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Copyright © 2001, American Society for Microbiology. All Rights Reserved.

Separation of Human Immunodeficiency Virus Type 1 Replication

from

nef

-Mediated Pathogenesis in the Human Thymus†

KAREN M. DUUS, ERIC D. MILLER,‡ JONATHAN A. SMITH,

GRIGORIY I. KOVALEV,ANDLISHAN SU*

Department of Microbiology and Immunology, Lineberger Comprehensive Cancer Center, School of Medicine, University of North Carolina, Chapel Hill,

North Carolina 27599-7295

Received 22 September 2000/Accepted 9 January 2001

Human immunodeficiency virus type 1 (HIV-1) is frequently attenuated after long-term culture in vitro. The attenuation process probably involves mutations of functions required for replication and pathogenicity in vivo. Analysis of attenuated HIV-1 for replication and pathogenicity in vivo will help to define these functions. In this study, we examined the pathogenicity of an attenuated HIV-1 isolate in a laboratory worker accidentally exposed to a laboratory-adapted HIV-1 isolate. Using heterochimeric SCID-hu Thy/Liv mice as an in vivo

mod-el, we previously defined HIV-1envdeterminants (HXB/LW) that reverted to replicate in vivo (L. Su, H.

Kane-shima, M. L. Bonyhadi, R. Lee, J. Auten, A. Wolf, B. Du, L. Rabin, B. H. Hahn, E. Terwilliger, and J. M. McCune, Virology 227:46–52, 1997). Here we further demonstrate that HIV-1 replication in vivo can be sep-arated from its pathogenic activity, in that the HXB/LW virus replicated to high levels in SCID-hu Thy/Liv

mice, with no significant thymocyte depletion. Restoration of thenefgene in the recombinant HXB/LW genome

restored its pathogenic activity, with no significant effect on HIV-1 replication in the thymus. Our results suggest that in vitro-attenuated HIV-1 lacks determinants for pathogenicity as well as for replication in vivo.

Our data indicate that (i) the replication defect can be recovered in vivo by mutations in theenvgene, without

an associated pathogenic phenotype, and (ii)nefcan function in the HXB/LW clone as a pathogenic factor that

does not enhance HIV-1 replication in the thymus. Furthermore, the HXB/LW virus may be used to study

mechanisms of HIV-1nef-mediated pathogenesis in vivo.

Human immunodeficiency virus type 1 (HIV-1) diseases (AIDS) are associated with high levels of HIV-1 viremia and

depletion of CD4⫹T lymphocytes. In vivo, HIV-1 can infect

diverse cell types, including CD4⫹T cells, macrophages,

den-dritic cells, Langerhans cells, and hematopoietic progenitor cells (13, 24, 30, 39, 42). However, the HIV-1 isolates used in many studies have been expanded and maintained in immor-talized human T-cell lines. The different selective pressures in vitro have led to the generation of variants with attenuated replication and pathogenicity in vivo (38). Many laboratory-adapted isolates of HIV-1 show defects in the functions of

some genes, such asenv,vpr,vpu, andnef(38). A good example

of such adaptation in vitro is Lai/IIIB (human T-cell lympho-tropic virus strain IIIB) (6). Initially derived from a human patient blood sample and cultured in MT2/B cells, Lai/IIIB stock was prepared by infecting the human leukemia T-cell line H9 with infected MT2/B-cell supernatant. Subsequent analyses of the genome from the Lai/IIIB isolate showed that multiple changes accumulated during expansion in vitro (38). For ex-ample, the HXB2 genome cloned from Lai/IIIB carries muta-tions that lead to premature termination of three of the nine

open reading frames (ORFs): vpr, vpu,and nef. Many other

subtle mutations also may have accumulated. These mutations do not usually affect HIV-1 replication in vitro under specific culture conditions, although some of them may enhance viral replication in certain cell lines. However, it remains unclear which mutations contribute to attenuated HIV-1 replication and pathogenesis in vivo.

It has been difficult to analyze HIV-1 functions specifically involved in pathogenicity. Mutations in putative pathogenic

factors such as nef orenv in simian immunodeficiency virus

(SIV) or HIV-1 have led to reduced viremia in vivo (1, 14, 34, 40). Thus, the reduced pathology may be due to a reduced viral load in vivo. Such pathogenic factors are therefore also

repli-cation factors. Transgenic mouse models in which nef is

ex-pressed constitutively in thymocytes and CD4⫹T and

macro-phage cells lead to CD4⫹T-cell depletion and other AIDS-like

symptoms, suggesting thatnefmay be a principal pathogenic

factor (15). However, problems arise with transgenic mouse

models during attempts to correlatenefexpression with

virus-mediated pathogenicity. First, the level and time of transgenic

nefexpression are very different from those in HIV-1 infection

in humans. Second, murine host cells may respond differently

to HIV-1nefproteins. Therefore, whether nefis a factor for

replication and/or pathogenicity in vivo is still not clear. Comparison of HIV-1 isolates attenuated in vitro with pathogenic revertants in vivo will help to identify viral deter-minants important for replication and pathogenesis in vivo. One example of a factor involved in pathogenicity is found in

SHIV (SIV-HIV envchimeric genome) adapted in monkeys.

