Palindromic sequence
Validation of use of whole cell repetitive extragenic palindromic sequence based PCR (REP PCR) for typing strains belonging to the Acinetobacter calcoaceticus Acinetobacter baumannii complex and application of the method to the investigation of a hospital outbreak
... Acinetobacter spp. are being reported with increasing frequency as causes of nosocomial infection. In order to identify reservoirs of infection as quickly as possible, a rapid typing method that can differentiate ...
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Clonal Relationship and Differentiation among Mycobacterium abscessus Isolates as Determined Using the Semiautomated Repetitive Extragenic Palindromic Sequence PCR Based DiversiLab System
... Mycobacterium abscessus is a rapidly growing mycobacterium that causes respiratory tract infections in predisposed patients, such as those with cystic fibrosis and nosocomial skin and soft tissue infections. In order to ...
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Palindromic Sequence Plays a Critical Role in Human Foamy Virus Dimerization
... The palindromic sequence (positions 396 to 405) within SII was shown to be important, since dimer formation was abol- ished when it was changed to a nonpalindromic sequence ...(SIIM8). ...
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A novel T-cell protein which recognizes a palindromic sequence in the negative regulatory element of the human immunodeficiency virus long terminal repeat.
... An oligonucleotide related to the site B region, but with multiple sequence changes, has been reported to bind the cellular transcription factor AP1 4, but an oligonucleotide containing [r] ...
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A 140-bp-Long Palindromic Sequence Induces Double-Strand Breaks During Meiosis in the Yeast Saccharomyces cerevisiae
... The his4240 mutant allele generates double-strand breaks during meiosis: A high rate of gene conversion events at the his4-140 allele in the msh2 background indicates [r] ...
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Comparison of a Repetitive Extragenic Palindromic Sequence Based PCR Method and Clinical and Microbiological Methods for Determining Strain Sources in Cases of Nosocomial Acinetobacter baumannii Bacteremia
... The usefulness of molecular techniques has already been demonstrated in epidemiological studies of infections due to A. baumannii. The DNA restriction fragment length polymor- phism analysis determined by pulsed-field ...
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An Extended Stem-Loop 1 Is Necessary for Human Immunodeficiency Virus Type 2 Replication and Affects Genomic RNA Encapsidation
... 10-nt palindromic sequence pal and the 6-nt palindromic sequence in the loop of the SL1 ...complementary sequence to SCR1. The nucleotides different from the wild-type sequence ...
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Typing of Clinical and Environmental Aeromonas sp Strains by Random Amplified Polymorphic DNA PCR, Repetitive Extragenic Palindromic PCR, and Enterobacterial Repetitive Intergenic Consensus Sequence PCR
... An excellent correlation was obtained between the results of RAPD and ERIC-PCR analyses. All strains with the same RAPD type were found to have the same ERIC type. Our observations demonstrate that RAPD and ERIC-PCR have ...
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Retrotransposon gag-like 1 (RTL1) and the molecular evolution of self-targeting imprinted microRNAs
... Consider an ancestral allele (A) of RTL1 that contains a single copy of a partially palindromic sequence. In AA homozygotes, the maternal allele is expressed as an anti- sense non-coding RNA and the ...
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Biochemical analysis of mutants with changes in the origin-binding domain of simian virus 40 tumor antigen.
... These activities include origin-specific and nonspecific DNA binding, melting of the imperfect palindromic sequence, untwisting of the AT-rich region, unwinding of origincontaining DNA, [r] ...
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Mechanisms of Human Immunodeficiency Virus Type 2 RNA Packaging: Efficient trans Packaging and Selection of RNA Copackaging Partners
... Human immunodeficiency virus type 2 (HIV-2) has been reported to have a distinct RNA packaging mechanism, referred to as cis packaging, in which Gag proteins package the RNA from which they were translated. We examined ...
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CRISPR Cpf1 proteins: structure, function and implications for genome editing
... interspaced palindromic repeats; Cas: CRISPR associated proteins; Cpf1: CRISPR from Prevotella and Francisella1; spCas9: Streptococcus pyogenes Cas9; PAM: protospacer adjacent motif; tracrRNA: Trans‑acting crRNA; ...
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Complete genome sequence of butenyl-spinosyn-producing Saccharopolyspora strain ASAGF58
... The predicted proteins were compared with Evolution- ary Genealogy of Genes: Non-supervised Orthologous Groups (EggNOG) database version 4.0 (http://eggnog. embl.de/version_4.0.beta/), and Clusters of Orthologous Groups ...
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Minute Virus of Mice Inhibits Transcription of the Cyclin B1 Gene during Infection
... Nascent cyclin B1 RNA production is reduced during infection. Cyclin B1 mRNA levels are known to vary across the cell cycle. In addition to being subjected to degradation as discussed above, in normally cycling cells ...
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Clustered Regularly Interspaced Short Palindromic Repeat Dependent, Biofilm Specific Death of Pseudomonas aeruginosa Mediated by Increased Expression of Phage Related Genes
... the sequence consisting of the DMS3-42 protospacer plus the PAM sequence is necessary and sufficient to block biofilm formation and inhibit swarming motility, we inserted the 32- nucleotide (nt) DMS3 ...
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Abundant and Diverse Clustered Regularly Interspaced Short Palindromic Repeat Spacers in Clostridium difficile Strains and Prophages Target Multiple Phage Types within This Pathogen
... as sequence differences in protospacers or ...nucleotide sequence is translated, a nonsynonymous change ...acid sequence of the endolysin differs by 6 residues between the two prophages, 2 of which ...
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An ATF/CREB site is the major regulatory element in the human herpesvirus 6 DNA polymerase promoter.
... Mutational analysis also revealed that the major upstream promoter regulatory element required for transcriptional activity in HHV-6-infected cells is a palindromic ATF/CREB transcriptio[r] ...
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Reconstruction of the Lineage Y Chromosome Haplotype of Napoléon the First
... The allelic values for A.C.W. are also the same as those of C.N. for 38 markers belonging to 15 palindromic STRs (listed on Table 2) other than YCAII1 and 2. The corresponding 40 allelic values for those markers ...
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Targeted Genome Engineering and Its Application in Trait Improvement of Crop Plants
... short palindromic repeats (CRISPR)/CRISPR-associated protein-9 nuclease (Cas9) (CRISPR/Cas9) system and its application in targeted genome ...seed sequence, which is an about 12-base sequence ...
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ON THE WORDS BY $k$ TO $k$ INSERTION OF A LETTER IN STURMIAN WORDS
... In this subsection, we show that the palindromes of a word obtained by k to k insertion of some letter in a Sturmian word are produced by some palindromes of the related Sturmian word. After, we determine the ...
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