Sequence alignment between AGME and closely related
KISSa: a strategy to build multiple sequence alignments from pairwise comparisons of very closely related sequences
... multiple sequence alignment algorithm such as MUSCLE, but rather as a tool to format sequences that have 1) minor differences in length and 2) very few indels into a quasi- ...active, alignment ...
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Faster and efficient algorithm for sequence alignment
... certain sequence features— such as insertions, deletions, repeats, or inverted repeats—from a dot-matrix ...very closely related sequences will appear as a single line along the matrix's main ...
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Sequence Heterogeneity of TT Virus and Closely Related Viruses
... genetically related than any other TTV ...equally related to both genotypes 2 and ...distances between these four groups were also shown to be greater than between TTV ...represent ...
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Efficient Discrimination Between Closely Related Languages
... discrimination between closely related languages deserves special ...character sequence features are not sufficient for distinguishing languages with a large lexical ...
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Distinguishing Between Two Closely Related Strains of Xylella fastidiosa
... randomly amplified polymorphic DNA-PCR, CHEF analysis, enterobacterial repetitive intergenic sequence-PCR, and restriction fragment length polymorphism [5]-[9]. With the use of DNA-DNA relatedness assays and the ...
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Detailed Alignment of Saccharum and Sorghum Chromosomes: Comparative Organization of Closely Related Diploid and Polyploid Genomes
... The complex polyploid genomes of three Saccharum species have been aligned with the compact diploid genome of Sorghum (2n 5 2x 5 20). A set of 428 DNA probes from different Poaceae (grasses) detected 2460 loci in F 1 ...
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Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillusspecies
... Conclusions: Despite the unmistakable organizational similarities between the B. licheniformis and B. subtilis genomes, there are notable differences in the numbers and locations of prophages, transposable ...
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Whole genome sequence analysis; an improved technology that identifies underlying genotypic differences between closely related Listeria monocytogenes strains
... fferences between closely re- lated pairs of ...differences between strains 198 and 2932 in terms of their external stress and antibiotic resistances, as well as showing a capacity for de- tecting ...
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Transposons played a major role in the diversification between the closely related almond and peach genomes: Results from the almond genome sequence
... E220 and fragments of 150 –300 bp were size-selected using AMPure XP beads (Beckmann Coulter, Brea CA, USA). The libraries were constructed using the Kapa Library Preparation kit (Roche Kapa Biociences, Pleasanton CA, ...
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Genomic Analysis of Closely Related Astroviruses
... evolution. Sequence diversity in astroviruses may also involve host selection pres- ...first alignment contained TAstV-2-like capsid sequences (accession numbers EU143843 to EU143851 and ...second ...
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Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales
... the sequence-based evidence for Endozoi- comonas as a core microbiome member of certain corals is compelling, most studies have used corals from only one geographic location and often meth- ods across studies are ...
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Discriminating Between Closely Related Languages on Twitter"
... All the languages, except Montenegrin, use the same phonemic inventory, and they are all based on the write- as-you-speak principle. Croatian is slightly different in this respect, because it does not transcribe foreign ...
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Mutual intelligibility between closely related languages in Europe
... of closely related languages within the Germanic, Slavic and Romance language groups in Europe in a large-scale web- based ...listeners between 18 and 33 years of ...another closely ...
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Identifying false friends between closely related languages
... of closely related ...overlap between the two languages, we focus on measuring the difference in meaning between iden- tically spelled words by using frequency and distributional ...
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DNA SEQUENCE COMPARISON AMONG CLOSELY RELATED DROSOPHILA SPECIES IN THE MULLERI COMPLEX
... We examined the extent of hybridization and the thermal stability of both single-copy and middle-repetitive DNA sequences from five Drosophila species in the muller[r] ...
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A Step Towards Sequence-to-Sequence Alignment
... Fig. 5 illustrates that temporal alignment is not limited to motion information alone. A light source was brightened and then dimmed down, resulting in observable illumination variations in the scene. The cameras ...
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Pairwise Sequence Alignment
... a) A continuous main diagonal shows perfect similarity for symbols with the same indices. b) Parallels to the main diagonal indicate repeated regions in the same reading direction on different parts of the sequences. In ...
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Language Related Issues for Machine Translation between Closely Related South Slavic Languages
... 4 Evaluation results on standard in-domain test sets Table 2 presents the automatic scores for standard test sets for all SMT systems together with the scores for translations 7 by the publicly available Google translate ...
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Language related issues for machine translation between closely related south Slavic languages
... translation between closely related languages is less challenging and exhibits a smaller number of translation errors than translation between distant languages, but there are still obsta- ...
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An enhanced RNA alignment benchmark for sequence alignment programs
... (fast) sequence alignment programs using new or optimized program ...of alignment programs to multiple "sequence" alignment programs because – at least for the computing resources ...
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