0095-1137/94/$04.00+0
Copyright (C 1994, AmericanSociety for Microbiology
Comparison of Phenotypic Methods and DNA Hybridization for
Detection of Methicillin-Resistant
Staphylococcus
aureus
PASCALE
RICHARD,'*
MICHELMEYRAN,2
ESTELLECARPENTIER,'
ANDRETHABAUT,2
AND HENRIB. DRUGEON1
Laboratoire deBacteriologie B, Hopital G.R. Laennec, 44035 Nantes
Cedex,'
and Laboratoire deBiologie Medicale,Hopitald'Instruction des Arm&es Begin, 94160Saint-Mande2France
Received22September 1993/Returned formodification 12November1993/Accepted 24November 1993
One hundred
thirty-eight
Staphylococcusaureusisolatesfrompatientswith severestaphylococcalinfections were collected in 15 French hospitals.Detectionof the mecgenewasperformed bydot blothybridizationwith a specific DNA probe. Dot blot results were used to characterizethe isolates as methicillin susceptible (77 isolates) or resistant (61 isolates). The isolates were screened for methicillin resistance by an agar spread method on Mueller-Hintonplates containingoxacillin (2and 10,ug/ml) and were incubated at37°C,with 108CFU as the inoculum. MICs of oxacillin and methicillin were determined by the agar dilution method on
Mueller-Hinton plateswithoutNaCl, by using105 CFU per spot, after24 and48hof incubationat30 or37°C.
ModeratelyelevatedMICswerefound for 20 isolates (14.5%).The mecgenewasdetectedin six (30%)ofthe
isolates expressinga low levelof resistance tomethicillin and/or oxacillin.Asdeterminedbycomparison with probehybridization results,thespread plate methodwith oxacillin at 2,ug/mlwas moresensitive(sensitivity,
100%) and specific (specificity, 100%o) than agardilution with either methicillin oroxacillin in identifying methicillin resistanceorsusceptibility. Determinations of methicillinandoxacillinMICsbytheagardilution
methodhad aspecificity of 99to100%dependingontheconditions ofincubation,butthesensitivitywasbelow
85%whateverthe durationortemperature of incubation.
The presence of a low-affinity penicillin-binding protein (PBP 2a) encoded by themecgeneis the main factor respon-sible for methicillin resistance instaphylococci(2, 14).Themec
gene and its product (PBP 2a) have never been found in
methicillin-susceptible Staphylococcus aureus,while theyhave
been detected in almost all methicillin-resistant S. aureus
isolates(MRSA) examinedsofar(1,2, 7, 11, 14,18, 21, 24,25).
Despite the invariable presence of these resistance
determi-nants in MRSA, phenotypic expression of methicillin resis-tance is strain specific andis oftenheterogeneous (4, 12, 13).
Thus, routine susceptibility tests may fail to identify MRSA,
particularly strains expressing a very low level of resistance. Although incubation at temperaturesbelow 37°C, prolonged incubation, use of media containing NaCl, and use of large inocula have been proposed for improving the detection of MRSA, there isnouniversal agreementonthechoice of either
an optimal procedure orMIC breakpoints for the
identifica-tion of methicillin resistance(4,5,8, 12,17, 19,23).Detection of the mec gene by DNA hybridization or PCR has been proved useful foridentification of MRSA (1, 7, 11, 14, 18, 21, 24, 25).Although these methods require specialized staff and
equipmentand maynotbeappliedin everyclinical
microbiol-ogylaboratory, they provideauseful tool for the evaluation of
procedures based onphenotypic expression of resistance. S. aureus isolates with a borderline level of resistance to methicillinoroxacillin have beenreported from time to time (7, 15, 16, 22). Three mechanisms of resistance have been
associated with this phenotype: mec-encoded resistance (ex-pression class 1), overproduction of penicillinase, and modifi-cations of normal PBPs (7, 15, 16, 22). Since there is no evidence thattheefficacyofmethicillinoroxacillin isimpaired
*Correspondingauthor. Mailing address: Laboratoire de
Bacteri-ologie A, Institut de Biologie des H6pitaux de Nantes, 9 Quai Moncousu,44035 NantesCedex, France. Phone: 40 08 39 58. Fax: 40 08 41 14.