SHIV variants with enhanced replication and pathogenicity have been isolated from monkeys infected with SHIV

recom-* Corresponding author. Mailing address: Lineberger Comprehen-sive Cancer Center, Department of Microbiology and Immunology, School of Medicine, University of North Carolina, Chapel Hill, NC 27599-7295. Phone: (919) 966-6654. Fax: (919) 966-8212. E-mail: lsu @med.unc.edu.

† This paper is dedicated to the memory of Eric D. Miller. ‡ Deceased.

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binant viruses (19). Mutations in HIVenv genes have been identified which contribute to enhanced replication in

mon-keys. Interestingly, env determinants have also been defined

that specifically contribute to CD4⫹ T-cell depletion (i.e.,

pathogenicity) but not replication in monkeys (12). Therefore,

uniqueenvdeterminants have intrinsic pathogenic activity in

monkeys.

The Lai/IIIB isolate and its associated infectious molecular clones (e.g., HXB2) were found to infect T-cell lines such as H9 as well as peripheral blood mononuclear cells (PBMCs) in vitro but to be replication defective in vivo (14, 34, 40). When a laboratory worker was accidentally infected by Lai/IIIB, in-fectious virus was isolated from plasma by infection of primary PBMCs but not by infection of T-cell lines (22, 43). We have previously used SCID-hu Thy/Liv mice as an in vivo model (29,

31) to study the replication of HXB2 and of HXB2 recombi-nant viruses containing HIV-1 fragments isolated from the infected laboratory worker (40). Like Lai/IIIB, HXB2 failed to replicate in the Thy/Liv organ (4, 40). Replacement of an

HXB2 subgenomic fragment containing theenvORF with the

corresponding fragment from the laboratory worker isolate (LW12.3) generated a recombinant virus (HXB/LW) which replicated in SCID-hu Thy/Liv mice and in the human fetal thymus organ culture (HF-TOC) model (23, 40). The specific in vivo replication determinants were mapped to the region

from V1 to V3 of the HXB/LWenvgene (40). Therefore, the

attenuated Lai/IIIB isolate acquired in vivo replication activity

by mutational reversion of theenvgene in the infected

labo-ratory worker.

We used the SCID-hu Thy/Liv model to study the patho-genic activity of HXB/LW. HXB/LW replicated to high levels in the SCID-hu Thy/Liv mouse and HF-TOC models. How-ever, the pathogenic activity of HXB/LW was significantly

re-duced. Restoration of the defective nef ORF in HXB/LW

resulted in enhanced viral pathogenicity, with no significant effect on viral replication, in both the SCID-hu Thy/Liv mouse and the HF-TOC models. Thus, we demonstrated in this study that it was possible to separate the replication activity of a recombinant HIV-1 clone from its pathogenicity in vivo and

that an intact nef ORF was able to serve exclusively as an

HIV-1 pathogenic factor in the replication-competent recom-binant virus.

FIG. 1. Similar replication kinetics of HXB/LW and NL4–3 in SCID-hu Thy/Liv mouse and HF-TOC model systems. (A) Replication of HXB/LW and NL4–3 in SCID-hu Thy/Liv mice. Levels of p24 capsid protein associated with 106cells are shown on theyaxis. Each column

represents the average values for each virus (numbers in parentheses are numbers of animals), along with standard error bars. (B) Replication of HXB/LW and NL4–3 in HF-TOC. Thymus fragments were infected with equivalent infectious units, and thymocytes were harvested at various times postinfection. Levels of p24 capsid protein associated with 106cells are shown on theyaxis. Data represent the average values at the indicated

[image:2.612.136.471.407.626.2]

times (numbers in parentheses are numbers of donors), along with standard error bars. (C) Quantitation of proviral DNA. Human thymocytes from SCID-hu Thy/Liv mice infected with NL4–3 (two SCID-hu Thy/Liv mice; panels NLa and NLb), HXB/LW (three SCID-hu Thy/Liv mice; panels LWa to LWc), or HXB2 (panel HB) were assayed by 10-fold dilution of infected cells into uninfected human cells. Lanes 1, 10,000 sample cells; lanes 2, 1,000 sample cells plus 9,000 normal human cells; lanes 3, 100 sample cells plus 9,900 normal human cells. ACH2 cells (one HIV-1 genome per cell) were used as standard controls (lane 4, 10 ACH2 cells plus 9,990 normal human cells; lane 5, 1 ACH2 cell plus 9,999 normal human cells; lane 6, 10,000 normal human cells).␤-Globin primers were used as internal controls.

