The chicken genome
Endogenous retroviruses of the chicken genome
... Using a combined evidence approach that integrates ab initio element detection with sequence similarity searches, motif identification and evaluation of element features we detected 11 novel ERV families covering more ...
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Chicken (Gallus gallus) endogenous retrovirus generates genomic variations in the chicken genome
... We further examined full-length GGERV10 elements or solo-LTRs, which were probably derived from homolo- gous recombination between LTRs. The remaining 532 GGERV10elements were grouped into five subfamilies, based on ...
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A BAC-based physical map of the chicken genome
... The third approach to contig verification involved screening the source BACs of the physical map using DNA markers (Table 3), primarily by the overgo hybridization method (Ross et al. 1999). If a contig was assembled ...
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Biased Distributions and Decay of Long Interspersed Nuclear Elements in the Chicken Genome
... the chicken are not AT biased, possibly due to the less-pronounced isochore structure of the chicken ...the chicken genome repeats are lost from highly recombining regions, probably the same ...
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Integration Targeting by Avian Sarcoma-Leukosis Virus and Human Immunodeficiency Virus in the Chicken Genome
... total chicken ERVs and the ASLV-related ERV subset have accumulated outside of TUs, and the minority of ERVs within TUs were typically in antisense orientation rela- tive to host cell ...of chicken ERVs ...
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Structural variation in the chicken genome identified by paired-end next-generation DNA sequencing of reduced representation libraries
... reference genome for 16 SVs, and confirmed our ...the chicken genome or chicken phenotypes remains unclear, especially because the functions of these genomic regions are largely unknown ...in ...
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Molecular Cytogenetic Definition of the Chicken Genome: The First Complete Avian Karyotype
... ABSTRACT Chicken genome mapping is important for a range of scientific ...the chicken and other birds is thus a ...each chicken chromosome using chromosome painting and mapping of individual ...
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Bioinformatics analysis of whole genome resequencing data in the chicken
... the chicken genome, as such errors are not considered in the algorithm of large indel ...the genome is because some of the mate-pairs match incorrectly in the pairing pipeline and are considered as ...
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Genome wide analysis reveals the extent of EAV HP integration in domestic chicken
... the chicken genome in the context of recent evi- dence demonstrating it to regulate the expression of the oocyan phenotypes in some chicken ...reference genome and we propose that these might ...
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Chicken genomics
... the chicken represents the first non-mammalian amniotic spe- cies to have its genome sequenced; and so far, the chicken reference genome represents the best assembled and annotated avian ...
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The Genomic Landscape of Short Insertion and Deletion Polymorphisms in the Chicken (Gallus gallus) Genome: A High Frequency of Deletions in Tandem Duplicates
... small genome size in birds through DNA ...on genome size (P etrov ...the chicken genome is much lower than that of mam- mals (10% ...avian genome size being governed by selection on ...
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Low number of mitochondrial pseudogenes in the chicken (Gallus gallus) nuclear genome: implications for molecular inference of population history and phylogenetics
... the chicken and other eukaryotic genomes Our search of the chicken nuclear genome indicates the presence of 13 apparently independent integrations of mitochondrial DNA ...nuclear genome and ...
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The Use of Primed in situ Synthesis (PRINS) to Analyze Nucleolar. regions (NORs) and telomeric DNA sequences in the domestic chicken genome.
... domestic chicken genome (Gallus domesticus) whose diploid number is ...the chicken karyotype, similarly to other birds, there is a group of microchromosomes for which the determination of morphology ...
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The Genome of the Chicken DT40 Bursal Lymphoma Cell Line
... use of this source of genetic variation, increasing the proportion of the genome that is near-homozygous. A large number of mutations were found in the coding regions of the DT40 genome. Although the ...
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CRISPR mediated somatic cell genome engineering in the chicken
... cell genome engineering is a highly ef- fective method to achieve genetic mutations in a subset of cells of the chicken ...the genome (Mali et ...
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Analysis of chicken anemia virus genome: evidence of intersubtype recombination
... CAV genome, cloning and sequencing were carried out as pre- viously described, briefly, primers VP1F: 5 ’ AGCC- GACCCCGAACCGCAAGAA ’ 3 and VP1R: 5 ’ TCA GGG CTG CGT CCC CCA GTA CA ’ 3 were used to amplify the VP1 ...
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Integration of genome wide association studies and whole genome sequencing provides novel insights into fat deposition in chicken
... Identification of candidate genes, overlap with selection signature regions, haplotype blocks and SNP screening. The goal of this study was to investigate PCGs based on literature information to pro- vide new insights ...
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Discovery of genomic variations by whole-genome resequencing of the North American Araucana chicken
... making it diverse among the myriad species within the Aves lineage. Selected traits include morphological features such as body size (bantam, broiler), plumage, egg-laying ability and egg color (white, brown, blue), and ...
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Genome reconstruction of a novel carbohydrate digesting bacterium from the chicken caecal microflora
... of genome from metagenomics data remains challenging, however genomes of several novel lineages and organisms have been reconstructed ...draft genome of a previously undescribed bacterium from the caecal ...
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Haplotype-based genome-wide association studies for carcass and growth traits in chicken
... of the adipocyte-speci fic gene ( Fontaine et al., 2008 ). LMBR1 is the limb development membrane protein 1, and the SNP in this gene was signi ficantly associated with obesity in humans ( Wu et al., 2017 ). FGF7 is the ...
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