for isolates with overproduction of penicillinase, it seems
importantto differentiate these isolates from those with
mec-related resistance (3). However, the frequencyof the border-line resistance phenotype and the relative frequency of the
corresponding resistance determinants havenotbeen studied
extensively.
The purposes of this study were to compare phenotypic
methods foridentificationof MRSA with detection of themec
gene byDNAhybridizationand toevaluate the frequency of
mec-encoded borderline resistance among French S. aureus
isolates.
(Part ofthis workwas presented at the 32nd Interscience
Conference on Antimicrobial Agents and Chemotherapy,
Anaheim, Calif., 1992.)
MATERIALS ANDMETHODS
Isolates. In1990, themicrobiologists from 15 French
hospi-tals (in Bordeaux,Brest, Clermont-Ferrand, Dijon, Grenoble,
Lille,Lyon,Montpellier, Nantes, Nice, Paris-Begin,Paris-Saint
Antoine, Poitiers, andStrasbourg)wererequested tosend all
isolates of S. aureus collected from patientswith systemic or
deep-seated infectionsto the Groupe d'Etude des Infections
S6veres
a Staphylocoques. A total of 138 isolates werecol-lected: 118 fromblood,8from skinorwoundabscesses,7from intravenouscatheters, and 5from othersources.
Spreadplatemethod.Allisolateswerescreened for oxacillin
resistance by using a modification of the spread plate test
describedby Archer and Pennell (1). A 100-,ulportion ofan
overnightMueller-Hinton broth (Difco Laboratories) culture
(approximately 108 CFU) was spread on Mueller-Hinton
plates (Difco Laboratories) containing 5% NaCl and oxacillin
atconcentrations of 2 and 10p,g/ml.Anygrowthafter2days of incubation at 37°C was considered indicative of resistance.
MIC determinations. MICsofoxacillin and methicillinwere
determinedby agardilutionon Mueller-Hinton plates (Difco
613
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TABLE 1. Detection ofmethicillin resistanceby DNAhybridizationand routinemicrobiologicsusceptibilitytests in 138 S. aureusisolatesa
No.of No.of isolates with indicated MIC
(jig/ml)
under incubationconditions shown isolates withspreadplate Oxacillin Methicillin
Hybridization result result
300C24h 30°C 48h 370C24h 37°C 48h 300C24 h 300C 48h 37°C 24 h 37°C48 h
OSb ORc
c2 .4 c2 .4 c2 .4 s2 .4 c8 .16 '8 .16 c8 .16 s8 .16
mecpositive(n =61) 0 61 26 35 23 38 16 45 14 47 10 51 10 51 12 49 12 49
mecnegative(n =77) 77 0 76 1 76 1 77 0 77 0 77 0 77 0 77 0 77 0
Total 77 61 102 36 100 39 93 45 91 47 87 51 87 51 89 49 89 49
aDetection ofthe mecgenewasperformed by dot-blot hybridization withaspecific DNA probe. The isolates werescreenedforoxacillin resistance byanagar spread platemethodonoxacillin(2and 10,ug/ml)-containing Mueller-Hinton plates incubatedat370C, with108CFU astheinoculum. MICsofoxacillinandmethicillin were determined by the agar dilution methodonMueller-Hinton plates without NaCl, using105CFUper spot, after24and48hofincubationat30or37°C.
bOS, oxacillin susceptible, i.e.,isolatesnotgrowingonthe plates with 2
p.g
of oxacillin per ml. cOR,oxacillinresistant,i.e., isolates growingontheplateswith2 ,ug ofoxacillin perml.Laboratories) without NaCl, after24and 48 h ofincubationat
30 or 37°C, by using
105
CFU per spot.Susceptibility
andresistance breakpointswerec2 and
.4
,ug/mlfor oxacillin and.8
and.16
,ug/mlfor methicillin(19, 20).MICsofoxacillin in the presence of clavulanic acid were also determined by theagardilutionmethodafterincubationat30°C,by using afixed
concentration of clavulanate (4
jig/mI).