TABLE 1. Summary of HIV-1 isolates and clones

HIV-1 PBMCa Thy-Repb

Presence (⫹) or absence (⫺) of the following

HIV-1 gene:

nef vpr vpu

Lai/IIIB ⫹ ⫺ ⫺ ⫺ ⫺

HXB2 ⫹ ⫺ ⫺ ⫺ ⫺

NL4-3 ⫹ ⫹ ⫹ ⫹ ⫹

HXB/LW ⫹ ⫹ ⫺ ⫺ ⫹

aAbility to replicate in activated human PBMCs. bAbility to replicate in human thymus.

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[image:3.612.57.547.59.607.2]

FIG. 2. Reduced pathogenicity of HXB/LW in human thymus. (A) Replication and pathogenic activities of NL4–3, HXB2, and HXB2/LW in SCID-hu Thy/Liv mice. SCID-hu Thy/Liv mice were injected with equivalent infectious units of each virus, and thymocytes were analyzed at 4 weeks postinfection. Levels of cell-associated p24 antigen in 106thymocytes were measured. (B) Comparison of CD4thymocyte depletion in

SCID-hu Thy/Liv mice infected with HXB/LW or NL4–3. Thymocytes from the infected SCID-hu Thy/Liv organs shown in Fig. 1A were analyzed by FACS for CD4 and CD8. The total percentages of CD4⫹thymocytes (CD4CD8and CD4CD8) are shown on theyaxis. The percentage

of total CD4⫹cells in mock-infected animals at each time point in each experiment was set to 100%. The results shown are the average values,

along with standard error bars. (C) Immunohistochemical staining of NL4–3- and HXB/LW-infected SCID-hu Thy/Liv organs. Frozen sections of NL4–3-infected (upper panels) and HXB/LW-infected (lower panels) SCID-hu Thy/Liv organs (6 weeks postinfection [wpi]) were stained with human anti-HIV serum and hematoxylin-eosin to detect HIV antigens and thymocytes, respectively. Magnifications:⫻10 for left panels and⫻60 for right panels. (D) Comparison of CD4⫹thymocyte depletion in HF-TOC infected with HXB/LW or NL4–3. Thymocytes isolated from the

infected HF-TOC fragments shown in Fig. 1B were analyzed by FACS for CD4 and CD8. The total percentages of CD4⫹thymocytes (CD4CD8

and CD4⫹CD8) are shown on theyaxis. The percentage of total CD4cells in mock-infected tissues at each time point in each experiment was

set to 100%. The results shown are the average values, along with standard error bars.

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MATERIALS AND METHODS

Construction of recombinant HIV-1 genomes.HXB2 genomic DNA was di-gested withSalI andBamHI to remove a 2.7-kb fragment, and the corresponding fragment from LW12.3 was ligated into the provirus DNA to generate the HXB/LW provirus. The mutations invprandnefare still present in the HXB/LW genome (22, 40).

Construction of HXB/LW-nef⫹(HXB/LWn⫹) was carried out by first sub-cloning the 3⬘ half of the HXB/LW provirus into pBluescript (pBS) SK(⫹) (Invitrogen). The HXB/LWnefgene was then repaired by a recombination PCR (RPCR) site-directed mutagenesis method described previously (11). First, the 3⬘half of the HXB/LW proviral genome was amplified by PCR with primer HC5 (GGGTGTCGACATAGCAGAATAGGC), which includes theSalI site in the

vprgene, and primer HIV3⬘-X (CGGCTCTAGAGATTTTCCACACTGACTA AAAGG), which anneals to the 3⬘ terminus of the genome and contains a 3⬘-terminal XbaI site. This genomic fragment was subcloned into pBS. The resulting pBS.HIV-LW.Sal/Xba plasmid (pBS-3⬘HX/LW) was then used as tem-plate DNA for RPCR mutagenesis as previously described in detail (11). Briefly, two pairs of overlapping primers were used in RPCR mutagenesis. The mu-tagenizing primer pair bound to overlapping regions of the HXB/LWnefgene. The primers (forward, 5⬘-CCCTGATTGGCAGAACTACACACC-3⬘; re-verse, 5⬘-GTAGTTCTGCCAATCAGGGAAGTAGCC-3⬘) incorporated an AT-GC base change (underlined residues) which repaired the premature stop codon in the HXB/LWnefgene. The nonmutagenizing primer pair bound to overlapping regions of the pBS Amprgene (5-GATGTAACCCACTCGTGCA CCCAACTGAT-3⬘; 5⬘-GGGTGCAGCAGTGGGTTACATC-3⬘). One primer from each pair was used in two separate PCRs, each of which amplified about

half of the plasmid template and incorporated the base change from the mu-tagenizing primers. The two sets of reaction products were pooled, cleaned, and transformed directly into library-competentEscherichia coliDH5␣cells (Gibco-BRL). The mutagenized plasmid was then generated by in vivo recombination between the overlapping ends of the PCR products (44).

