as Si nuclease can cleave even at the smallest hairpin loops (Li 1ley It Markham, 1983) leaving duplex DNA molecules which should not renature spontaneously upon denaturation and ...
231
Formation of Large Palindromic DNA by Homologous Recombination of Short Inverted Repeat Sequences in Saccharomyces cerevisiae
... bp tract of telomeric DNA sequence. ARS1 is a yeast origin of replication. CEN4 is a yeast centro- mere. The non-yeast DNA of these plasmids is derived from pBR322. The size of p42IRURA is ⵑ6.5 kbp. The plasmid p42IRLEU ...
11
A bacterial negative transcription regulator binding on an inverted repeat in the promoter for epothilone biosynthesis
... or inverted repeats of a 4–5 base pair sequence for the binding ...4-bp inverted repeat sequence ...the inverted repeat was the best Esi-binding ...the inverted GGGA of the ...
12
MITEAba12, a Novel Mobile Miniature Inverted-Repeat Transposable Element Identified in Acinetobacter baumannii ATCC 17978 and Its Prevalence across the Moraxellaceae Family
... Small mobile elements can be further delineated based on their movement auton- omy. A limited range of nonautonomous elements exist in bacteria, such as repetitive extragenic palindromic sequences, Tn3-derived ...
17
An Internal Rearrangement in an Arabidopsis Inverted Repeat Locus Impairs DNA Methylation Triggered by the Locus
... PAI–PAI4 inverted the mutant locus is not able to produce a strong enough repeat itself is not significantly affected (Melquist and signal for de novo methylation of an unmethylated PAI2 Bender 2003; Figure ...
12
MiteFinderII: a novel tool to identify miniature inverted-repeat transposable elements hidden in eukaryotic genomes
... adjacent inverted repeats should be merged. For perfect inverted repeats, we merge them by retaining one of them and altering the posi- tion ...all inverted repeats can match perfectly, and the ...
9
Transition from a heterozygous to a homozygous state of a pair of loci in the inverted repeat sequences of the L component of the herpes simplex virus type 1 genome.
... 4 Transition from a Heterozygous to a Homozygous State of a Pair of Loci in the Inverted Repeat Sequences of the L Component of the Herpes Simplex Virus Type 1 Genome KENICHI UMENE Depar[r] ...
6
Doxycycline induced expression of sense and inverted repeat constructs modulates phosphogluconate mutase (Pgm) gene expression in adult Drosophila melanogaster
... Pgm inverted-repeat sequences were used as probes and should hybridize to both transgenes and the endogenous Pgm ...the inverted-repeat con- struct had two effects detected by northern ...the ...
10
Identification and Characterisation of five novel Miniature Inverted-repeat Transposable Elements (MITEs) in amphioxus (Branchiostoma floridae)
... Characterisation of LanceleTn-3a and LanceleTn-3b LanceleTn-3a was initially characterised from 65 BLASTn matches in the stand-alone database to a region of the third intron of an NK-like gene AmphiLcx [22, 28]. ...
7
Unexpected invasion of miniature inverted-repeat transposable elements in viral genomes
... miniature inverted-repeat transposable elements (MITEs) in the 5170 viral genomes for which sequences are currently ...miniature inverted-repeat transposable elements (MITEs) were found and ...
12
Intrachromosomal Recombination in Saccharomyces cerevisiae : Reciprocal Exchange in an Inverted Repeat and Associated Gene Conversion
... rocal exchanges in the IS903 sequences occur in as- sociation with gene conversion or whether this r e c i p rocal recombination might be mediated by a separate pathway, w[r] ...
11
Factors Affecting Inverted Repeat Stimulation of Recombination and Deletion in Saccharomyces cerevisiae
... Figure 1.—Replication model for IR-generated genomic rearrangements (based on Gordenin et al. 1993). Presented is a strand of the LYS2 gene with an IR-insert undergoing replication. During replication of the IR sequence ...
18
Two Classes of Tn10 Transposase Mutants That Suppress Mutations in the Tn10 Terminal Inverted Repeat
... Isolation of transposase mutations that suppress mu- tations in the transposon end: Mutations of TnlU trans- posase were identified that increase the transposition freque[r] ...
10
Instability of a plasmid-borne inverted repeat in Saccharomyces cerevisiae.
... 1943; LEA and COULSON 1949), as described in MA- T o determine whether strains that formed blue colonies on X-gal plates containing plasmids with an alteration in [r] ...
6
International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories
... MITE: miniature inverted-repeat transposable element; NAHR: non-allelic homologous recombination; NER: nucleotide excision repair; NGS: next- generation sequencing; OPI: overproduction i[r] ...
11
A 160-bp Palindrome Is a Rad50·Rad32-Dependent Mitotic Recombination Hotspot in Schizosaccharomyces pombe
... (an inverted repeat of 80 bp) conferred a mitotic recombination hotspot relative to a control nonpalindromic sequence when inserted into the ade6 gene of Schizosaccharo- myces ...
8
DNA of Epstein-Barr virus. V. Direct repeats of the ends of Epstein-Barr virus DNA.
... Thus, the findings that there is no inverted repeat within 10 min of lambda exonuclease digestion, the size 10 x 106 daltons of the terminus of the long of most EBV DNA molecules was bet[r] ...
11
Diverse Sequences within Tlr Elements Target Programmed DNA Elimination in Tetrahymena thermophila
... targeted insertion into regions of the germ line genome that are predestined for elimination. As discussed above, at least 48 bp of flanking DNA is normally deleted from the developing macronucleus along with the Tlr1 ...
12
A Comparative Testing of Cucumber mosaic virus (CMV) Based Constructs to Generate Virus Resistant Plants
... This host dependence became clearly evident in our study when using the single gene constructs ΔCP, Δ2a2b and Δ2aΔ2b and inverted repeat construct (2bIR). Im- mune plants were only obtained when N. ...
12
A Mutation in the Flanking 5′-TA-3′ Dinucleotide Prevents Excision of an Internal Eliminated Sequence From the Paramecium tetraurelia Genome
... terminal inverted-repeat consensus, the functional relationship between this consensus and the conserved sequences at the termini of mariner/Tc1 transposons remains ...
8