,-Lactamase assays were performed with nitrocefin disks (Cefinase; bioMerieuxSA).
Dot blot hybridization. The mec-specific DNA probe was obtained from JohnKornblum,Public Health Research Insti-tute, New York, N.Y. The origin of this probe has been
described previously (22). Forhybridization experiments, the
probewasradiolabeled with
32P
byusingarandom-priming kit(Amersham FranceSA, LesUllis, France). Whole-celllysates
were prepared from 1 ml of an overnight broth culture. Bacterial cellswere pelleted by centrifugation andthen
resus-pendedandincubatedat37°Cfor 30 min inthefollowing lysis
buffer: 25 mMTrishydrochloride (pH 8.0), 10mMEDTA, 16
jig
oflysostaphinperml(Sigma Chemical Co.,St.Louis,Mo.)and 8
jig
of muramidase per ml (Sigma). The resultingprotoplastswerelysedwith sodiumdodecylsulfate(0.1%)and
20 ,ugofproteinaseK perml
(Sigma)
for 1 hat37°C. Samples(25
RI
each)oflysateswereloadedintothe wells ofadot blotapparatus (Schleicher & Schuell, Inc., Keene, N.H.) and
transferred to a nitrocellulose membrane. Hybridization and
washingswerecarriedoutbystandard methods(13).
Autora-diographswere exposedfor 4 hat -70°C.
Interlaboratoryagreement.Susceptibility testingand
detec-tionof themecgenewere
performed
attwo separatelabora-tories,and resultswerereportedto an independent
investiga-tor for
comparison.
For strains which showeddiscrepancies
betweenhybridization results andsusceptibility testingresults
andfor all strains withalow levelofresistance,the
hybridiza-tion resultswereverified.Atransportation medium(bacterial
strains storage medium; Sanofi
Diagnostics
Pasteur,Marnes-La-Coquette,France)wasinoculatedfrom the culture
used
forDNApreparation andsent tothe second
laboratory
for MICdeterminations in duplicate. The MIC determination results
were validated if the differences between all determinations
werewithin onelog 2 dilution. Forsixisolates, the
discrepan-cies between thehybridizationandMIC resultswereattributed
to a contamination of the storage culture used for the first determination.Forthe other 26isolatesthatwereretested,the
hybridization andsusceptibility testing resultswere
reproduc-ible.
RESULTS
Comparisonoftheprobe and spread plate results (Table1).
Theplates were read after 24 and 48 h of incubation because the first reading was difficult for some isolates (13 isolates)
giving pinpoint colonies. The reading was easier after 48 h of
incubation, but the interpretation remained unchanged.
Amongthe 138 staphylococcal isolates examined, 77 isolates
(55.8%) did not grow on the plates containing the lowest concentration of oxacillin (2 p.g/ml) and were classified as
oxacillin susceptible, while 59 isolates (42.7%) grew on the
plates containing the highest concentration of oxacillin (10
,ig/ml)
and were considered oxacillin resistant. Two isolates(1.5%) grew onlyontheplates containing oxacillin at 2 ,ug/ml. Of the 61 isolatesgrowingontheplates containing oxacillinat
2,ug/ml, 100% gaveapositive signal with the mec probe, while 100% of the 77oxacillin-susceptible isolates showed no detect-able hybridization. Thus, compared with the hybridization procedure, the spread plate test with oxacillin at 2 ,ug/ml hada
sensitivity and a specificity of 100%; with oxacillin at 10,ug/ml,
thesensitivity and the specificity of the spread plate testwere
96.7 and97.4%, respectively.