Two clones were sequenced; both carried the repairednefgene. One of these was used to generate a recombinant proviral genome by subcloning the 3⬘

fragments back into the HXB/LW genome. A low-mutation-rate polymerase with proofreading capability (Boehringer Mannheim Biochemicals) was used in all PCRs. However, as additional confirmation that the DNA amplification did not interfere with either the replication or the pathogenicity of the mutant, a non-mutagenized control plasmid was generated in a parallel reaction. Thenef⫹ mutant pBS-3⬘LWn⫹and thenefcontrol pBS-3LWnplasmids were both digested withSalI andXbaI and gel purified. HXB/LW proviral plasmid DNA was digested withSalI andXhoI and gel purified. The digested proviral plasmid DNA was partially ligated at the SalI site with either the 3⬘-LWn⫹or the 3⬘-LWn⫺insert. A293T cells were transfected with the partially ligated DNA using Effectine reagent (Qiagen, Inc.), and the viral supernatant was collected after 48 h and amplified in phytohemagglutinin (PHA)-activated PBMCs. The HXB/LWn⫹proviral DNA was used directly as a template for sequencing with primers from either side of the insert based on sequences from HXB2. Se-quences were confirmed from both strands.

[image:4.612.124.483.72.360.2]

HIV-1 replication in PBMCs and viral supernatant production.Proviral DNA (0.8␮g) was transfected into A293T cells, and supernatants were used to infect PHA-activated PBMCs as described previously (23, 39). Supernatants were col-lected and analyzed by a multinuclear activation of a galactosidase indicator

FIG. 3. Repairednefgene did not alter HXB/LW replication kinetics. (A) The expression ofnefin A293T cells transfected with proviruses encoding HXB2, HXB/LWn⫺, and HXB/LWn⫹was detected by Western blot analysis. The same blot was probed with an antitubulin MAb to monitor total protein levels. (B) The expression ofnefin H9 T cells infected with HXB2, HXB/LWn⫺, and HXB/LWn⫹was detected by Western blot analysis. NL4–3-infected H9 cells were included as positive controls. The same blot was probed with an antitubulin MAb to monitor total protein levels. (C) Similar levels of HXB/LWn⫹, HXB/LWn⫺, and NL4–3 replication in SCID-hu Thy/Liv mice. SCID-hu Thy/Liv organs were infected with equivalent infectious units, and thymocytes were harvested at various times. Levels of p24 capsid protein associated with 106cells are

shown on theyaxis. Each column represents the average of three independent experiments (numbers in parentheses are numbers of animals), along with calculated standard error bars. (D) Similar levels of HXB/LWn⫹, HXB/LWn⫺, and NL4–3 replication in HF-TOC. Fetal thymus fragments were infected with equivalent infectious units, and thymocytes were harvested at various times. Levels of p24 capsid protein associated with 106cells are shown on theyaxis. Values at each time point represent averages from four independent experiments (numbers in parentheses

are numbers of donors), along with calculated standard error bars.

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(MAGI) assay performed as previously described using U373-MAGI-CXCR4CEMglioblastoma cells (41). Supernatants with titers of greater than 5⫻ 104infectious units (IU)/ml were stored as viral stocks for infection.

Western blot analysis ofnefexpression.Western blot analysis was performed with total cell extracts from transfected A293T cells or infected H9 T cells as described previously (23). The anti-nefpolyclonal antibody (kindly provided by R. Swanstrom, University of North Carolina, Chapel Hill) was used to detect the

nefprotein. NL4–3 virus-infected H9 cells were used as positive controls. An antitubulin monoclonal antibody (MAb) was used to monitor protein levels.

Infection of SCID-hu Thy/Liv mice or HF-TOC.Animal transplantation pro-cedures for SCID-hu Thy/Liv construction have been described elsewhere (32). Infection of SCID-Thy/Liv mice was performed as previously described (39). Briefly, SCID-hu Thy/Liv mice were infected with supernatants collected from PHA-activated PBMCs containing no HIV-1 (mock) or 4⫻104IU of HIV-1/ml. Fifty microliters (⬃2,000 IU) was injected into each thymus graft. Biopsy spec-imens were obtained from Thy/Liv organs at various times, and thymocytes were analyzed for p24 and proviral DNA. Thymocyte subsets were analyzed with a fluorescence-activated cell sorter (FACS) as described below.

The HF-TOC procedures were modified slightly from those described previ-ously (4). Briefly, human fetal thymi (19 to 24 gestational weeks) were dissected into⬃2-mm3fragments containing at least three to five intact thymic lobules under a dissecting microscope. These fragments were transferred onto sterile or-gan culture membranes (Millipore) floating on medium (RPMI medium, 10% fetal calf serum, 50␮g of streptomycin/ml, 50 U of penicillin G/ml, minimal essential medium vitamin solution [Gibco-BRL], insulin-transferrin-sodium se-lenite medium supplement [Sigma]) in six-well tissue culture plates. Equal amounts of virus (⬃800 IU) in 20␮l of supernatant from infected PHA-activated PBMCs or 20␮l of control supernatant from mock-infected PHA-activated PBMCs was added to each fragment. The fragments were then cultured at 37°C in 5% CO2for 7 to 12 days with daily changes of culture medium. Thymocytes were teased out of the fragments and analyzed as described above.

