Sequencing and comparative genome analysis
Sequencing and comparative genome analysis of streptococcus sanguinis and streptococcus gordonii / Zheng Wenning
... Streptococcus genome sequences, annotations and results generated were collected and stored in ...Streptococcus genome annotations, gene sequences information and genome data as well as to perform ...
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Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics
... the genome of the species Arcobacter butzleri has been analysed, and still little is known about their physiology and ...complete genome and analysis of the ...the comparative genome ...
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Genome sequencing, annotation and comparative genomic analysis of Shigella dysenteriae strain SD1D
... directions Genome analysis in ...whole genome is exploited to develop and design new anti-malarial drug targets ...pathway analysis showed that ...
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A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre and post chemotherapy
... genomic catastrophes and the accumulation of clonal diversity may play a role. Our paired cases support these prior observations (Nones et al. 2014). On average, we noted that approximately a quarter of the ge- nome had ...
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A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy
... or sequencing metrics, and we have demonstrated that the quality metrics were generally favorable and resulted in the inclusion of a greater proportion of late-stage tumors that would otherwise have been ...the ...
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'Lactobacillus fermentum' 3872 genome sequencing and analysis
... draft genome assemblies deposited in databanks, and for comparative genomic studies that assume good genome ...of sequencing two ends of a fragmented DNA of 400 bp in length, with a 20kb ...
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SPANDx: a genomics pipeline for comparative analysis of large haploid whole genome re sequencing datasets
... designed to efficiently and accurately decode these vast volumes of nucleic acid data. However, analysis has been unable to keep pace with the volume of data being gen- erated. Challenges to NGS data management ...
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SPANDx: a genomics pipeline for comparative analysis of large haploid whole genome re-sequencing datasets
... designed to efficiently and accurately decode these vast volumes of nucleic acid data. However, analysis has been unable to keep pace with the volume of data being gen- erated. Challenges to NGS data management ...
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Scalable and reproducible genome analysis in the age of next-generation genome sequencing
... A genome sequence for Polistes dominula, the best-studied member of the model genus Polistes, greatly enhances our power to study the genetics of social behavior via comparative genomic and transcriptomic ...
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Comparative whole genome re-sequencing analysis in upland New Rice for Africa: insights into the breeding history and respective genome compositions
... Integrated analysis with another four NU lines (1, 2, 8, and 9) showed that the ratios of the donor CG14 allelic sites in the NU lines ranged from ...indicated genome-level similarities and common genetic ...
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Comparative Analysis of Subtyping Methods against a Whole Genome Sequencing Standard for Salmonella enterica Serotype Enteritidis
... whole-genome sequencing as a benchmark for comparing molecular subtyping methods for Salmonella enterica serotype Enteritidis and survey the population structure of commonly encountered ...(VNTR) ...
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Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis.
... whole-genome sequencing as a benchmark for comparing molecular subtyping methods for Salmonella enterica serotype Enteritidis and survey the population structure of commonly encountered ...(VNTR) ...
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Comparative microbial genome analysis of lactobacilli
... with sequencing the right ...involving sequencing and its accompanying analysis takes time, expertise and ...for sequencing projects of their own, but with sufficient expertise and insight, ...
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Identification of Heterokaryon Incompatibility Genes in Aspergillus using Array Comparative Genome Hybridization and Whole Genome Sequencing.
... genetic, genome assembly and analysis tools, as well as metagenomic and large-scale phylogenetic ...specific analysis. Analysis pipelines or workflows for population genetic, metagenomic and ...
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First genome sequencing and comparative analyses of Corynebacterium pseudotuberculosis strains from Mexico
... analysis suggested that the genetic structure of Ovis is more influenced by animal transportation than host preference. An in silico analysis of protein families showed two important clusters that may ...
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Lessons learned from the initial sequencing of the pig genome: comparative analysis of an 8 Mb region of pig chromosome 17
... of genome sequenc- ing at increased levels of ...large-scale sequencing projects in the last two decades has been accom- panied by the formulation of mathematical models to quanti- tatively determine the ...
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Comparative analysis of the chicken IFITM locus by targeted genome sequencing reveals evolution of the locus and positive selection in IFITM1 and IFITM3
... To date, the study of IFITM genetic variation has only been undertaken on a few chicken samples of different ori- gins and no comprehensive breed analysis has been conducted. It is known that chickens within ...
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Complete Genome Sequence and Comparative Genomic Analysis of
... 15300 genome and comparative analysis among the complete genomes of Mycobacterium ...gene sequencing of Mycobacterium with 1,000-fold ...
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Sequencing and Comparative Analysis of a Conserved Syntenic Segment in the Solanaceae
... It is not known how representative the CSS is of the entire Solanaceae genomes, but it is worth noting that the gene density of the region is fairly typical for euchromatin. The CSS has one gene per 7 kb compared with ...
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Analysis of genetic systems using experimental evolution and whole-genome sequencing
... The comparative study of extant genomes has revolutionized biology, shedding light not only on evolution but also on physiology, genetics and ...in comparative genomic studies of organisms that have ...
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