Comparison of the probe and MIC results (Table 1). The MICs of methicillin were .8 jig/ml for all mec-negative isolates, and theMICs of oxacillin were .2 ,ug/ml for 76 of the 77 mec-negative isolates. Under all test conditions, oxacillin MICs for 7 (11.5%) of the 61 mec-positive isolates were.2 jig/ml and methicillin MICs for 9 (14.75%)were .8 jig/ml. However, MICs of both oxacillin and methicillin wereeither inferior or equal to the National Committee for Clinical
LaboratoryStandards(NCCLS) breakpointsforsusceptibility
foronly fourmec-positive isolates (6.5%). With the NCCLS
breakpoints,MIC determinationswerehighly specific
(speci-ficity, 99 to 100% under allconditions)but lackedsensitivity. After 24 h ofincubation, theagar dilution had sensitivities of
57% (30°C) and 73% (37°C)for oxacillin and sensitivitiesof
83% (30°C) and 80% (37°C) formethicillin. When the
incu-bationlasted 48h,the resultsobtained with methicillin didnot
change but the sensitivities for oxacillin increased to 62%
(30°C) and 77% (37°C). Changing the MIC breakpointsdid notresult in sensitivity andspecificityboth greater than 90%.
Low-level resistance. Twenty isolates (14.5%) expressed a
loworborderline level of resistancetomethicillinoroxacillin
(MICsof
methicillin,
4 to 16,ig/ml;
MICs ofoxacillin,
1 to4,ug/ml) under any of the test conditions. Six of the 61
mec-positive isolates (9.8%) fell in this category. Four of them
(6.5%) would have been consideredsusceptibletoboth
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TABLE 2. Characteristics of borderlineMRSA
Oxacillin spread MIC(s)(,ug/ml) under indicated incubation conditions
Strain" Presence of plateresults" Oxacillin Methicillin
penlicillinase
2pLg/ml 10 ,ug/ml 30(C,24 h 30°C, 48 h' 37°C, 24 h 37°C, 48 h 30°C, 24 h 30°C,48 h 37°C,24 h 37°C,48h
mecnegative
82 + - - 0.25 0.25, 0.125 0.5 0.5 4 4 4 4
84 + - - 0.5 2,2 0.125 0.125 1 1 1 1
103 + - - 0.5 2, 2 0.125 0.125 1 1 1 1
125 + - - 0.25 0.25, 0.25 0.25 0.25 4 4 2 4
128 + - - 0.5 1, 1 0.25 0.25 2 2 1 1
143 + - - 0.5 0.5,0.5 1 1 2 2 2 2
145 + - - 0.125 0.125, 0.25 1 1 1 1 1 1
154 + - - 0.5 0.5, 0.5 0.25 0.5 4 4 2 2
167 + - - 0.25 0.25,0.125 0.5 0.5 2 4 4 4
168 + - - 0.125 0.25,0.25 0.25 0.5 2 2 4 4
169 + - - 2 2,2 0.125 0.125 2 2 1 2
171 - - - 4 4,4 0.25 0.25 2 2 1 1
179 - - - 1 0.5,0.5 0.5 0.5 4 8 4 4
200 + - - I 1, 1 1 2 2 2 2 2
mecpositive
61 + + + 2 2, 2 2 2 0.25 0.5 4 4
66 + + - 1 2,0.5 0.125 0.125 1 2 2 2
68 + + - 0.5 0.5, 1 0.5 1 2 2 2 1
97 + + + 0.25 0.5, 0.5 0.5 0.5 16 32 16 16
112 + + + 0.25 0.5,0.5 4 4 16 16 16 16
183 + + + 0.25 0.25, 0.5 0.25 0.25 4 4 4 4
"iiec negative anditIecpositive,nohybridization and hybridization with the mec-specific probe, respectively.
hAfter 48 h of incubation at
37"C.
