Microsatellite Genotyping
Multilocus Microsatellite Genotyping Array for Investigation of Genetic Epidemiology of Pneumocystis jirovecii
... 1 microsatellite linked to dhps, a gene in which mutations are thought to confer reduced drug susceptibility to sulfa ...tilocus microsatellite genotyping method and use it to investigate the global ...
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Microsatellite Genotyping Clarified Conspicuous Accumulation of Candida parapsilosis at a Cardiothoracic Surgery Intensive Care Unit
... and microsatellite genotyping—we investigated the genetic relationship of 99 ...contrast, microsatellite genotyping showed a total of 56 different ...single microsatellite marker were ...
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Noninvasive and nondestructive sampling for avian microsatellite genotyping: a case study on the vulnerable Chinese Egret (Egretta eulophotes)
... low genotyping error ...atellite genotyping performance of nondestructive sam- ples was more reliable than that of noninvasive ...that genotyping errors can arise from low amounts of DNA, PCR inhibi- ...
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Microsatellite genotyping and genome wide single nucleotide polymorphism based indices of Plasmodium falciparum diversity within clinical infections
... Plasmodium falciparum sample collection and preparation Patients between the ages of one and 9 years presenting with uncomplicated P. falciparum malaria, as confirmed by rapid diagnostic test (Paracheck, Orchid ...
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Microsatellite Genotyping of Candida parapsilosis Clinical Isolates
... a microsatellite method for the genotyping of ...polymorphic microsatellite markers with higher discriminatory power ...that microsatellite markers have high reproducibility and are potential ...
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Microsatellite genotyping of medieval cattle from central Italy suggests an old origin of Chianina and Romagnola cattle
... Microsatellite dataset from modern cattle breeds were obtained from the EU Resgen project. In order to compare the allele lengths of the ancient cattle with those of the modern cat- tle database, we have included ...
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Reliable microsatellite genotyping of the Eurasian badger (Meles meles) using faecal DNA
... We tested the assumptions of the MLR method for our data set on a post hoc basis by checking for the presence of genotyping errors in all the amplification reactions that gave rise to a consensus heterozygous ...
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Assessment of an automated capillary system for Plasmodium vivax microsatellite genotyping
... Genomic DNA was isolated from whole blood using the QIAamp DNA Blood Kit (QIAGEN, Valencia, CA, USA). Samples were genotyped using a set of 15 previously reported microsatellite markers [37, 38]. Five micros- ...
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Microsatellite genotyping of Plasmodium vivax infections and their relapses in pregnant and non pregnant patients on the Thai Myanmar border
... It is clear from the analyses above that the P. vivax popu- lations in this hypoendemic region on the Thai-Myanmar border exhibited high genetic diversity, with about half of the isolates harbouring polyclonal ...
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Molecular analysis of ovarian mucinous carcinoma reveals different cell of origins
... Detailed microsatellite genotyping results at 9 tested loci are shown in Table 3. In the cohort of 8 mucinous tumors associated with teratoma there were only 6 in which teratomatous tissue was available for ...
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Development and validation of a novel single nucleotide polymorphism (SNP) panel for genetic analysis of Blastomyces spp and association analysis
... SNP genotyping is easily suited to high-throughput testing which is more cost-effective than microsatellite typing and/or Sanger ...whether microsatellite genotyping and SNP genotyping ...
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<p>Microsatellite Instability-Related <em>ACVR2A</em> Mutations Partially Account for Decreased Lymph Node Metastasis in MSI-H Gastric Cancers</p>
... Materials and Methods: The association between clinicopathologic characteristics and MSI status or ACVR2A mutational status was analysed based on a GC dataset from The Cancer Genome Atlas (TCGA). The association of ...
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Mismatch repair deficiency/microsatellite instability-high as a predictor for anti-PD-1/PD-L1 immunotherapy efficacy
... subsequent microsatellite instability-high lead to the accumulation of mutation loads in cancer-related genes and the generation of neoantigens, which stimulate the anti-tumor immune response of the ...or ...
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Microsatellite Instability in Yeast: Dependence on the Length of the Microsatellite
... To determine whether the effects of tract length o n stability and the types of alterations in wild-type strains reflected lengthdependent changes in the properties of[r] ...
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Comparative Genotyping of Candida albicans Bloodstream and Nonbloodstream Isolates at a Polymorphic Microsatellite Locus
... well-characterized microsatellite marker of ...CEF3 microsatellite locus analyzed here was shown to be stable upon repeated subculturing in vitro ...
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Molecular Genotyping of Candida parapsilosis Group I Clinical Isolates by Analysis of Polymorphic Microsatellite Markers
... This is the first report to describe the utility of microsatellite analysis for the molecular typing of isolates of a microorganism with an aneuploid genome. In organisms with a haploid ge- nome, a single PCR ...
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A method for genotyping elite breeding stocks of leaf chicory (Cichorium intybus L ) by assaying mapped microsatellite marker loci
... for genotyping elite breed- ing stocks—inbred lines—using microsatellites, or SSR (simple sequence repeat) ...markers, microsatellite-based markers require a much less preliminary genomic information and ...
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Performance of 6 HCV genotyping 9G test for HCV genotyping in clinical samples
... The k coefficient was used to assess consistency between 6 HCV Genotyping 9G test and LiPA 2.0 assay. The k values between 0.61 and 0.80 indicate good agreement between the two tests. The sensitivity, specificity, ...
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Genotyping of Toxoplasma gondii Isolates with 15 Microsatellite Markers in a Single Multiplex PCR Assay
... The genotyping results of the 15-MS multiplex assay showed that the 8 typing markers (TUB2, W35, TgM-A, B18, B17, M33, ...1. Microsatellite markers and PCR primers used for the multiplex PCR ...
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New Polymorphic Microsatellite Markers Able To Distinguish among Candida parapsilosis Sensu Stricto Isolates
... new microsatellite loci able to distinguish among ...the microsatellite repeats were designed and tested with 20 independent ...by microsatellite analysis and those obtained by randomly amplified ...
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