Viral replication assays.p24 production (picograms/106thymocytes) was mea-sured using a Vironostica p24 enzyme-linked immunosorbent assay (ELISA) kit (Organon Teknika Corp., Durham, N.C.) and cell lysate in phosphate-buffered saline (PBS)–1% Triton X-100. Semiquantitative DNA PCR analysis was per-formed as described previously (23, 39). Briefly, human thymocytes from HIV-1-or mock-infected Thy/Liv grafts were assayed by 10-fold dilution of infected cells into uninfected human cells. Genomic DNA was prepared from the mixed cells. ACH2 cells (one HIV-1 genome per cell) were used as standard controls.

Immunohistochemistry.At 6 weeks postinfection, SCID-hu Thy/Liv organs were fixed in PBS–4% paraformaldehyde, frozen, and sectioned. They were then stained with human anti-HIV-1 serum as described previously (3).

[image:5.612.55.291.71.689.2]

Flow cytometric analyses.Thymocytes isolated from SCID-hu Thy/Liv organs or HF-TOC fragments were stained with phycoerythrin-CD4 and tricolor-CD8 (Caltag) in PBS–2% fetal bovine serum, washed, and resuspended in PBS–1% formaldehyde as previously described (23, 39).

FIG. 4. Repairednef gene enhanced pathogenesis in HXB/LW-infected thymus. (A) Similar levels of thymocyte depletion in HXB/ LWn⫹- and NL4–3-infected SCID-hu Thy/Liv mice. SCID-hu Thy/Liv mice were injected with equivalent infectious units of virus, and

thymocytes were harvested at 4 weeks postinfection and analyzed by FACS. The thymocyte subpopulations were expressed as a percentage of the events in the live gate. The levels of p24 capsid protein associ-ated with 106thymocytes in each SCID-hu Thy/Liv mouse were as

follows: LWn⫹, 490 ng; LWn⫺(HXB/LW), 670 ng; and NL4–3, 67 ng. (B) Pathogenesis kinetics in SCID-hu Thy/Liv mice infected with HXB/LWn⫹, HXB/LWn⫺, and NL4–3. Thymocytes from the infected SCID-hu Thy/Liv organs shown in Fig. 3C were analyzed by FACS at the times shown on thexaxis. The total percentage of CD4⫹

thymo-cytes relative to that in mock infections is shown on theyaxis. The percentage of total CD4⫹cells in mock-infected animals at each time

in each experiment was set to 100%. The results shown are the average values, along with standard error bars. (C) Pathogenesis kinetics in HF-TOC infected with HXB/LWn⫹, HXB/LWn⫺, and NL4–3. Thy-mocytes from the infected HF-TOC fragments shown in Fig. 3D were analyzed by FACS at the times shown on thexaxis. The total percent-age of CD4⫹thymocytes relative to that in mock infections is shown on

theyaxis. The percentage of total CD4⫹cells in mock-infected animals

at each time in each experiment was set to 100%. The results shown are the average values, along with standard error bars.

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RESULTS

HXB/LW and NL4–3 infect the human thymus with similar

replication kinetics.NL4–3 and HXB/LW, as well as HXB2,

are derived from the Lai/IIIB isolate (Table 1). They all rep-licate efficiently in PHA-activated PBMCs (40). HIV-1 repli-cation in the SCID-hu Thy/Liv model was assessed by a p24 antigen ELISA and by DNA PCR analysis. As previously re-ported (40), no significant HXB2 replication was detected up to 6 weeks postinoculation. In contrast, challenge with the recombinant HXB/LW virus was associated at 3 to 6 weeks postinfection with high levels of viral replication, comparable to that seen in NL4–3-infected Thy/Liv organs (Fig. 1A). Sim-ilar results were obtained after infection with the same HIV-1 clones in the HF-TOC model (4, 40). Analysis of data from 18 independent experiments demonstrated that NL4–3 and HXB/ LW replicated to similar levels, with similar kinetics, in the HF-TOC model (Fig. 1B). Quantitation of proviral DNA con-firmed that about 10% of human thymocytes were infected with HXB/LW, comparable to the infection levels seen with NL4–3 (Fig. 1C) or primary isolates (39, 40).

HXB/LW replication was uncoupled from pathogenicity in

the human thymus. The HXB2 clone failed to replicate and

thus showed no detectable p24 capsid protein or thymocyte depletion (Fig. 2A). NL4–3 infection of SCID-hu Thy/Liv

or-gans led to significant depletion (up to 90% of total CD4⫹

thymocytes relative to the results obtained for mock-infected

Thy/Liv organs) of CD4⫹thymocytes at 3 to 8 weeks

postin-fection (Fig. 2A and B). In contrast, HXB/LW, with a level of replication similar to that of NL4–3, showed no significant depletion of thymocytes at up to 6 weeks postinfection (Fig. 2A and B). Immunohistochemical detection of infected cells in SCID-hu Thy/Liv organs infected with HXB/LW revealed large numbers of thymocytes expressing HIV antigens within well-defined cortex and medulla of intact thymic lobules (Fig. 2C, lower panels). As previously reported (3), NL4–3 infected Thy/Liv organs were dramatically disrupted, and thymocytes were depleted (Fig. 2C, upper panels).

