[PDF] Top 20 A predicted protein interactome for rice
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A predicted protein interactome for rice
... a predicted interactome from rice that is useful for hypothesis generation towards better understanding of protein-protein interactions in rice and also other monocotyledonous ... See full document
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The Protein Interactome of Streptococcus pneumoniae and Bacterial Meta-interactomes Improve Function Predictions
... every protein is represented by a profile that reflects the probability of having a certain ...tal protein interaction network of ...interacting protein with a functionally annotated ortholog in ...we ... See full document
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Conserved Central Intraviral Protein Interactome of the Herpesviridae Family
... Full interactome coverage is, at present, still a distant target for individual techniques, and repositories and integrative pipelines like the one underlying the ...computationally predicted PPIs does not ... See full document
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Profiling the interactome of protein kinase C ζ by proteomics and bioinformatics
... than predicted by the node de- grees alone ...PKCζ interactome network has relatively higher clustering coefficient and higher small- world index as compared to the random networks ...PKCζ ... See full document
11
Conserved Central Intraviral Protein Interactome of the Herpesviridae Family
... ABSTRACT Protein interactions are major driving forces behind the functional pheno- types of biological ...of protein-protein interactions (PPIs), ...intraviral protein interactomes for ... See full document
16
Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information
... lar interactome is an intermediate goal, embedded in an involved discovery ...complete protein-protein interaction network for target genomes, using interactome data from related organisms ... See full document
6
Zeretzke, Christine (2006): A genome-wide analysis of protein-protein interactions in Kaposi’s sarcoma-associated herpesvirus (KSHV). Dissertation, LMU München: Medizinische Fakultät
... A comparison of the two independent large-scale screens in Sacharomyces cerevisiae may provide some insight into how much false data is produced by this approach (Ito et al., 2000; Uetz et al., 2000). Ito and colleagues ... See full document
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Disulfide proteomics of rice cultured cells in response to OsRacl and probenazole-related immune signaling pathway in rice
... the protein quantity was in- creased in cultured cells expressing CA- or DN- OsRac1 compared to the wild type, although reactive cysteine residues could be detected in cultured cells expressing CA- OsRac1 not in ... See full document
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Elucidation of the ebola virus VP24 cellular interactome and disruption of virus biology through targeted inhibition of host-cell protein function
... The genomes of RNA viruses have limited encoding capacity, and therefore viral proteins usually possess multiple functions in the cell and virus life cycle. The elucidation of these interactions provides a better ... See full document
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Comparative analysis of protein interactome networks prioritizes candidate genes with cancer signatures
... human protein-protein interaction (PPI) datasets were assembled from different databases and ...of protein interactions with multiple pieces of evidence in the literature (Lit-BM) [22], a collection ... See full document
9
New interaction partners for Nek4.1 and Nek4.2 isoforms: from the DNA damage response to RNA splicing
... Figure 2 Interaction networks of the retrieved Nek4.1 and Nek4.2 interactors from IP-MS. The selected most relevant enriched GO biological processes are depicted in (A) Nek4.1 and (B) Nek4.2 networks by clustering the ... See full document
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Evaluation of Popular Rice ( Oryza sativa L.) Hybrids for Quantitative, Qualitative and Nutritional Aspects
... of rice may be defined as the ability of rice grain to stand milling and polishing without undue breakage so as to yield the greatest amount of total recovery and the highest proportion of head rice ... See full document
8
Plant genome informatics: evaluation and analysis of genomic DNA features involved in the transcriptional processing of protein coding genes
... Feature component modules consist of a Perl encoded DSO (data source object), web service scripts providing unique functionality to each feature component, data management scripts for loading features from flat files of ... See full document
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Minimizing bias in target selection by exploiting multidisciplinary Big Data and the protein interactome.
... objective assessment of large numbers of known or potential protein targets – especially when integrated with the other means of target analyses available through canSAR. Particularly important are the pub- lished ... See full document
6
Olfactory bulb proteome dynamics during the progression of sporadic Alzheimer’s disease: identification of common and distinct olfactory targets across Alzheimer-related co- pathologies
... that protein regulation determined by iTRAQ-based approach is more trustworthy regarding the overall expression change of a protein as they are not influenced by any isoform ...CAM-proteoglycan ... See full document
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A human skeletal muscle interactome centered on proteins involved in muscular dystrophies: LGMD interactome
... As an approach towards the identification of skeletal muscle functional networks, we undertook a large-scale study to establish a proteome-scale map of protein- protein interactions centered on proteins ... See full document
19
An algorithm to parse segment packing in predicted protein contact maps
... A drawback of the frozen approximation is that initial values need to be provided and these can sometimes only be obtained from unreliable predictions, especially when there is a paucity of sequence data. The current ... See full document
12
Nonstructural protein Pns4 of rice dwarf virus is essential for viral infection in its insect vector
... In order to investigate the functional role of Pns4 of RDV, the RNAi activity induced by dsRNA specific for the Pns4 gene (dsPns4) was examined in cultured leaf- hopper cells. Cultured leafhopper cells were treated with ... See full document
7
The interactome of the amyloid β precursor protein family members is shaped by phosphorylation of their intracellular domains
... PI-PLC plays a general role in removing GPI-anchored proteins from the cell surface. There is some evidence that GPI-anchored proteins play a part in β-secretase activity and Aβ secretion, though no real role in ... See full document
14
Beads-free protein immunoprecipitation for a mass spectrometry-based interactome and posttranslational modifications analysis
... K protein IP was performed using the Matrix-ChIP platform as previously described [3] with ...with protein A (Sigma; P7837) by incubating overnight at room temperature with 200 μL of 2 μg/mL protein ... See full document
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