Bacterial strains and genomes
Discovering Complete Quasispecies in Bacterial Genomes
... ABSTRACT Mobile genetic elements can be found in almost all genomes. Possibly the most common nonautonomous mobile genetic elements in bacteria are repetitive extragenic palindromic doublets forming hairpins ...
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Bioinformatics tools for the analysis of plant-associated bacterial genomes
... However, bacterial strains that has not been incorporated into RAST database are reported with no subsystems, and users need to manually inspect individual features to infer the existence of secretion ...
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A Protein Similarity Approach For Detecting Prophage Regions In Bacterial Genomes
... from bacterial pathogens are phage encoded [1,2,3] for example, the food poisoning botulinus toxin and Vibrio ...nonpathogenic bacterial strains to their ecological niche might also be mediated by ...
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Looking Backward To Move Forward: the Utility of Sequencing Historical Bacterial Genomes
... Investigations utilizing individual isolates, however, may not give a full representa- tion of pathogen evolution due to the focus on a single isolate. It is possible that there may be vital elements that would be over- ...
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Draft genomes of “Pectobacterium peruviense” strains isolated from fresh water in France
... Additional files Additional file 1: FigureS1. Symptoms observed on potato tubers. Overnight cultures of bacterial strains A97-S13-F16 and A350-S18-N16 were suspended in 50 mM phosphate buffer pH 6.8 and ...
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
... type strains covered in this ...these genomes to better understand plant dis- eases, the transfer of nutrients to and from the plant in the rhizosphere, and plant symbioses with N 2 -fixing and other ...
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CiteSeerX — MINIREVIEW Physical Mapping of Bacterial Genomes
... Indirect evidence of a stable three-dimensional structure of the Salmonella chromosome resulted from a study of the dis- tribution of the ends of rearrangements induced by Tn10 (76). This transposon induced inversions ...
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The source of laterally transferred genes in bacterial genomes
... comm en t re v ie w s re ports refer e e d re sear chdeposited research interacti o ns inf o rmation [36], and S. pyogenes [12]. We considered as unambiguous the relationships between these bacteria because, for exam- ...
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Two-dimensional DNA displays for comparisons of bacterial genomes
... With sequence information available for a single representative bacterium, a DNA microarray can be produced and used to compare that organism to a number of related bacteria. This approach was first used by Behr et al. ...
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Insertion sequence elements-mediated structural variations in bacterial genomes
... in bacterial genomes and play a crucial role in mediating large-scale variations in bacterial ...eight strains of five bacterial species containing IS elements, including four ...
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Thousands of missed genes found in bacterial genomes and their analysis with COMBREX
... prokaryotic genomes, even for different strains of the same species, unless the anno- tation was all performed at the same sequencing center and within a relatively short time ...some strains and ...
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Evaluating genome dynamics: the constraints on rearrangements within bacterial genomes
... The two most important experimental techniques for com- parative analysis of genome organization have been whole- genome sequencing and physical mapping of genome organization. Whole-genome sequencing provides complete ...
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Periodic Variation of Mutation Rates in Bacterial Genomes Associated with Replication Timing
... This replication timing program in bacteria with multiple circular chromosomes enabled a test of whether secondary chromosomes experience similar mutation rates and regional variation to concurrently late-replicated ...
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Evolutionary conservation analysis between the essential and nonessential genes in bacterial genomes
... 23 bacterial organisms, whose essential and non- essential genes are available in DEG ...homologous strains are precisely the same with the protein sequences in the original organism, so that the ratios of ...
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Profile of Eight Prophage Sequences Present in the Genomes of Different Acinetobacter baumannii Strains
... ABSTRACT Background and Objective: Prophage sequences are major contributors to interstrain variations within the same bacterial species. Acinetobacter baumannii is a gram- negative bacterium that causes a wide ...
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The evolution of domain-content in bacterial genomes
... As our results have made plausible that the evolutionary potentials ρ c (and the corresponding scaling exponents α c ) are fundamental constants of the evolutionary process that apply across all time and all evolutionary ...
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CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes
... other genomes as well; however a compen- sation in the number of PCR primers generated by Pro- jector2 (an average of 52 more PCR pairs) was observed, which could be due to the fact that both ABACAS and ...
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Deletions in the genomes of pseudorabies virus vaccine strains and existence of four isomers of the genomes.
... The hybridization patterns of the BamnHI fragments to Kpnl digests of PRV(Ka) and the Bartha strain are very similar (see map in Fig. 6) except that KpnI fragment I, which hybridizes to [r] ...
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Draft genomes of Shigella strains used by the STOPENTERICS consortium
... of strains between labora- tories, and create a public resource for vaccine develop- ment and further Shigella research, we whole genome sequenced the Shigella strains used by the STOPENTER- ICS consortium ...
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Studies on DDT degradation by bacterial strains
... Studies On DDT Degradation By Bacterial Strains Synopsis Dichlorodiphenyltrichloroethane (DDT) is the first synthetic compound used against pests. Though it was first synthesised by Zeidler, the noble prize ...
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