and Pymol
Ligand docking and binding site analysis with pymol and autodock in elimination of lymphatic filariasis
... PYMOL act as an important bioinformatic tool allowing to perform docking studies using autodock against drug discovery for lymphatic filariasis.The plugin covers all functionalities for the entire wtrorkflow of a ...
7
iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach
... into PyMOL as a wizard plugin, and all iPBA functionalities are totally integrated into the graphic interface of ...current PyMOL internal ...in PyMOL it- self, as a Tkinter ...3D PyMOL ...
5
Ligand-based virtual screening interface between PyMOL and LiSiCA
... In the field of molecular interactions, several exten- sively used plugins for PyMOL were developed. The Autodock Vina plugin [5] covers all functionalities of an entire molecular docking workflow, including ...
5
MtsslWizard : in silico spin labelling and generation of distance distributions in PyMOL
... Abstract MtsslWizard is a computer program, which operates as a plugin for the PyMOL molecular graphics system. MtsslWizard estimates distances between spin labels on proteins quickly with user-configurable ...
15
Molecular Docking Studies of anti-HIV drug BMS- 488043 derivatives using HEX and GP120 Interaction Analysis using Pymol
... This further inhibiting the GP41 interaction BMS-488043 works by binding to the HIV-1 envelope with the target cell membrane and prevents the HIV infection glycoprotein GP120, thereby in[r] ...
7
Soluble Structure of CLIC and S100 Proteins Investigated by Atomic Force Microscopy
... Panel a AFM error mode of S100A8 protein spots at low resolution; b AFM error mode of a single S100A8 protein spot; c AFM height mode image in 3D of S100A8 proteins; d PyMOL generated ri[r] ...
10
A novel thermostable chitinolytic machinery of Streptomyces sp. F-3 consisting of chitinases with different action modes
... Since different hydrolyzing actions were observed among the GH18 chitinases, the PyMOL molecular visualiza- tion system (https ://pymol .org/) was used to build mod- els of the catalytic domains of ...
12
IVSPlat 1.0: an integrated virtual screening platform with a molecular graphical interface
... In this study, we developed an integrated virtual screening platform, IVSPlat 1.0, which is an easily oper- ated PyMOL [21] plug-in that performs many practical virtual screening tasks derived from UCSF Dock 6.5 ...
10
Molecular docking between the RNA polymerase of the Moniliophthora perniciosa mitochondrial plasmid and Rifampicin produces a highly stable complex
... Background: Moniliophthora perniciosa (Stahel) Aime & Phillips-Mora is the causal agent of witches ’ broom disease (WBD) in cacao (Theobroma cacao). When the mitochondrial genome of this fungus had been completely ...
10
Virtual screening for identification of novel potent EGFR inhibitors through Autodock Vina molecular modeling software
... by pymol visualiser and studied at the binding site of the EGFR receptor (1m17) and depicted in figure 6 (Overlay ligand 5 and erlotinib); figure 7 (binding interaction of ligand 5 with binding site of 1m17 ...
8
In vitro anti microbial potential of Bacopa monnieri and in silico OMPX inhibitory activity of its active components
... The need for investigating the protective effects of herbal extracts and compounds from natural sources has gained considerable attention among researchers. Current study was aimed at investigating the in vitro ...
7
Seed yield and yield components of vetch species and their accessions under nitosol and vertisol conditions in the central highlands of Ethiopia
... Vicia narbonensis had the highest pod length per plant 5.4 cm and thousand seed weight 222.8 g and the lowest grain sink filling rate 7.2 kg ha-1 day-1, number of pods per plant 7.6 and [r] ...
10
Population and development in jammu and kashmir with comparison to india: emerging issues and challenges for women
... Table 10 and 11 shows that Jammu and Kashmirhas better infant mortality and total fertility rates than India but Table12 shows that sex ratio of Jammu and Kashmir is very low than India [r] ...
9
Characterisation and evaluation of pulp and paper from sudanese wood species for pulp and paper making
... The physical properties of handmade paper sheets produced from kraft and soda-AQ pulps of the studied species are listed in Table 4.. The paper sheets produced from Z.[r] ...
9
Characteristics of reversible and nonreversible COPD and asthma and COPD overlap syndrome patients: an analysis of salbutamol Easyhaler data
... Abbreviations: aCOs, asthma and COPD overlap syndrome; COPD, chronic obstructive pulmonary disease; FeV 1 , forced expiratory volume in 1 second; FVC, forced vital capacity; Post, post[r] ...
9
Trends, growth rate scenario and instability in area, production and productivity of mango fruit in punjab and sindh provinces of Pakistan
... Full Length Research Article TRENDS, GROWTH RATE SCENARIO AND INSTABILITY IN AREA, PRODUCTION AND PRODUCTIVITY OF MANGO FRUIT IN PUNJAB AND SINDH PROVINCES OF PAKISTAN *Dr.. Mohammad Per[r] ...
7
Influence of putrescine and indole 3 butyric acid on chemical and biochemical parameters and yield of soybean
... At 60 and 75 DAS significantly maximum leaf phosphorus content was recorded in treatment T4 100 ppm putrescine followed by the treatments T9 100 ppm IBA, T3 75 ppm putrescine and T8 75 p[r] ...
8
Effect of malting in proximate, total and avilable iron content of millets and soybean flours and ready mixes
... In this view the present study was carried out with the following objectives: • Preparation of malted flours from wheat, sorghum, maize and soybean • Estimation of proximate imate compos[r] ...
6
Growth and trends in area, production and productivity of Sorghum and Bajra crops in Middle Gujarat zone
... The growth in the area, production and productivity of sorghum and bajra crops in middle Gujarat zone was estimated using different linear, nonlinear and time series ARIMA models.. The c[r] ...
5
Germination of weeds and species grown and submitted to the growing of sunn hemp and its extract
... Looking at the data on corn root, rice and bean growth submitted to sunn hemp extract it can be confirmed that the sunn hemp interferes significantly in the development of the roots in t[r] ...
8