Pilot study: Community analysis using PCR-DGGE
Microbial Community Analysis of the Anaerobic Digestion Process and the Early Stage of Composting of Pig Manure Using PCR-DGGE
... with using compost is that most of the compost produced nationally includes a lot of sawdust or hulls that are added as moisture regulators, and nutritional imbalance results in few fertilizer components in the ...
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TERRESTRIAL GREEN ALGAE DIVERSITY IN OIL PALM PLANTATION AND SECONDARY FOREST USING 18S-rDNA PCR-DGGE APPROACH
... to study soil algae diversities in tropical region, especially green algae in agricultural as well as disturbed and undisturbed ...algae analysis has been limited in the past by the available technology and ...
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PCR-DGGE analysis of fungal community in manufacturing process of a traditional Iranian cheese
... fungal DGGE analysis are summarized in Table ...by using D1 region of 26S rRNA gene, that amplified from isolated DNA and retro-transcribed RNA (cDNA) from milk, saline curd and ripened 180-days ...
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Elucidation of The Microbial Community in Activated Sludge using PCR-DGGE Analysis in Arid and Semi Arid Regions of Rajasthan
... 2: DGGE analysis for year 2009 where lanes 1 and 2 are samples from Bramhapuri location and sample 3 and 4 from Pratapnagar ...diverse community in both macrophytes with gammaproteobacteria and ...
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Evaluation of the effects of tropical tanniferous plants on rumen microbiota using qRT PCR and DGGE analysis
... sheep using the in vitro gas pro- duction technique (Hohenheim gas ...quantitative PCR was ...methanogenic community resulted in different band patterns: CYN presented some strong bands, which became ...
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PCR-DGGE analysis: Unravelling complex mixtures of badnavirus sequences present in yam germplasm
... combining PCR and DGGE methods for rapid and efficient determination and unravelling of complex mixtures of potentially episomal and endogenous badnavirus sequences has been developed (Figure ...specific ...
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Characterization of the Dominant Bacterial Communities Associated with Terrestrial Isopod Species Based on 16S rDNA Analysis by PCR DGGE
... bacterial community that they ...bacterial community associated with 11 specimens of terrestrial isopods belonging to six species using a Culture independent approach ...
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Comparison of DNA extraction kits for PCR-DGGE analysis of human intestinal microbial communities from fecal specimens
... the DGGE gel that were not sufficiently resolved to describe ...that PCR amplicons from the same set of samples be separated using DGGE gels of multiple gradients in order to better ...
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Using Cluster Analysis of Cytokines to Identify Patterns of Inflammation in Hospitalized Patients with Community-acquired Pneumonia: A Pilot Study
... This pilot study suggests that it may be possible to identify distinct cytokine patterns in plasma and sputum in hospitalized patients with CAP at the time of hospital ...across analysis of sputum ...
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A DGGE-cloning method to characterize arbuscular mycorrhizal community structure in soil
... AMF community structure in soil is challenging. In this study, nested polymerase chain reaction (PCR) and denaturing gradient gel electrophoresis (DGGE) were combined with cloning of fungal ...
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Polymerase Chain Reaction Denaturing Gradient Gel Electrophoresis (PCR DGGE) Profile of Bacterial Community from Agricultural Soils in Bauchi, North East Nigeria
... bacterial community was investigated in three Agricultural soils, designated as Loamy sand (A), Peaty coarse (B) and Loamy coarse sand (C) in North-East, ...DNA using the fast DNA Spin Kit extraction ...
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Phytoplankton diversity in the East China Sea and Yellow Sea measured by PCR-DGGE and its relationships with environmental factors
... phytoplankton community composition and environmental variables in the East China Sea (ECS) and Yellow Sea (YS) were investigated using geochemical and molecular microbiology ...characterized using ...
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DNA Fingerprinting of Lactobacillus crispatus Strain CTV 05 by Repetitive Element Sequence Based PCR Analysis in a Pilot Study of Vaginal Colonization
... this study, we assessed whether DNA fingerprinting by repetitive element sequence-based PCR (rep-PCR) can be used to distinguish the capsule strain of ...by using whole- chromosome probe DNA ...
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A pilot study in using argumentation frameworks for online debates
... This pilot study may also help in linking the two research areas of Argument Mining (ArgMin) and of Computational Argumentation ...graphical analysis in ...CompArg community for determining ...
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Applicability of PCR DGGE and 16S rDNA Sequencing for Microbiological Analysis of Otitis Media with Effusion
... in DGGE corresponds semi-quantitatively with the abundance of the particular microorganism in the ...The PCR-DGGE assay for detection of bacteria in MEE has not been used in previous ...studies. ...
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PCR DGGE analysis of earthworm gut bacteria diversity in stress of Escherichia coli O157:H7
... ABSTRACT In order to test if the intestinal bacteria play an im- portant role in antibacterial ability of earthworm, we chose Escherichia coli O157:H7, an anthropozoonosis pathogen, as a biological stressor and studied ...
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Pcr dgge based diversity analysis of bacteria and archaea from mud volcanoes on Andaman Islands, India
... INTRODUCTION Mud volcanoes are the channels for releasing the pressurised mud, gases and water from beneath the surface of earth. Mud volcanoes are both submarine and subaerial in nature and are found all around the ...
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Bacterial Colonization of the Equine Gut; Comparison of Mare and Foal Pairs by PCR DGGE
... the PCR-DGGE profiles were compared with Dice’s algorithm, all mare-foal pairwise similarities on d 14 and later were as great as the pairwise similarities between ...microbial community is present ...
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Rhizosphere bacterial communities of potato cultivars evaluated through PCR-DGGE profiles
... de PCR-DGGE das comunidades bacterianas associadas à rizosfera de cultivares de batata, para obter informações para futuros estudos de avaliação de risco ambiental de plantas de batatas geneticamente ...por ...
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PCR DGGE assessment of the bacterial diversity of breast milk in women with lactational infectious mastitis
... species for which no specific DGGE band could be assigned. In addition, some of the bands present in the DGGE gels corresponded to bacterial species that could not be iso- lated. Among them, there were some ...
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