Similar pathogenesis was observed with the HF-TOC system (4). Only NL4–3-infected HF-TOC fragments showed

signifi-cant thymocyte depletion relative to that in mock-infected fragments by 12 days postinfection (Fig. 2D).

The results of the replication and pathogenesis studies clear-ly established a difference in the pathogenic activities of HXB/ LW and NL4–3. The replication activity of HXB/LW could be separated from its pathogenic activity in both models of thymic HIV-1 infection. This uncoupling of replication from pathoge-nicity enabled us to use the HXB/LW virus to map replication-independent genomic determinants of pathogenicity in vivo.

Restoration of thenefORF in HXB/LW restored thymocyte

depletion in the human thymus. Like the LW12.3 clone

iso-lated from the infected laboratory worker, HXB/LW encoded

defective nefandvpr genes (Table 1) (40). Since it has been

reported thatvpris not required for the replication and

patho-genicity of HIV-1 in the SCID-hu Thy/Liv model (2, 18), we

tested whether nefcould enhance the pathogenicity of HXB/

LW in the in vivo model. HXB/LW with a restorednefORF

(HXB/LWn⫹) was generated by repairing the premature stop

codon in the HXB/LWnefgene (see Materials and Methods).

An unmutagenized control virus (HXB/LWn⫺) was

simulta-neously generated with similar procedures. The HXB/LWn⫺

control virus was phenotypically indistinguishable from HXB/ LW in T-cell lines, in the HF-TOC system, and in SCID-hu

Thy/Liv mice (data not shown). As expected, HXB/LWn⫹, but

not HXB2 or HXB/LWn⫺ (or HXB/LW), expressed a

full-lengthnefprotein in both transfected A293T cells and infected

human T cells (Fig. 3A and B).

HXB/LWn⫹ and HXB/LWn⫺ showed similar replication

activities in SCID-hu Thy/Liv mice (Fig. 3C) and HF-TOC (Fig. 3D). However, when pathogenic activity was analyzed in

these experiments, infection by HXB/LWn⫹led to thymocyte

depletion at levels similar to those observed in NL4–3

infec-tions (Fig. 4A), whereas HXB/LWn⫺-infected tissues showed

no significant thymocyte depletion. Kinetic analysis of

thymo-cyte depletion showed that HXB/LWn⫹was similar to NL4–3

in pathogenicity, while HXB/LWn⫺ showed no significant

pathogenic activity until late times postinfection (Table 2 and Fig. 4B and C). These results clearly demonstrated that

[image:6.612.56.552.83.245.2]

repair-ing the premature stop codon of the HXB/LWn⫺nefgene was

TABLE 2. Summary of SCID-hu Thy/Liv mouse model viral replication and pathogenesis

Wk

postinfection Virus animalsNo. of

Mean % of cells (SD) that were Mean ng of p24 (SD)/106cells Livea CD4CD4CD8CD8

2 Mock 5 72.9 (10.8) 13.3 (3.7) 77.1 (5.7) 5.6 (1.0) 0

HXB/LWn⫺ 6 76.2 (10.4) 12.2 (3.7) 67.0 (29.9) 6.6 (0.6) 1.3 (1.4)

HXB/LWn⫹ 6 82.6 (4.6) 10.9 (1.5) 80.2 (2.3) 7.6 (1.5) 3.3 (2.7)

NL4-3 5 61.8 (11.3) 19.8 (11.0) 49.5 (11.8) 16.8 (5.7) 15.6 (14.1)

4 Mock 4 50.9 (14.5) 16.7 (7.5) 72.4 (8.0) 9.1 (1.2) 0

NXB/LWn⫺ 5 45.0 (29.7) 15.6 (3.1) 55 (24.0) 22.1 (14.1) 210.9 (191.2)

HXB/LWn⫹ 5 6.7 (5.0) 12 (10.8) 5.4 (5.7) 49.9 (17.7) 261.2 (313.2)

NL4-3 4 12.1 (4.2) 16.0 (8.6) 3.4 (1.8) 49 (15.1) 229.7 (240.5)

6 Mock 2 75.1 (3.9) 9.6 (1.8) 86.7 (2.1) 3.2 (0.4) 0

HXB/LWn⫺ 2 19.2 (15.4) 22 (8.0) 57.3 (18.5) 14.3 (4.5) 37.1 (4.6)

HXB/LWn⫹ 2 7.1 (0.4) 3.9 (4.1) 4.4 (1.2) 78.4 (2.0) 72.3 (23.2)

NL4-3 2 10.1 (3.6) 1.9 (1.0) 1.8 (0.5) 82.7 (6.9) 45.5 (12.3)

aPercentage of cells in live gate.

