Transcriptome analysis using a Mc. capsulatus whole-genome
Genome-wide transcriptome analysis in murine neural retina using high-throughput RNA sequencing
... A transcriptome analysis path was adopted as shown in ...NCBI37/mm9) using Bowtie [17] . Splice junctions were then identi fied using TopHat [18] and transcript abundances were calculated ...
8
Integrated clinical, whole genome, and transcriptome analysis of multisampled lethal metastatic prostate cancer
... comparison using well-curated da- tabases and a larger number of cases, but they suggest that the field would likely benefit from the ability to do such ...conclusion, analysis of the “deep” data set avail- ...
15
Whole Genome Transcriptome Analysis of the Association between Obesity and Triple Negative Breast Cancer in Caucasian Women
... obese women, 401 genes were highly significantly (P<0.01) differentially expressed. A complete list of all the significantly differentially 257[r] ...
21
Whole genome transcriptome polymorphisms in Arabidopsis thaliana
... density whole genome tiling array is a powerful platform for comparative transcriptome profiling in addition to devel- opmental expression analysis ...our analysis tools will certainly ...
17
Whole genome transcriptome polymorphisms in Arabidopsis thaliana
... density whole genome tiling array is a powerful platform for comparative transcriptome profiling in addition to devel- opmental expression analysis ...our analysis tools will certainly ...
17
Screening the human exome: a comparison of whole genome and whole transcriptome sequencing
... the transcriptome, only 69% aligned to exactly one location and could be kept in the ...the genome, without the help of intervening and variable intron sequences it is much harder to align a read to the ...
8
Analysis of the bread wheat genome using whole-genome shotgun sequencing
... wheat genome have been substantial barriers to genome ...hexaploid genome using 454 pyrosequencing, and comparison of this with the sequences of diploid ancestral and progenitor ...hexaploid ...
6
Comparison of phi29-based whole genome amplification and whole transcriptome amplification in dengue virus
... during genome replication in a host, resulting in the formation of closely related viruses known as ...Before analysis, it is crucial to increase the amount of DNA because of the limited amounts of viral ...
7
Whole genome and transcriptome amplification: practicable tools for sustainable tissue biobanking?
... 2006 using non-standardized ...respectively, using the DNeasy Blood and Tissue and the RNeasy Mini Kits (Qiagen, Hilden, Germany), ...mm) using the EZ1 DNA Tissue kit (Qiagen) and an RNA extraction ...
11
Analysis of homozygosity disequilibrium using whole genome sequencing data
... data analysis of HD in the human ...complete analysis of WGS data for HD. Two new homozygosity association analysis modules, a regression-based analysis for unrelated individuals and a ...
5
Mutational analysis of non-coding genome in prostate cancer using whole genome sequencing
... the genome may relate to ...coding genome due to cost of WGS or because there is certain level of difficulty in interpreting non-coding ...non-coding genome which is freely available has made it ...
70
Analysis of Whole Transcriptome Sequencing Data: Workflow and Software
... input materials and other experimental parameters. RSeQC [21] is a Python-based package program that provides several metrics containing sequence quality, GC bias, polymerase chain reaction bias, nucleotide composition ...
7
Analysis of whole genome-wide microRNA transcriptome profiling in invasive pituitary adenomas and non-invasive pituitary adenomas
... MiRNAs, mediate post-transcriptional regulation, play an important role in epigenetic regulation. Its precursor is cleavage by Dicer enzyme, and then combined with AGO protein and other components to form RISC (RNA ...
7
Analysis of genetic systems using experimental evolution and whole-genome sequencing
... Herring et al. [8] recognized that clonal interference shaped the evolution of their populations, and they attempted to discover competing clonal lineages by sequencing the hand- ful of candidate genes suggested by their ...
6
Analysis of genetic systems using experimental evolution and whole genome sequencing
... Herring et al. [8] recognized that clonal interference shaped the evolution of their populations, and they attempted to discover competing clonal lineages by sequencing the hand- ful of candidate genes suggested by their ...
5
Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data
... for whole-transcriptome gene expression ...study using RNA-sequencing data from the well established MAQCA and MAQCB reference ...processed using five workflows (Tophat-HTSeq, ...
11
Whole genome sequence analysis of Mycobacterium suricattae
... 726595 G T T:N 571 ATT AAC Rv0631c recD-recC 3294 725013 728306 - Probable exonuclease V (gamma chain) RecC (exodeoxyribonuclease V gamma chain)(exodeoxyribonuclease V polypeptide) information pathways Involved in ...
63
Estimation and partition of heritability in human populations using whole-genome analysis methods
... three whole-genome analysis methods that use mixed linear models (MLM) to estimate genetic variation, using the relationship between close or distant relatives based on pedigree or ...MLM. ...
27
Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing
... Moscow, Russia. 59 Dmitry Rogachev National Research Center of Pediatric Hematology, Oncology and Immunology, Moscow, Russia. 60 Center For Medical Innovation, Seoul National University Hospital, Seoul, South Korea. 61 ...
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Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification
... genetic analysis of clinical samples collected directly from patients without culture adaptation, an approach was used that selectively ampli- fies parasite DNA from low blood volume clinical sam- ...selective ...
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