+,growth; -,absence of growth.First and second values were obtained without and with clavulanic acid (4 ,ug/ml),respectively.
cillin and oxacillin
according
totheirMICs. With theexception
of two
isolates,
allmec-positive
borderline resistant isolatesgrewon
plates containing
oxacillinatthehighest
concentration(10
,ug/ml)
in thespread
plate
test(Table 2).
Of the 77mec-negative
isolates,
14(18.2%)
had aborderline resistancetooxacillin
(9
of77,
i.e.,
11.6%) and/or
methicillin(6
of77,
i.e.,
7.8%),
butnonegrewontheplates containing
2p.g
ofoxacillinperml
(Table 2).
Clavulanicacid(4 ,ug/ml)
didnotsignificantly
reduce the MICs of oxacillin for these borderline-resistant
isolates,
andtwoofthemwerepenicillinase negative (Table 2).
TheMICs of
penicillin
Gfor these twopenicillinase-negative
strainswere0.05
.g/ml.
DISCUSSION
Because the choice of antimicrobial
therapy
and isolationprocedures
forpatients
withstaphylococcal
infectionsdependson the
susceptibility
of the isolates tomethicillin,
there is aneed for reliable methods for detection of methicillin
resis-tance.
However,
because oftheheterogeneous expression
ofresistance,
somemethicillin-resistant isolatesmaybemisiden-tifiedasmethicillin
susceptible
by
the conventional methodsof in vitrotesting.
Variousprocedures
have beenproposed
forimproving
the detection of methicillinresistance,
but there isno standardized
procedure
for the detection of methicillin resistance that hasbeenaccepted
worldwide(4,
6, 12, 19,20).Foragardilution and brothmicrodilution
testing,
the NCCLSrecommends the addition of2% NaCl, incubationat 35°Cfor
24 h and the use of either methicillin or oxacillin, although
oxacillin is
preferred
becauseof itsstabilityand thereproduc-ibility
of itstestresults(19,20).
Inaddition,forconfirmation ofresistance,
the NCCLS recommends an agar screen methodusing
6pLg
of oxacillin per ml in Mueller-Hinton platescontaining
4% NaCl andincubatedfor 24 hat35°C.InFrance,theComite Francais del'Antibiogrammesuggestsusing oxacil-lin instead of methiciloxacil-lin and either adding 5% NaCl to the medium and incubatingthe plates at 37°C for 18 h or using Mueller-Hinton medium and incubatingtheplatesat30°Cfor 18 h (5). In addition, there isno universal agreement on the
MIC breakpoints for defining methicillin resistance. Isolates
for which the MICs of oxacillin are higher than 2 ,ug/ml are
usuallyclassified asMRSA,while isolates for which the MICs
of methicillin arehigher than 2, 4,or 8 ,ug/mlareconsidered resistant(5, 8, 17, 19,20). These problems about the choice of
an optimal method for the detection of methicillin resistance
aredue to the absence ofareference procedure. Because of
the mec gene's invariable presence in MRSA, its detection
provides an accurate method for identification of MRSA,
independent of environmental conditions that may affect the
phenotypic expressionofresistance (1, 7, 11, 18, 21,24, 25).
As determinedbycomparison withDNAhybridization, the
spread plate method and agar dilution were accurate in
identifying methicillin-susceptibleS. aureus. The agar dilution
testhad apoorsensitivity for the detection of MRSAdespite
the use ofan increased inoculum (105 CFU) comparedwith the NCCLS recommendations (104 CFU). This is probably relatedtothe absence of NaCl inthetestmedium,since other authors obtained similar results using Mueller-Hinton agar without NaCl and noted a substantial improvement of
sensi-tivityin the presence ofNaCl(10, 11). AccordingtoHuang et
al., the best agreementbetween the NCCLS reference broth
testandagardilutionwasachieved when 2% NaClwasadded
to the medium, although this cannot be achieved without
sacrificing
specificity (10). For oxacillin, more mec-positiveisolatesweredetectedafter incubationat37thanat30°C; this
is unlikely to be a temperature effect since, as previously
reported, incubation at 30 instead of 37°C improved the
sensitivityof the agar dilution testfor methicillin (11, 12).
