population genomics
Population Genomics of Daphnia pulex
... single population, the population genomics of the microcrustacean Daphnia pulex are described and compared to current knowledge for the only other well-studied invertebrate, Drosophila ...effective ...
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Medaka: a promising model animal for comparative population genomics
... The medaka (Oryzias latipes) is a notable candidate for such a model animal. This small freshwater fish is found in East Asia with closely related congeneric species broadly distributed throughout Southeast Asia, and it ...
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Genome-wide identification of directed gene networks using large-scale population genomics data
... observational population genomics data that are both directed (using local genetic instruments as causal anchors, akin to Mendelian Randomization) and speci fi c (by controlling for linkage disequilibrium ...
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Minimum sample sizes for population genomics: an empirical study from an Amazonian plant species
... on population genomics, addressing sampling issues based on simulations may not always hold true in nat- ure where model assumptions are often violated (Koskinen et ...
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Detecting polygenic selection in marine populations by combining population genomics and quantitative genetics approaches
... The population genomic approach to local adaptation takes a dif- ferent ...tion, population genomics methods do not attempt to relate candidate loci to particular ...
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Population genomics and structure of the critically endangered Mariana Crow (Corvus kubaryi)
... and population decline on Rota, it is of critical importance to assess the genetic variation among individuals to assist ongoing recovery ...a population genomics analysis comparing the Guam and Rota ...
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From correlation to causation: Data-driven exploration of transcriptional regulation using population genomics
... Indeed, using different methodologies, each with their own merits and faults, should be employed to provide a definitive answer to a research question. Hence, we have attempted to experimentally validate the results in ...
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The population genomics of begomoviruses: global scale population structure and gene flow
... Despite conflicting with the current classification of swepoviruses as a distinct lineage, it is perhaps unsur- prising that our analysis has indicated that swepoviruses and the legumoviruses are sister, probably ...
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Mycobacterium ulcerans Population Genomics To Inform on the Spread of Buruli Ulcer across Central Africa
... The population of the territory (estimated at around 154,000 inhabitants) leads a sedentary lifestyle and lives mostly from subsis- tence agriculture and (petty) ...
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Population genomics reveals that an anthropophilic population of Aedes aegypti mosquitoes in West Africa recently gave rise to American and Asian populations of this major disease vector
... Despite finding no evidence using the three-population test for the Senegal Urban population being a mixture of African and non-African populations, we do find evidence for admixture among our five ...
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Biology, Epidemiology and Population Genomics of Pseudoperonospora cubensis, the Causal Agent of Cucurbit Downy Mildew.
... 2015) reported that P. cubensis was capable of infecting only on Cucumis species and L. siceraria. Since we observed that A1 isolates were capable of causing infection only on Cucumis species and L. siceraria, it is ...
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Can population genomics guide future therapeutic gene transfer strategies for Parkinson’s disease?
... PD population has been estimated to include 5 million peo- ple worldwide [3], and is expected to expand to nearly 10 million by the year 2030 ...the population in de- veloped countries ...
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Triallelic Population Genomics for Inferring Correlated Fitness Effects of Same Site Nonsynonymous Mutations
... There were 10,471 mutually nonsynonymous triallelic codon polymorphisms in the 197 sampled genomes of the Zambian fruit fly data, which yielded a tight confidence in- terval for the selection correlation coefficient (Table ...
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The population genomics of archaeological transition in west Iberia: Investigation of ancient substructure using imputation and haplotype based methods
... Our genomic data from 14 ancient individuals from 8 Portuguese archaeological contexts ranging from the Middle Neolithic to Middle Bronze Age throws light on how the two funda- mental transitions in European prehistory ...
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Population genomics informs conservation and management of the Galapagos shark (Carcharhinus galapagensis) at local, regional and oceanic scales
... effective population size, and has increased the statistical power and resolution of population adaptation and phylogenetic structure analyses (Benestan et ...the population and species level (Vignal ...
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Comparative Population Genomics Analysis of the Mammalian Fungal Pathogen Pneumocystis
... Genomic variation and population structure. We sequenced the whole genome of 52 strains of three distinct species (P. jirovecii, P. carinii, and P. murina) collected from North America and Denmark from 1983 to ...
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Evolutionary and population genomics of the cavity causing bacteria Streptococcus mutans
... Do T , et al. Generation of diversity in Streptococcus mutans genes demonstrated by MLST Translated from eng PLoS One e in eng Coventry A , et al. Deep resequencing reveals excess rare recent variants consistent with ...
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Bacterial genospecies that are not ecologically coherent : population genomics of Rhizobium leguminosarum
... leguminosarum population, this level of genetic divergence (less than ...the population is so high that our sample of 72 isolates does not include any clear example of the same ecotype being sampled ...
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Population Genomics of Reduced Vancomycin Susceptibility in Staphylococcus aureus
... 1 year, and at each successive time point, the patient’s isolates showed increased vancomycin MIC levels. The population genomic approach employed here does not assume that the patient’s S. aureus isolates are ...
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Comparative population genomics reveals the domestication history of the peach, Prunus persica, and human influences on perennial fruit crops
... functional genomics because it is a diploid species (2n = 16), and has a small genome (approximately 220 Mb, about twice that of ...for population ana- lyses of ...peach population evolution and ...
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