base pair
Association of HLA-G 14-base pair insertion/deletion polymorphism with breast cancer in Saudi Arabia
... 14-base pair (bp) insertion/deletion (indel) polymorphism (rs16375) in exon 8 of the 3′ untranslated region (3′ UTR) of the HLA-G gene has been reported to influence HLA-G protein ...
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The Symmetrical Wave Pattern of Base Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes
... of base-pair sub- stitutions (BPSs) is not constant across the chromosome but varies in a wave-like pattern that is symmetrical about the origin of ...
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Asymmetric base pair opening drives helicase unwinding dynamics
... chronous base-pair opening had never been tested in the context of helicase unwinding, and systematic studies were lacking on how the nucleic acid sequence could affect the base-pair inter- ...
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High Apparent Rate of Simultaneous Compensatory Base-Pair Substitutions in Ribosomal RNA
... the base pair to the rate of substitution to and from the G-U transitional intermedi- ...a base pair is allowed to occur approximately as often as substitution of individual ...
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Structure of the acceptor stem of Escherichia coli tRNA(Ala): Role of the G3·U70 base pair in synthetase recognition
... G·U base pair is recognized primarily through its unique conformational features (‘indirect ...G3·U70 pair in tRNA Ala can be substituted in vivo with other non-Watson–Crick base pairs without ...
8
DFT Study on Reaction Mechanism of DNA Base Pair with Hydroxyl Radical
... G-C base pair was investigated by DFT calculations [13, ...adenine base [15] and A-T base pair ...A-T base pairs induced by the • ...
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[(1 Methylcytosine)2H]I, an asymmetric base pair
... (KruÈger et al., 2004). Concomitant DFT calculations suggest the formation of an asymmetric base pair, however. We report here the crystal structure of this compound in a different crystal con®guration, ...
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Under what conditions does G•C watson-crick DNA base pair acquire all four configurations characteristic for A•T watson-crick DNA base pair?
... DNA base pair formed by the mutagenic tautomers can ac- quire, as the A⋅T Watson-Crick DNA base pair, four biologically important configurations, name- ly: Watson-Crick, reverse Watson-Crick, ...
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Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform
... Intraindividual distance-based bacterial community comparisons of vaginal samples. Samples successfully amplified using both library preparation methods were used for comparative analyses. The 1-step libraries were ...
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Human cytomegalovirus ie1 transactivates the alpha promoter-enhancer via an 18-base-pair repeat element.
... The target for human CMV iel transactivation, the 18-bp repeat element, has limited similarity to a core enhancer element from SV40 and is very similar to the NKKB transcription factor-b[r] ...
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Influence of base pair mismatch location on the binding efficiency of nucleotide strands
... one base of the AON-sequence per sample and varying the position of this base ...altered base, thus the set of AON/Exon 2 complexes is mismatched on 20 positions in ...exact base changes can ...
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Deletion of a 9,000-base-pair segment of the vaccinia virus genome that encodes nonessential polypeptides.
... To confirm the XhoI and SstI restriction endonuclease maps for our WR isolate, cloned HindIII fragments D, E, F, G, H, I, J, K, L, M, N, and 0 Belle Isle et al., in press, agarose gel-pu[r] ...
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Simian virus 40 mutants carrying extensive deletions in the 72-base-pair repeat region.
... 9a allow us to conclude that the deletions in the upstream region of the principal late SV40 initiation site L325, including the 72-bp repeat segment, do not interfere appreciably with t[r] ...
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Seven-base-pair inverted repeats in DNA form stable hairpins in vivo in Saccharomyces cerevisiae.
... Since the level of PMS is related to the secondary structure of the insertion (NAG, WHITE and PETES 1989), this result indicates that base-pairing for a 7-bp, but not a 6-bp, [r] ...
5
Novel 180 and 480 Base Pair Insertions in African and African American Strains of Helicobacter pylori
... As noted above, 4 of 20 South African strains (each of an unusual outlier group) carried a 0.5-kb insertion between FIG. 1. ins180 contains a highly repetitive element. A 99-bp subsequence of ins180 is shown. This ...
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Some Features of Base Pair Mismatch and Heterology Repair in Escherichia coli
... T h e absence of this repair system in mutH, mutL, mutS and uvrD strains would account for the abundance of infective centers harboring phage with alleles from both parents[r] ...
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Determination of the rate of base-pair substitution and insertion mutations in retrovirus replication.
... performed this amplification on DNAs from seven neor D17 cell clones originally infected with JD216Neo AmHy virus from .2G helper cell clones and on six DNAs from cells originally infect[r] ...
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Role of Initiating Nucleoside Triphosphate Concentrations in the Regulation of Influenza Virus Replication and Transcription
... 3-8GC3CG base pair substitution in the promoter should be insensitive to the con- centration of CTP relative to replication of the wild-type NA gene, as the first C residue incorporated during replication ...
10
Asymptotic structural properties of quasi-random saturated structures of RNA
... the base pair (1, u) by choosing u, where θ + 2 ≤ u ≤ n, at random with probability 1/(n − θ − ...The base pair joining 1 and u partitions the line into two ...always base pair ...
9
Genomic analyses with biofilter 2.0: knowledge driven filtering, annotation, and model development
... and base pair locations), or a list of regions (such as genes), and these are first mapped to known protein-coding gene regions by ...one base-pair of overlap as mapped to a given ...
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