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The spread plate method was the most sensitive phenotypic method for the detection of MRSA, probably because it uses both a high salt content and a large inoculum. Gerberding et al. have previously noted that agar screening with oxacillin at 6 ,ug/ml lackedspecificity when a larger inoculum(107CFU) was used,especially when NaCl was added to the medium (9). In our study, the specificity of the spread plate test was better, despite the use of lower concentrations of oxacillin (2 ju.g/ml)
and of a greater inoculum(108 CFU), probably because we did notselect for troublesome isolates, while most strains tested by Gerberdingetal. expressedborderline resistance (9).
We found a borderline resistance to methicillin and/or oxacillin in 20 of 138 French S. aureus isolates (14.5%) from
patients with severe infections. mec-encoded resistance
ac-counted for this phenotype in 30% (6 of 20) of the isolates. Of
77mec-negative isolates,14(18%) had a borderline resistance
to oxacillin and/or methicillin, a quite high frequency that might be due in part to the large inoculum (105CFU)used for agar dilution. However, using an inoculum of 103 CFU, de Lencastre etal. found MICs of methicillin of -4pug/mlfor 5% (11 of 215) of recent methicillin-susceptible S. aureus isolates, compared with 8% (6 of 77) (P = 0.4) in our study (7). The spread plate test with oxacillin at 2 p.g/ml was useful in identifying the strains with mec-encoded resistance among isolates with ambiguous MICs. Four mec-negative isolates yielding oxacillin MICs of -2
[Lg/ml
with an inoculum of 105CFU did not grow on the agar screen plates with 2 pug of oxacillin per mldespite the useofalargerinoculum; thiswas
possiblyrelatedtotemperature,since the MICs ofoxacillinat
37°Cwere .0.25 ,ug/ml for all these isolates. Two of the 14
mec-negative isolates with aborderline level of resistance had
no detectable r-lactamase activity. Althoughwe did not look for the biochemical basis of resistance, it is likely that the borderline resistance phenotypewasalsoindependent of pen-icillinase production in the 12 other mec-negative isolates, since the addition of clavulanic acid didnotsignificantlyreduce the MICsofoxacillin. Thesefindingsare consistent with those of de Lencastreet al.,who havesuggested that, in additionto
the presence ofapenicillinase, many contemporaryisolates of S.aureushavealow-level intrinsic resistancetomethicillin that
ispossiblyrelatedtoaltered PBPs(7, 22).
Since the spreadplate method used in thisstudyidentified MRSA withasensitivityandaspecificityof
100%,
this method should be usedroutinelyfordetection of methicillin resistance. Determinations of methicillin and oxacillin MICs by agar dilution at 30 and 37°C, after 24 and 48 h of incubation onMueller-HintonplateswithoutNaCl,hadapoorsensitivityand gave ambiguous results for 14.5% of the isolates. Compared
with MIC determinations, the spread plate method with
ox-acillinat2 ,Lg/mlwasmuchmoreefficient for identification of mec-encoded resistance in isolates expressing a low level of resistance. Detection of the mec gene should be used as the procedure of referencewhenroutinesusceptibilitytesting gives
ambiguous results.
ACKNOWLEDGMENTS
We are grateful toJohn Kornblum for providingthe DNAprobe used in the presentstudy,to ourcolleaguesfrom theGrouped'Etude des Infections Severes a Staphylocoques for supplying the isolates included in thestudy,andtoHerveRichet forsuggestionsandhelpful
discussion.
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