Proteomics analysis
Proteomics analysis of colon cancer progression
... for proteomics analysis. To support proteomics research of stage-specific (non-metastatic/node-negative and metastatic/node-positive) and site-specific (colon in our case) pooling of samples for ...
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Proteomics analysis of differentially expressed proteins in chicken trachea and kidney after infection with the highly virulent and attenuated coronavirus infectious bronchitis virus in vivo
... use proteomics are promising because they can circumvent some of the issues associated with transcriptomics approaches ...comparative proteomics analysis has emerged as a valuable tool for the ...
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Comparative proteomics analysis of Spodoptera frugiperda cells during Autographa californica multiple nucleopolyhedrovirus infection
... Previous studies have accumulated rich knowledge about baculovirus gene expression and function during infec- tion. These contain almost the entire whole process of in- fection, including virus entry, movement into the ...
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Synovial tissue quantitative proteomics analysis reveals paeoniflorin decreases LIFR and ASPN proteins in experimental rheumatoid arthritis
... spectrometric analysis of the iTRAQ-labeled samples was performed by Q Exactive liquid chromatography-tandem mass spectrometry (LC-MS/MS; Thermo Scientific ...
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Proteomics analysis of faecal proteins in the tick Haemaphysalis flava
... Raw data generated by MS/MS was imported into Bruker compass Data Analysis 4.0 (http://bruker-comp ass-dataanalysis.updatestar.com/). Then, unique peptides were searched in the peptide library conceptually trans- ...
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The interactome and proteomic responses of ALKBH7 in cell lines by in-depth proteomics analysis
... enrichment analysis of proteins enriched in mitochondrion associated with ALKBH7 With anti-ALKBH7 antibody, we tried to study the inter- actome of endogenous ALKBH7 through ...of proteomics assays, 69 pro- ...
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Proteomics Analysis Reveals Previously Uncharacterized Virulence Factors in Vibrio proteolyticus
... The V. proteolyticus secretome. To identify the secreted pro- teins that mediate the cytotoxic effects of V. proteolyticus, we an- alyzed the V. proteolyticus secretome. To do so, we grew V. proteo- lyticus in liquid ...
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A novel workflow combining plaque imaging, plaque and plasma proteomics identifies biomarkers of human coronary atherosclerotic plaque disruption
... Results: We compared two pairs of coronary plaque debris, captured by a FilterWire Device, and their corresponding control samples and found matrix metalloproteinase 9 (MMP9) to be significantly enriched in plaque. ...
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Glyphosate does not substitute for glycine in proteins of actively dividing mammalian cells
... Objectives: Glyphosate (N-phosphonomethyl glycine) and its commercial herbicide formulations have been shown to exert toxicity via various mechanisms. It has been asserted that glyphosate substitutes for glycine in ...
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Advances in proteomics for production strain analysis
... initial proteomics analysis of butanol stress in Synechocystis highlighted multiple simultaneous pathways activating in response to the stress [28], was followed up by a transcriptome study ...Joint ...
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Proteomics based identification of haptoglobin as a favourable serum biomarker for predicting long term response to splenectomy in patients with primary immune thrombocytopenia
... splenectomy, four nonresponders and four healthy controls were subjected to two-dimensional gel electrophoresis (2-DE). Nine protein spots with at least a five-fold alteration in expression between responders and ...
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Plasma disturbance of phospholipid metabolism in major depressive disorder by integration of proteomics and metabolomics
... The labeled peptides were analyzed on a Q Exactive mass spec- trometer (Thermo Fisher Scientific) coupled with an EASY- nanoLC system. A nanoViper C18 trap column (100 µ m × 2 cm, 5 µ m particle size; Thermo Fisher ...
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Proteomics profiling of interactome dynamics by colocalisation analysis (COLA).
... 3 Analysis of interactome dynamics by ...iCOLA analysis of A375P ...(E) Analysis of the reproducibility of the overall localisation signatures between two biological replicate iCOLA ...
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Proteoform Analysis to Fulfill Unmet Clinical Needs and Reach Global Standardization of Protein Measurands in Clinical Chemistry Proteomics
... MS-based proteomics strategies that provide extensive lists of protein identities and quantities in clinical samples such as tissue or body ...proteome analysis [39-41]. The same holds true for the in-depth ...
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Altered gene and protein expression in liver of the obese spontaneously hypertensive/NDmcr-cp rat
... data analysis was carried out using Gene- Spring ...(GO) analysis was performed using GeneSpring (Agilent ...mics analysis, the differential in-gel analysis module of the DeCyder software (GE ...
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Review Article Mass Spectrometry-Based Proteomics and Peptidomics for Biomarker Discovery in Neurodegenerative Diseases
... Oftentimes bioinformatics tools beyond protein database search engines are needed to turn the enormous amount of data into useful information. For example, surface enhanced laser desorption ionization mass spectrometry ...
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BioAfrica's HIV 1 Proteomics Resource: Combining protein data with bioinformatics tools
... [15], PROSITE [16] or ProDom [17]; perform similarity searches using the BLAST program available at Genbank [18], conduct structural comparisons using the BioAfrica BLAST Structure program; determine amino acid compo- ...
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Proteomic analysis of human plasma in chronic rheumatic mitral stenosis reveals proteins involved in the complement and coagulation cascade
... years proteomics has emerged as a novel tech- nology that has been extensively applied to cardiovascular disease research with the aim to understand the disease ...proteomic analysis in various ...
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Unique and differential protein signatures within the mononuclear cells of HIV-1 and HCV mono-infected and co-infected patients
... HIV-1, HCV, and HIV-1/HCV co-infected PBMC proteome To facilitate quantitative detection and to maximize iden- tification of changes in the proteome induced by HIV-1, HCV, and HIV-1/HCV PBMCs, cell lysates were subjected ...
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Genomics and Proteomics of Mycobacteriophage Patience, an Accidental Tourist in the Mycobacterium Neighborhood
... Proteomic analysis using mass spectrometry provides evidence for expres- sion of at least 83 Patience proteins, two of which are from cryptic open reading frames (ORFs) embedded within annotated ...
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