Transcription Profiles
Host Transcription Profiles upon Primary Respiratory Syncytial Virus Infection
... Respiratory syncytial virus (RSV) is a common cause of severe lower respiratory tract infection in children. Severe RSV disease is related to an inappropriate immune response to RSV resulting in enhanced lung pathology ...
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Heterogeneity in HIV and cellular transcription profiles in cell line models of latent and productive infection: implications for HIV latency
... In unstimulated J-Lat 9.2, however, we observed many cellular genes for which expression positively corre- lated with HIV targets, and this correlation was also observed with housekeeping genes, suggesting that HIV ...
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Differences in brain gene transcription profiles advocate for an important role of cognitive function in upstream migration and water obstacles crossing in European eel
... several transcription factors from the IEG (Immediate Early Genes) family under its regulation, calmodulin is strongly linked to learning and memory [75-78], as found in ...
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Expression Profiles of Bovine Adeno-Associated Virus and Avian Adeno-Associated Virus Display Significant Similarity to That of Adeno-Associated Virus Type 5
... the transcription profile of A-AAV and com- parison of the transcription profiles of B-AAV and ...overall transcription profile of A-AAV is presented in ...
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Gene Expression Differences in Lungs of Mice during Secondary Immune Responses to Respiratory Syncytial Virus Infection
... Gene expression 5 days after RSV challenge. (i) Differences between primary and secondary immune responses. Next, host transcription profiles of mice with an initial RSV infection or mock administration ...
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Deep RNA Sequencing Reveals Complex Transcriptional Landscape of a Bat Adenovirus
... Data collection and mapping of reads. The above-mentioned librar- ies were sequenced as 49-mers using the standard Illumina GA pipeline (version 1.6). Sequencing adaptors, reads containing greater than 10% unknown bases, ...
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Spatially coordinated dynamic gene transcription in living pituitary tissue
... Multi-state transcription dynamics achieve robust tissue level ...of transcription between ...cells transcription dynamics are essentially random and ...Multi-state transcription dynamics ...
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Original Article Determination of whole transcription profiles and specific pathways in invasive ductal breast carcinoma
... peutic targets and molecular classifiers. At present, the main large-scale application of microarrays is comparative expression analy- sis. Microarray technology makes it possible to analyze the expression ...
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Histological analysis and transcription profiles on somatic embryogenesis in interspecific hybrids of Elaeis guineensis × E oleifera
... Expression of SERK genes has been related to the ac- quisition of cellular totipotency, which is essential for embryogenesis [33] and can be followed by pluripotency and finally organogenesis. Indeed, highly embryogenic ...
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Transcription profiles of the responses of chicken bursae of Fabricius to IBDV in different timing phases
... that transcription profiles of IBDV-infected cells were also different at 24, 48, 72 and 96 h post- infection, which was in accordance with our results ...
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Contribution of the epigenetic mark H3K27me3 to functional divergence after whole genome duplication in Arabidopsis
... example, transcription factors were reported to be the most enriched gene ontology category among the H3K27me3 target genes [3], and they are expected to be tightly regulated due to their crucial role in the ...
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Characterization and expression analysis of a newly identified glutathione S transferase of the hard tick Haemaphysalis longicornis during blood feeding
... In summary, a new GST in the hard tick H. longicornis was identified, and recombinant GSTs were synthesized. Both GSTs of H. longicornis were characterized in silico, using various available software applications; in ...
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H4K12ac is regulated by estrogen receptor-alpha and is associated with BRD4 function and inducible transcription
... ChIP-seq reads were mapped to the human reference genome (UCSC HG19) using Bowtie (version 1.0.0) [63]. Sam files from Bowtie were converted into bam files by SAMtools [64]. DeepTools [65] was used to create bigwigs by ...
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Bacterial Nucleoid Associated Protein Uncouples Transcription Levels from Transcription Timing
... a transcription factor that do not function in the context of such a temporal program would have no reason, a priori, to exhibit an elaborate temporal expression ...
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Detection of Salmonella enterica Serovar Rissen in Slaughter Pigs in Northern Ireland
... Xba1-PFGE profiles were generated from 23 of the 29 isolates and analysis of these identified 19 that displayed a common profile consisting of 15 bands which ranged in size from 20 kb to 668 kb ...Xba1 ...
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Differential Cellular Requirements for Activation of Herpes Simplex Virus Type 1 Early (tk) and Late (gC) Promoters by ICP4
... cellular transcription machinery is differ- ent at times when early and late genes are ...general transcription ma- chinery that contribute to ICP4 activation of two structurally distinct promoters, the ...
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Genome wide DNA methylation profiles in progression to in situand invasive carcinoma of the breast with impact on gene transcription and prognosis
... With data from two independent cohorts of normal tissue and DCIS, we report that the DNA methylation profiles of DCIS were radically changed compared with normal breast tissue, involving more than 5,000 genes. One ...
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EVI1 promotes cell proliferation in HBx-induced hepatocarcinogenesis as a critical transcription factor regulating lncRNAs
... lncRNAs profiles of various diseases in mouse models ...in transcription factors, such as Evi1, such phenomenon does not exist, they have very high interspecies ...
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A reverse-engineering approach to dissect post-translational modulators of transcription factor's activity from transcriptional data
... MINDy is computationally intensive and requires a large amount of memory due to large number of samples in our GEP compendium [5]. Thus, before running MINDy we had to reduce the number of samples. To this end, we built ...
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Inference of RNA Polymerase II Transcription Dynamics from Chromatin Immunoprecipitation Time Course Data
... We next applied the model to pre-mRNA data from Singh and Padgett [6] where the delay in appearance of pre-mRNA signal at exon-intron junctions was used to compute estimates of transcrip- tion speed for 9 genes. Figure ...
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