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sufficient to restore pathogenicity to this virus, without signif-icantly altering its replication kinetics.

The replication of HXB/LW was genetically separable from

thymocyte depletion in SCID-hu Thy/Liv organs.To analyze

the relative replication and pathogenic activities of HXB/LW

(with or without a functionalnefgene) and NL4–3, we plotted

the pathogenicity of each virus against its replication as de-scribed previously (5). In comparison to NL4–3 standard curves generated from 10 independent SCID-hu Thy/Liv ex-periments (32 SCID-hu Thy/Liv mice infected with NL4–3)

(Fig. 5A) or 26 independent TOC experiments (100

HF-TOC fragments infected with NL4–3) (Fig. 5B), HXB/LWn⫺

showed significantly reduced pathogenic activity at similar viral loads. In both model systems, all but two of the data points for

HXB/LWn⫺remained above the NL4–3 standard curves (Fig.

5), demonstrating the reduced pathogenicity of this virus. In

contrast, HXB/LWn⫹and NL4–3 from the same experiments

showed similar pathogenic activities in both the SCID-hu Thy/

Liv and the HF-TOC models (Fig. 5). The highR2value (0.76)

for the HF-TOC NL4–3 standard indicates that the data points fit with the nonlinear regression model (5). However, the low

value (R2 0.17) for the SCID-hu Thy/Liv NL4–3 standard

suggests that some data points did not fit the regression line as well. This lack of fit was probably due to greater thymocyte depletion at late times after infection with NL4–3 in Thy/Liv organs (Fig. 4B) that led to reduced cell-associated p24 levels (3, 39). The HF-TOC cultures did not reach the same level of depletion (Fig. 4C).

Collectively, our results demonstrate that HXB/LWn⫺has

the ability to replicate in vivo, but with significantly reduced

pathogenic activity. Furthermore, an intact nefORF can

re-store its pathogenic activity, with no significant effect on its replication in the thymus.

DISCUSSION

From a laboratory worker accidentally exposed to an atten-uated HIV-1 isolate, viruses have been recovered that have reverted to replicate in vivo (40, 43). Using SCID-hu Thy/Liv mice as an in vivo model for HIV-1 replication and pathogen-esis, we showed that the replication activity of a recombinant HIV-1 clone derived from the laboratory worker isolate was separable from its pathogenicity in vivo.

For other lentiviruses, single point mutations have been shown to convert an attenuated virus to a pathogenic one in vivo. However, pathogenic activity always has been correlated with enhanced replication activity. For example, lower viral loads were associated with reduced pathogenicity of SIV with

anefdeletion in monkeys (20) or of HIV-1 in SCID-hu Thy/Liv

mice (17). In a recent study of several CCR5-dependent HIV-1 isolates, Scoggins et al. also correlated replication efficiency in SCID-hu Thy/Liv mice with pathogenicity (37). The present study documented the first example of unique structural de-terminants in HIV-1 that appear to enhance infectivity but not pathogenicity in vivo.

Interestingly, the SalI-BamHI fragment of HXB2 that was

[image:7.612.57.292.65.431.2]

replaced by that of LW12.3 in HXB/LW also showed in vivo defects in replication and pathogenicity in the SHIV genome (26, 35). In one report, SHIV-HXB2c demonstrated greatly reduced replication in infected monkeys compared with SHIV-89.6 (a primary HIV-1 isolate), although both chimeric viruses replicated efficiently in simian peripheral blood lymphocytes in vitro (35). Both reports indicated that laboratory-adapted HIV-1 isolates may have accumulated mutations in important genes for in vivo replication and transmission. Even SHIV-89.6 showed reduced replication and pathogenicity in monkeys. After several passages in vivo, SHIV variants with enhanced replication and pathogenicity accumulated (19). Thus, multiple determinants appear to be involved in both replication and

FIG. 5. Relative pathogenicity of HXB/LWn⫹, HXB/LWn⫺, and NL4–3 correlated to the presence of an intactnefORF. (A) Patho-genic plot for SCID-hu Thy/Liv mice. p24 capsid protein levels (xaxis) were plotted against the total percentage of CD4⫹thymocytes relative

to that in mock infections (yaxis) for the time points from 2 to 6 weeks postinfection from the experiments shown in Fig. 3C. The NL4–3 standard regression curve was generated from 32 SCID-hu Thy/Liv mice infected with the NL4–3 virus from 10 different experiments (R20.17). Numbers of mice were as follows: HXB/LWn,n16

(F); HXB/LWn, n 18 (); NL4–3, n 14 (); and NL4–3 standard,n⫽ 32. (B) Pathogenicity plot for HF-TOC. p24 capsid protein levels (x axis) were plotted against the total percentage of CD4⫹thymocytes (yaxis) for all time points from the HF-TOC

ex-periments shown in Fig. 3D. The NL4–3 standard regression curve was generated from 100 HF-TOC assays of 26 different donor thymus tissues infected with the NL4–3 virus (R20.79). Numbers of tissues

were as follows: HXB/LWn⫺,n⫽9 (F); HXB/LWn,n8 (); and NL4–3 standard,n⫽100.

