taxonomic classification
The concept of prototyping purpose : towards a new kind of taxonomic classification
... A prototype can be generally defined as a preliminary version of a final product and it can represent both aesthetic and functional features. Prototyping, the process of building a prototype, constitutes an indispensable ...
10
Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT
... accurate taxonomic classification at appropri- ate taxonomic ranks, ...higher taxonomic rank than known ...no taxonomic cutoff rank for classification needs to be ...the-art ...
14
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
... on classification methods that are implemented either in QIIME 1 or QIIME ...assay classification of noisy sequence data and simulated data to assess idealized performance ...
17
Support Vector Machine Based Tool for Plant Species Taxonomic Classification
... Plant identification is the process of matching a specimen plant to a known taxon [1] and it is an fundamentally challenging. The herbal plays a vital role in siddha medicals and the prediction of plants helps to ...
15
IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences
... for classification benchmarking Three reference datasets were used to evaluate the per- formance of different classifiers with leave-one-out cross-validation (Additional file 1: Figure ...
14
Functional and taxonomic classification of a greenhouse water drain metagenome
... The taxonomic and functional classi- fication was performed with MG-RAST server using the RefSeq and SEED subsystem databases with default pa- rameters, respectively (Table ...each taxonomic level, using an ...
9
Draft genome sequences of eight bacteria isolated from the indoor environment: Staphylococcus capitis strain H36, S. capitis strain H65, S. cohnii strain H62, S. hominis strain H69, Microbacterium sp. strain H83, Mycobacterium iranicum strain H39, Plantibacter sp. strain H53, and Pseudomonas oryzihabitans strain H72
... preliminary taxonomic classification, eight isolates were selected for further genomic sequencing based on an assessment of their putative importance in the built ...
15
Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta
... the taxonomic classification in detail, we conducted both unconstrained heuristic searches for the best tree under the maximum likelihood (ML) [11] and maximum parsimony (MP) criterion [14] as well as ...
16
Improved data retrieval from TreeBASE via taxonomic and linguistic data enrichment
... The taxonomic classification system is an information storage and retrieval system [11], originally designed to be easily memorised ...the classification, the fact that names are not necessarily ...
15
Revised soil erodibility K factor for soils in the Czech Republic
... Abstract: In the territory of the Czech Republic there are more than 50% of agricultural soils exposed to water erosion; it is a very urgent problem both at present and for the future. It must be solved now when there is ...
9
MetAnnotate: function-specific taxonomic profiling and comparison of metagenomes
... phylogenetic classification can be done using an approach similar to that used by PhyloSift ...all taxonomic levels ...of taxonomic classification ...
8
Identification, Validation and Classification of the Genus Phyllanthus in Nigeria Using ITS Genetic Marker and the Taxonomic Implication
... for taxonomic classification. DNA barcoding is a taxonomic method that uses a short genetic marker in an organism's DNA to identify it as belonging to a particular species (Paul et ...
7
Geophysical variables as predictors of megabenthos assemblages from the northern Great Barrier Reef, Australia
... The resolution of the analog video precluded taxonomic classification of individual organisms to a specific level, and so these broad categories were considered detailed enough to captur[r] ...
18
ADONIS AESTIVALIS: PHARMACOLOGICAL AND TOXICOLOGICAL ACTIVITIES - A REVIEW
... This review was designed to shed light on chemical constituents, pharmacological and toxicological effects of Adonis aestivalis.. Taxonomic classification.[r] ...
7
Comparative analysis of sugarcane bagasse metagenome reveals unique and conserved biomass-degrading enzymes among lignocellulolytic microbial communities
... A taxonomic classification of the bagasse metagenome reviews the predominance of Proteobacteria, which are also found in high abundance in other aerobic ...
17
Combining morphological and genomic evidence to resolve species diversity and study speciation processes of the Pallenopsis patagonica (Pycnogonida) species complex
... Background: Pallenopsis patagonica (Hoek, 1881) is a morphologically and genetically variable sea spider species whose taxonomic classification is challenging. Currently, it is considered as a species ...
29
Canine babesiosis: from molecular taxonomy to control
... the taxonomic classification of these parasites was hampered for the best part of one hundred years by the fact that within these general size ranges, their morphological features did not permit further ...
9
Bioinformatic Genome Comparisons for Taxonomic and Phylogenetic Assignments Using Aeromonas as a Test Case
... of taxonomic controversies exist within the Aeromo- nas genus, namely, the synonymity of the following groups: the proposed novel species ...Aeromonas taxonomic and phylogenetic studies ...above-mentioned ...
13
The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples
... is already sufficient to accurately obtain taxonomic com- position (at < 1% dissimilarity to the ‘true’ composition at 200 million reads). However, even 200 million reads per sample is not enough to obtain the ...
15
Taxonomic studies on Brazilian legumes with forage potential Sesbania, Lupinus
... grain classification, VISHNU-MITTRE & SHARMA (1962) considered the genus Sesbania as being eurypalynous because the species studied were found to be represented by six pollen types (Table ...
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