Whole genome sequence analysis
Whole genome sequence analysis of serum amino acid levels
... The analysis strategy and results presented here estab- lish a paradigm for whole genome sequence analysis of quantitative risk factor ...incomplete. Whole genome ...
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Whole genome sequence analysis of Mycobacterium suricattae
... 1286274 GC G Rv1159 1296 1284992 1286287 + Mannosyltransferase PimE cell wall and cell processes Polyprenol-phosphate-mannose dependent mannosyltransferase involved in phosphatidylinosit[r] ...
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Detection and whole genome sequence analysis of an enterovirus 68 cluster
... length genome sequence of a repre- sentative EV68 isolate, which contributes to the four published full genome sequences of EV68; that of the prototype Fermon, that of the French 37-99 strain and two ...
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Comparative whole genome sequence analysis of wild type and cidofovir resistant monkeypoxvirus
... We report here the first whole genome sequence of a CDV-R poxvirus. Our data revealed a plethora of substi- tutions within the CDV-R MPV genome, one-third of which were distributed throughout ...
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Comparative whole genome sequence analysis of the carcinogenic bacterial model pathogen Helicobacter felis
... felis genome by only two sensors and two response regulators (in addition to the aforemen- tioned CheA/Y system regulating chemotaxis), which all share high homology with their orthologues in other Helico- bacter ...
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Whole Genome Sequence Analysis of Multidrug Resistant Campylobacter Isolates: a Focus on Aminoglycoside Resistance Determinants
... A whole-genome sequencing (WGS) approach was conducted in order to identify the molecular determinants associated with antimicrobial resistance in 12 multidrug-resistant Campylobacter jejuni and ...
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Whole Genome Sequence Analysis of Streptococcus pneumoniae Strains That Cause Hospital Acquired Pneumonia Infections
... and whole- genome sequencing analyses revealed that 18 of the 19 pneumonia cases were caused by ...(CC9999), sequence type 282 (ST282), and ...
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Whole-genome sequence of Schistosoma haematobium
... Phylogenetic analysis. Single-copy genes within the S. haematobium genome were inferred using stringent searches for nucleotide sequence homology against the genomes of ...to genome scaffolds) ...
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Whole Genome Sequence of a Turkish Individual
... Although whole human genome sequencing can be done with readily available technical and financial resources, the need for detailed analyses of genomes of certain populations still ...and analysis of ...
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To Get the Whole Picture, Sequence the Whole Genome Comparing whole genome sequencing and exome sequencing
... exome sequence data is ...with whole genome ...the genome targeted by exon capture. Finally, LOH analysis can have reduced power (depending on the size of the deletion) given the uneven ...
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Accuracy of imputation to whole-genome sequence in sheep
... standard deviation of the five accuracies divided by the square root of 5. Results All imputation accuracy results presented are based on imputation from the Ovine Infinium ® HD BeadChip SNP (~ 500 k) to WGS, except when ...
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Kuwaiti population subgroup of nomadic Bedouin ancestry—Whole genome sequence and analysis
... on genome annotation Based on the locations of the variants relative to annotated genes in the genome, we classi fied the variants into broad classes such as intergenic, intronic, and coding variants ...
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Cancer of the ampulla of Vater: analysis of the whole genome sequence exposes a potential therapeutic vulnerability
... depth analysis of a limited number of tumor ...genomic analysis to aid treatment decisions is quickly becoming ...genomic analysis in patients with rare cancers, we applied whole genome ...
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Analysis of ANK3 and CACNA1C variants identified in bipolar disorder whole genome sequence data.
... Acknowledgements The UCL clinical and control samples were collected with the support from the Bipolar Organization, the Neuroscience Research Charitable Trust, the Central London NHS Blood Transfusion Service, The ...
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Use of Whole Genome Sequence Data To Infer Baculovirus Phylogeny
... on whole genome sequence data were evaluated using data from nine complete baculovirus ...distance analysis and a novel method developed here, termed neighbor pair ...This analysis ...
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Transposable element detection from whole genome sequence data
... resolution, analysis of split reads is critical for identifying features indicative of TPRT activ- ity including transductions, target site duplications, endo- nuclease cleavage site, and the addition of ...
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Insights into Three Whole-Genome Duplications Gleaned from the Paramecium caudatum Genome Sequence
... this analysis is based solely on sequence data, additional biochemical experiments will be necessary to test the function of these genes in the different aurelia species and confirm (or refute) the ...
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Dynamic pathway analysis of genes associated with blood pressure using whole genome sequence data
... genetic analysis of longi- tudinal phenotypic data is important for understanding the genetic architecture and biological variations of com- plex ...The analysis can help identify the stage of disease ...
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Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Whole Genome Sequence Based Typing of Listeria monocytogenes
... The analysis is reduced to coding regions only because the second-generation sequencing instruments currently in use produce only relatively short reads that do not assemble the frequently highly repetitive ...
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Variation in mitochondrial genome primary sequence among whole-genome-sequenced strains of Neurospora crassa
... recent analysis of the mitochondrial proteome is adding to the understanding of the role of nuclear and mitochondrial P et ...the whole genome sequencing of Neurospora strains represent defective ...
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