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pathogenesis or uniquely in pathogenicity independent of rep-lication.

Our results suggest that while the laboratory-attenuated Lai/ IIIB virus had recovered the ability to replicate in vivo through passage in the infected laboratory worker, it had not regained corresponding pathogenic activity. In the recombinant HXB/

LW, thenefgene can function as a pathogenic factor

indepen-dent of replication activity. We have shown that reversion of

the replication determinants in LW12.3envwas not sufficient

for pathogenicity in the human thymus. Restoration of thenef

gene was required for HIV-1 pathogenic activity in vivo. As

bothenvandnefare believed to be involved in replication as

well as pathogenicity, we propose that Lai/IIIB has been at-tenuated by mutations in multiple genetic determinants re-quired for replication and pathogenesis in vivo (Fig. 6). As the virus was passaged in vivo, we propose that replication

deter-minants inenvreverted to allow it to replicate more efficiently

in the infected laboratory worker. However, the attenuated pathogenic determinants had not yet reverted in the LW12.3 isolate from which the recombinant HXB/LW was derived. Additional pathogenic determinants are also implicated in the HXB/LW virus because, at late times postinfection, HXB/LW-infected Thy/Liv organs also showed low, but significant, levels of thymocyte depletion (Fig. 2 and 4 and Table 2). The delayed or attenuated pathogenic activity may be due to the attenuated

pathogenic LW12.3 env gene or to other HIV-1 pathogenic

factors.

Etemad-Moghadam et al. recently reported thatenv

muta-tions in in vivo-passaged SHIV were associated with increased resistance to neutralizing antibody and that these mutations exerted a negative effect on the pathogenic potential of the virus in some cell lines (12). Consistent with this report, one of

the sequence changes in theenvV3 loop common to HXB/LW

(40) and other isolates from the infected laboratory worker (25, 43) is associated with escape from antibody neutralization (10). Furthermore, this mutation interfered with the in vitro

pathogenicity of the virus (10). The CD4⫹T-cell count of the

infected laboratory worker has decreased in recent years, sug-gesting the emergence of pathogenic revertants. Unfortu-nately, no recent HIV-1 isolates from this patient are available for analysis. However, based on our model (Fig. 6), we predict

that additional changes in genes such asenvornefresulting in

enhanced pathogenicity will be observed in later-stage labora-tory worker isolates.

Many studies have demonstrated the importance of thenef

gene in the replication and pathogenicity of HIV-1. Alterations

and deletions in thenefgene have been associated with

long-term survivors (9, 21, 28, 36).nefhas multiple effects on

HIV-1-infected cells: it down-regulates the CD4 receptor and major histocompatibility complex class I molecules from the infected cell surface and alters multiple T-cell signaling pathways

(re-viewed in references 8 and 33). These activities ofnef have

been mapped to distinct functional domains of the protein (7, 16, 27). The HXB/LW virus provides a valuable system for

de-termining which functional domain of thenef protein is

re-quired specifically for in vivo HIV-1 pathogenicity in the

hu-man thymus. In addition, since the mechanism by whichnef

exerts its pathogenic activity in vivo is largely unknown, the HXB/LW virus may also be used to further examine

mecha-nisms ofnef-mediated pathogenesis in vivo.

ACKNOWLEDGMENTS

We are grateful to J. Harton for critical reading of the manuscript and to R. Swanstrom, M. Bonyhadi, J. M. McCune, and H. Kaneshima for helpful discussions. We thank the members of the S. Fiscus labo-ratory for providing PHA-activated PBMCs and for assistance with the p24 ELISA. The following reagent was obtained through the AIDS Research and Reference Reagent Program, Division of AIDS, NIAID, National Institutes of Health (NIH): U373-MAGI-CXCR4CEMcells

(Michael Emerman).

This work was supported by NIH grant AI41356 (to L.S.). K.M.D. is supported by a fellowship from the Irvington Institute of Immunolog-ical Research and Toys-R-Us, Inc. E.D.M. was funded in part by a Lineberger Comprehensive Cancer Center postdoctoral training grant (CA09156) and by the American Foundation for AIDS Research (am-fAR 70520–28-RFI).

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Figure

TABLE 1. Summary of HIV-1 isolates and clones
FIG. 2. Reduced pathogenicity of HXB/LW in human thymus. (A) Replication and pathogenic activities of NL4–3, HXB2, and HXB2/LW inSCID-hu Thy/Liv mice
FIG. 3. Repaired neffragments were infected with equivalent infectious units, and thymocytes were harvested at various times
FIG. 4. Repaired nefinfected thymus. (A) Similar levels of thymocyte depletion in HXB/LWn gene enhanced pathogenesis in HXB/LW-�- and NL4–3-infected SCID-hu Thy/Liv mice
+4

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