16S rDNA Sequence
Molecular Typing of Papillomatous Digital Dermatitis Associated Treponema Isolates Based on Analysis of 16S 23S Ribosomal DNA Intergenic Spacer Regions
... ISR-based phylogeny of California PDD-associated Trepo- nema isolates. Phylogenetic analyses were performed with the ISR1 and ISR2 nucleotide sequences of the six California PDD-associated Treponema isolates and the four ...
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Degradation study of lindane by novel strains Kocuria sp. DAB-1Y and Staphylococcus sp. DAB-1W
... and 16S rDNA ...by 16S rDNA sequence of the two isolates using the standard 16S primers, the 16 S rRNA partial sequence was analyzed through BLAST analysis and ...
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First report of Wolbachia in Damaeus onustus (Acari: Oribatida)
... bacterial 16S rDNA sequence detected in ...the 16S rDNA sequences of Wolbachia identified in springtails (Collembola): Megalothorax minimus (accession ...Wolbachia sequence was ...
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Evaluation of Partial 16S Ribosomal DNA Sequencing for Identification of Nocardia Species by Using the MicroSeq 500 System with an Expanded Database
... Nocardia isolates that could not be definitively identified to the species level are probably unidentifiable because a large number of Nocardia species still await recognition as new spe- cies. We expect this percentage ...
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Sequence Based Identification ofMycobacterium Species Using the MicroSeq 500 16S rDNA Bacterial Identification System
... by 16S rDNA sequence avoids some of the problems associated with these ...The 16S rDNA sequence is relatively conserved, so there is little intraspecies variation, but in most ...
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Species Specific Identification of Campylobacters by Partial 16S rRNA Gene Sequencing
... strains. 16S rRNA gene (16S rDNA)-based identification of bacteria offers a possible alternative when phenotypic tests ...of 16S rDNA sequencing for the species-specific identification ...
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Application of 16S rRNA gene PCR to study bowel flora of preterm infants with and without necrotizing enterocolitis
... the 16S rRNA gene (rDNA). The 16S rDNA V3 region was amplified with eubacterial primers, and the amplification products derived from the fecal sample DNA were compared with the products from ...
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Comparison of Phenotypic and Genotypic Techniques for Identification of Unusual Aerobic Pathogenic Gram Negative Bacilli
... the 16S rDNA sequence derived from these 6 isolates, 11 Enterobacteriaceae stored in the Mi- croSeq database, and 8 Enterobacter species available in Gen- Bank (15, ...
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Misidentifying Helicobacters: theHelicobacter cinaedi Example
... above, from the perspective of species level identification, the reliability of using 16S rDNA sequence similarity levels be- tween 98.7 and 99.2% (35) is suspect, since intraspecies vari- ation ...
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9. Mamata Pasayat, Alaka Shamal and Amiya Kumar Patel
... through 16S rDNA sequence ...on 16S rDNA sequence homology suggested that the isolated bacterium exhibited closer resemblance with Ralstonia solanacearum ...(100% sequence ...
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Majority of Actinobacterial Strains Isolated from Kashmir Himalaya Soil Are Rich Source of Antimicrobials and Industrially Important Biomolecules
... The present study overviews the community analysis of potent actinomycetes to survey its antimicrobial biosynthesis potential. Various actinomycetes are iso- lated from unexplored sites of Rangreth, Kashmir Himalayas, ...
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Comparing 16S rDNA amplicon sequencing and hybridization capture for pea aphid microbiota diversity analysis
... 16S rRNA gene capture was carried out as described by Denonfoux et al. [7]. Libraries were prepared using Roche GS FLX Rapid Library Preparation Kit (Roche Applied Science) according to the manufacturer’s ...
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Molecular Study of a New Disease of Peach in Iran Associated with a Phytoplasma
... phytoplasmas 16S rRNA gene (about 1240 ...of 16S rRNA gene from peach phytoplasma isolate 6, 29 repre- sentative phytoplasmas, Acholeplasma laidlawii (Figure ...
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Molecular identification of clinical “difficult-to-identify” microbes from sequencing 16S ribosomal DNA and internal transcribed spacer 2
... of sequence analysis is excellent, as it enables the identification of “difficult- to-identify” bacterial ...of 16S rDNA can serve as a supplement in regular clinical work for bacteria ...
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Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products
... Regarding the bibliography, we pointed out that this unappropriated Muyzer-Primer1 was still used in recent studies to describe food products, a situation that is somewhat problematic since these products may contain ...
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‘Candidatus Aquirickettsiella gammari’ (Gammaproteobacteria: Legionellales: Coxiellaceae): A bacterial pathogen of the freshwater crustacean Gammarus fossarum (Malacostraca: Amphipoda)
... Genome sequence data of novel species must show close relatedness through the phylogenetic methods used by this study, and gene conservation relative to the type ...
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16S rDNA Identification and molecular characterization of xanthomonadaceae nml 03 0222 bacterial isolates from agricultural soil of jharkhand
... findings of (Schaad and White., 1974) and (Soudi, et. al., 2006). Similar results were obtained by (Gomes, et. al., 2003) for morphological characterization of Xanthomonas colonies. Further biochemical characteristics ...
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Obersteiner, Andrea (2017): Pollen associated microbiome and its relationship to pollution and allergens. Dissertation, LMU München: Fakultät für Biologie
... Beginning with cultivation-dependent approaches, the colonization of allergenic pollen was demonstrated by identification of bacterial and fungal species isolated from birch and timothy grass pollen. Next, ...
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ISOLATION AND MOLECULAR IDENTIFICATION OF AQUATIC BACTERIA FROM TIGRIS RIVER WITHIN WASIT PROVINCE
... of 16S rDNA gene for each bacterial isolate and alignment these sequences with the same genes in ...of 16S rDNA genes using universal ...
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Ehrlichia chaffeensis, a new species associated with human ehrlichiosis
... Using universal primers that are conserved among eubacterial 16S rRNA genes, we were able to amplify, clone, and sequence 16S rDNA from all five currently recognized species of ehrlichia[r] ...
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