Viral/analysis
Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis
... Virome capture sequencing. Libraries were prepared by essentially following the standard KAPA protocol but including viral sequence cap- ture, following mainly the SeqCap RNA enrichment system protocol ...
12
Genetic Analysis of Serum-Derived Defective Hepatitis C Virus Genomes Revealed Novel Viral cis Elements for Virus Replication and Assembly
... Defective viral genomes (DVGs) of hepatitis C virus (HCV) exist, but their biological significances have not been thoroughly ...Sequencing analysis of DVGs revealed the existence of deletion hot spots, with ...
17
A cheap and open HIV viral load technique applicable in routine analysis in a resource limited setting with a wide HIV genetic diversity
... Human immunodeficiency virus (HIV) infection is a major public health problem in the world, particularly in sub-Saharan Africa where the majority of patients live. An outstanding characteristic of the virus is its ...
7
Analysis of viral diversity for vaccine target discovery
... A common approach for study of antigenic diversity is evolutionary (phylogenetic) analysis [6]. Genetic diversity of viruses is related to antigenic diversity, however they are not the same. Some evolutionary ...
15
<p>Epidemiology, Outcome and Risk Factors Analysis of Viral Infections in Children and Adolescents Undergoing Hematopoietic Cell Transplantation: Antiviral Drugs Do Not Prevent Epstein–Barr Virus Reactivation</p>
... A relatively low percentage of infections with CARV origin was observed in our analysis. CARV respiratory tract infections have been recognized as a signi fi cant cause of morbidity and mortality in patients with ...
10
Comprehensive Analysis of Ebola Virus GP1 in Viral Entry
... in viral entry in at least two ...structural analysis of the Ebola virus GP1 by either X-ray or nuclear magnetic resonance studies in the near ...of viral glycoproteins has been well demonstrated by ...
13
Organization of type C viral DNA sequences endogenous to baboons: analysis with cloned viral DNA.
... 590 BATTULA, HAGER, AND TODARO DISCUSSION In this study we investigated the organization of the multiple sequences of the type C viral DNA endogenous to baboons by using labeled probes t[r] ...
10
Experimental Analysis of Mimivirus Translation Initiation Factor 4a Reveals Its Importance in Viral Protein Translation during Infection of Acanthamoeba polyphaga
... 2D-DIGE analysis and protein MALDI-TOF MS identification. Proteomic analysis was performed by the use of 2D-DIGE as previously described ...an analysis of variance (ANOVA) score (P value) lower than ...
13
Analysis of viral and somatic activations of the cHa-ras gene.
... 260 Downloaded from http://jvi.asm.org/ on November 10, 2019 by guest The activation of the cHa-ras oncogene in the EJ/T24 bladder carcinoma cell line was compared with the activation of[r] ...
6
Duck gut viral metagenome analysis captures snapshot of viral diversity
... h. Viral nucleic acid was extracted from the nuclease treated filtrate using High Pure Viral Nucleic acid Kit (Roche) and QIAamp viral RNA mini kit (Qia- ...of viral nucleic acids. The ...
8
Functional Analysis of a Crustacean MicroRNA in Host-Virus Interactions
... FIG 4 Roles of host miR-7 in virus-host interactions. (a) Shrimp were injected simultaneously with WSSV and wsv477-siRNA or with WSSV and wsv477- mutation-siRNA, respectively. WSSV only was included in one of the injec- ...
8
Chemostat culture systems support diverse bacteriophage communities from human feces
... BLASTN analysis against a database of contigs from the exact same subject, and contigs with high degrees of similarity (E-value < 10 −20 ) over 50 % of the length of the shorter contig were assigned to the same ...
16
Viral Phenotypes and Antibody Responses in Long-Term Survivors Infected with Attenuated Human Immunodeficiency Virus Type 1 Containing Deletions in the nef and Long Terminal Repeat Regions
... fragment length analysis. Nef1 remained asymptomatic and antiretroviral ther- apy naı¨ve until 2004, 19 years after infection, when the subject commenced antiretroviral therapy due to a high viral load and ...
11
Genome structure of HBI, a variant of acute leukemia virus MC29 with unique oncogenic properties.
... Analysis of the viral RNAs of two clonal isolates of HBI-MC29 by T1 oligonucleotide fingerprinting showed that sequences from the viral transformation-specific region, v-myc, which are d[r] ...
10
Distribution of baboon endogenous virus among species of African monkeys suggests multiple ancient cross-species transmissions in shared habitats.
... Amplification and analysis of LTR sequences. As the am- plified RT gene fragments did not prove to be a good deter- minant for the presence of BaEV and both the RT gene and env fragments contain few ...
11
The influence of polymorphic GSTM1 gene on the increased susceptibility of non-viral hepatic cirrhosis: evidence from observational studies
... Subgroup analysis of cirrhosis type revealed that GSTM1 null was a prominent risk factor for alcoholic HC (OR = ...subgroup analysis of population indicated that the significant differences only existed in ...
9
Mechanism of retroviral genomic RNA dimerization and packaging
... SHAPE analysis shows that nucleotides within the dual UCUG motifs exhibit a conserved reactivity pattern, such that the first U and the final G experience the strongest extent of protection (emphasized with red ...
126
Proteins of Vasicular Stomatitis Virus
... From our analysis of protein removed from the viral core by DOC treatment, we conclude that viral proteins 2 and 4 are wholly derived from the viral envelope or coat.. Some protein simil[r] ...
10
Highly efficient genetic transduction of primary human synoviocytes with concentrated retroviral supernatant
... if viral titer influenced the transduction efficiency of FLS, we optimized a rapid, efficient, and inexpensive centrifugation method to concentrate recombinant retroviral ...a viral enhanced green ...
9
Mode of action of SDZ NIM 811, a nonimmunosuppressive cyclosporin A analog with activity against human immunodeficiency virus type 1 (HIV-1): interference with early and late events in HIV-1 replication.
... PCR analysis in HIV-1 IIIB-infected MT4 cells in one cycle of virus ...of viral preintegration complexes (9, ...for viral DNA synthesis and trans- location into the nucleus were established, showing ...
11