Sequence phylogenetic analysis and diversity indices
Microbial diversity analysis, sequence isolation and phylogenetic analysis of south indian gundaru river basin
... Trevors 1998b; Wall and Virginia 1999]. Here we perform the ecological flow of microbial species from one of the river water and soil surroundings in South India. Gundaru River flows in the southern part of Tamilnadu and ...
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Multilocus Sequence Typing and Phylogenetic Analysis of Propionibacterium acnes
... the phylogenetic tree. A detailed analysis of each of the 76 genes by tree construction revealed a mosaic pattern in the strains HL025PA1, SK187, and ...
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A sequence database for the identification of ectomycorrhizal basidiomycetes by phylogenetic analysis
... The first pattern can be seen in several parts of the tree. In the Boletales (Fig. 2a, all groups) the wood-decaying species of the Coniophoraceae (groups 3 and 4) and Paxillaceae (group 3) appear to be the close ...
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The phylogenetic diversity of metagenomes.
... Phylogenetic diversity makes sense of conflicting patterns of taxonomic diversity along depth gradients Our approach provides a phylogenetic framework that makes sense of the inconsistent ...
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Sequence and Phylogenetic Analysis of SSU rRNA Gene of Five Microsporidia
... Two phylogenetic trees based on SSU rRNA sequences had been constructed by using Neighbor-Joining of Phylip software and UPGMA of ...by analysis of phylogenetic relationship, length, G?C content, ...
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Sequence and Phylogenetic Analysis of Wild Type Rubella virus isolated in Iran
... Molecular phylogenetic analysis is useful tool for rubella virus surveillance and in order to reach to this goal, obtaining sequences from circulating virus is ...
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Target Sequence Capture of Nuclear-Encoded Genes for Phylogenetic Analysis in Ferns
... fern diversity with a slight emphasis on Dennstaedtiaceae, Lindsaeaceae, and some other early diverging Polypodiales, which were underrepresented in the earlier transcriptome- based work (Rothfels et ...BaseSpace ...
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Quantifying phylogenetic beta diversity: distinguishing between 'true' turnover of lineages and phylogenetic diversity gradients
... of phylogenetic turnover as they incorporate different aspects of differences in evolutionary history between communities that may be attributable to phylogenetic diversity ...beta diversity ...
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Prioritizing phylogenetic diversity captures functional diversity unreliably
... Our analysis suffers from a similar data ...their phylogenetic distribution is typical of those traits that are most desirable for the purpose of conservation and that our primary results are there- fore ...
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Role of Large Sequence Polymorphisms (LSPs) in Generating Genomic Diversity among Clinical Isolates of Mycobacterium tuberculosis and the Utility of LSPs in Phylogenetic Analysis
... a phylogenetic analysis of gene deletions found in ...cal” phylogenetic tree constructed with synonymous SNP ...present phylogenetic evidence that many of the gene regions contained within ...
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The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes
... the sequence alignment and comparison, the phy- logenetic analyses, the relative tests of evolution, and drafted the ...end sequence searches, BAC shotgun library construction and sequencing, ...
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Citrate Synthase Gene Sequence: a New Tool for Phylogenetic Analysis and Identification ofEhrlichia
... partial sequence of the HGE agent gltA was first determined by using degenerated primers F3 and R1b designed after the alignment of the conserved regions of gltA among Rickettsia prowazekii, Bartonella henselae, ...
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groESL Sequence Determination, Phylogenetic Analysis, and Species Differentiation for Viridans Group Streptococci
... groESL sequence-based species identification, the groES, spacer, and groEL sequences from clinical isolates were determined to identify intraspecies ...acid sequence similarities among reference strains of ...
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Sequence and phylogenetic analysis of highly pathogenic avian influenza H5N1 viruses isolated during 2006–2008 outbreaks in Pakistan reveals genetic diversity
... Results: Phylogenetic analysis revealed close clustering and highest sequence identity in all 8 genes to HPAI H5N1 isolates belonging to unified H5 clade ...their sequence homology and ...high ...
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Phylogenetic Diversity of Russula from Xiaozhongdian, Yunnan, China, Inferred from Internal Transcribed Spacer Sequence Data
... We thank the Kunming Institute of Botany, Chinese Academy of Sciences for providing facilities and the World Agroforestry Centre, East and Central Asia Office, for hosting us. We would also like to thank Humidtropics, a ...
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PHYLOGENETIC ANALYSIS
... PHYLIP is a command-line program and does not have a point-and-click inter- face, as programs like PAUP do. The documentation is well written and very com- prehensive, and the interface is straightforward. A program ...
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Gene-Based Sequence Diversity Analysis of Field Pea (Pisum)
... ABSTRACT Sequence diversity of 39 dispersed gene loci was analyzed in 48 diverse individuals representative of the genus ...in diversity parameters, suggesting widely differing levels of selection ...
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Analysis on Nutritious Balance in Recipes Based on Diversity Indices and Cluster Analysis of Food Ingredients
... Cluster analysis, also known as group analysis and point group analysis, is an ideal multivariate statistical technique for classification, mainly including partitioning clustering and hierarchical ...
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A comprehensive phylogenetic analysis of the Scleractinia (Cnidaria, Anthozoa) based on mitochondrial CO1 sequence data
... Our phylogenetic analyses imply that the most basal extant scleractinians are azooxanthellate solitary corals from deep-water, their divergence predating that of the robust and complex ...
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Phylogenetic Analysis of Salmonella, Shigella, and Escherichia coli Strains on the Basis of the gyrB Gene Sequence
... 2002 Phylogenetic analysis of about 200 strains of Salmonella, Shigella, and Escherichia coli was carried out using the nucleotide sequence of the gene for DNA gyrase B (gyrB), which was determined ...
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