Syntenic region
Comparative genomic sequence analysis of strawberry and other rosids reveals significant microsynteny
... the syntenic region of Populus, Medicago, and Arabidopsis (Figure ...terminal region [12], the two groups have been called TNL (TIR-NBS_LRR) and CNL (CC-NBS-TIR) ...
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Missed, not missing: Phylogenomic evidence for the existence of Avian FoxP3
... understand syntenic regions surrounding the putative foxp3 gene in the ground tit, the DNA region containing foxp3 together with its flanking genes was downloaded from the NCBI, as were the corresponding ...
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Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species
... more syntenic blocks (719 and 714) were identified in the Avena–Hordeum comparisons, they were smaller – consisting of ~ ...lower syntenic block size correlation (R 2 = ...the syntenic sequence on ...
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A genetic linkage map of sole (Solea solea): a tool for evolutionary and comparative analyses of exploited (flat) fishes
... conserved syntenic regions ...Most syntenic sequences were found with stickleback (23 syntenic regions, containing on average ...the syntenic regions was smaller for stickleback ...
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The Genome of Model Malaria Parasites, and Comparative Genomics
... Comparative genomics lends itself readily to the simultaneous annotation of syntenic regions in multiple species. Both gene models and accurate exon/intron boundaries can be difficult to predict in cases where ...
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The meso genomic era
... The human genome is unfinished and we still lack another complete vertebrate genome for comparison, but comparative genomics is already becoming popular. Jean Weissenbach (National Centre for Scientific Research (CNRS), ...
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A Deficiency in the Region Homologous to Human 17q21.33–q23.2 Causes Heart Defects in Mice
... genomic region associated with the human dele- tions spans 19 Mb (T homas et ...The syntenic region in the mouse genome is distributed between seven segments in the distal region of mouse ...
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Bayesian Inference of Shared Recombination Hotspots Between Humans and Chimpanzees
... identified syntenic regions of the genomes in humans and ...of syntenic regions were obtained on the basis of the two-way alignment of human and ...each region to ensure synteny. There are 653 such ...
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The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species
... the syntenic status of the genes in the three post-WGD species ...unambiguously syntenic context; 0 means that a gene is absent from a clearly syntenic region of the aligned post-WGD genome; ! ...
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Sequence Finishing and Gene Mapping for Candida albicans Chromosome 7 and Syntenic Analysis Against the Saccharomyces cerevisiae Genome
... this region is unknown, although genes located within the region are likely ...different region (Sanyal et ...longest syntenic region between the ge- this domain in the common ancestor ...
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Missed, Not Missing: Phylogenomic Evidence for the Existence of Avian FoxP3
... understand syntenic regions surrounding the putative foxp3 gene in the ground tit, the DNA region containing foxp3 together with its flanking genes was downloaded from the NCBI, as were the corresponding ...
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The opium poppy genome and morphinan production.
... genomic region containing the T6ODM gene family ...repetitive region the longest repeat sequence spans over 44kb, which is longer than most PacBio SMRT sequencing ...repetitive region. The dot plot ...
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Bovine b946; defensin gene family: Opportunities to improve animal health?
... The observed gene duplication within the bovine  -defensin cluster has created a repertoire of phylogenetically diverse functional genes, which is substantially larger than that de- scribed for humans and mice. Single ...
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Genetic Linkage Map and Comparative Genome Analysis for the Atlantic Killifish (Fundulus heteroclitus)
... Syntenic relationships were explored for the consensus linkage map against two other teleost species for which an annotated genome assembly is available: medaka (Oryzias latipes) [17] and zebrafish (Danio rerio) ...
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Integrating genetic maps in bambara groundnut [Vigna subterranea (L) Verdc ] and their syntenic relationships among closely related legumes
... score of 5.3 to LG2 50.6 cM (CI: 47.6 – 53.2 cM), explaining 33.4% of phenotypic variation observed in this cross (listed in Table 2 and Fig. 3a). The nearest flanking markers from the pre-selected common marker set are ...
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A Syntenic Cross Species Aneuploidy Genetic Screen Links RCAN1 Expression to β-Cell Mitochondrial Dysfunction in Type 2 Diabetes
... The relationship between DS and diabetes is both poorly studied and highly complex. While the incidence of T1D is increased in the DS population [30,31], few publications exist regarding the incidence of T2D. One such ...
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Phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences
... Synteny analysis requires larger contigs still not available in some ongoing genome drafts. Consequently, synteny was confirmed partially for T. rangeli and T. conorhini (Figure 6). Only the two upstream genes were found ...
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The Assessment of the Character Profile of Wood-based House Users in the Czech Republic
... each region was prepared, processed and assessed ...each region data acquisition and fi lling of questionnaires took 3 to 5 days within one scheduled week, always with one person as ...
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Chromosomal Evolution and Patterns of Introgression in Helianthus
... ABSTRACT Knowledge of the nature and extent of karyotypic differences between species provides insight into the evolutionary history of the genomes in question and, in the case of closely related species, the potential ...
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Comparative Oncogenomics Implicates the Neurofibromin 1 Gene (NF1) as a Breast Cancer Driver
... deleted region, and all of which contained the tumor suppressor Nf1 (Neurofibromin 1), Omg (oligodendrocyte myelin glycoprotein; this gene lies within an intron of Nf1), Wsb1 (WD repeat and SOCS box-containing ...
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