Biomedical ontologies
BioBroker: Knowledge Discovery Framework for Heterogeneous Biomedical Ontologies and Data
... of ontologies have been introduced by the biomedical com- munity in recent ...multiple ontologies. However, due to the exponential growth of biomedical big data and their complicated ...
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Scalable representations of diseases in biomedical ontologies
... formal ontologies is to promote an unambiguous and commonly agreed typology for categorizing the entities of the domain to be repre- sented, the representation of diseases in biomedical ontologies is ...
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Local matching learning of large scale biomedical ontologies
... large ontologies like NCI and SNOMED respectively contain 137,328 and 327,128 ...SNOMED ontologies, which produces a set of 137,328327,128 pairwise ...large ontologies is a complex ...Large ...
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Matching biomedical ontologies based on formal concept analysis
... To conclude, the study in this paper attempts to push the envelope of the Formal Concept Analysis formalism in ontology matching tasks. In our system FCA-Map, five types of formal contexts are constructed in an ...
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Thematic series on biomedical ontologies in JBMS: challenges and new directions
... be expressed (such as whether the ontology may contain contradictions) and determines the complexity of gen- eral tasks such as querying the ontology and categorizing data with the ontology. OWL 2 comprises three emerg- ...
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Building a Spanish MMTx by using Automatic Translation and Biomedical Ontologies
... domain ontologies is becoming increasingly popular in Medical Natural Language Processing ...of biomedical concepts to cross-lingual text classification, what makes it necessary to have a Spanish MMTx ...
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Bootstrapping Biomedical Ontologies for Scientific Text using NELL
... many biomedical predi- cates, and these are relatively small scale (Wattaru- jeekrit et ...isting biomedical ontologies, including a wide range of sub-domains and many ...large-scale ...
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Enrichment of French Biomedical Ontologies with UMLS Concepts and Semantic Types for Biomedical Named Entity Recognition Though Ontological Semantic Annotation
... French Biomedical Data Resources (SIFR) project, we have developed the SIFR BioPortal ...French biomedical ontologies and terminologies based on the technology developed by the US National Center for ...
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Grains, components and mixtures in biomedical ontologies
... In biomedical ontologies, mereological relations between parts and wholes [1] have always been conferred a special importance due to their relevance for describing the structural makeup of material entities ...
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Using linked data for integrating educational medical web databases based on bioMedical ontologies
... Open data are playing a vital role in different communities, including governments, businesses, and education. This revolution has had a high impact on the education field. Recently, Linked Data are being adopted for ...
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Improving the interoperability of biomedical ontologies with compound alignments
... Biomedical ontologies are crucial to support the manage- ment and analysis of life sciences ...between ontologies covering the same or closely related ...in biomedical ontologies, to ...
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Tackling the challenges of matching biomedical ontologies
... of biomedical ontologies when matching them, that complexity can also be exploited to generate new ...large ontologies suggests that the algorithm may not be sufficiently mature, but we expect that ...
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Putting biomedical ontologies to work
... Objectives: Biomedical ontologies exist to serve integration of clinical and experimental data, and it is critical to their success that they be put to widespread use in the annotation of ...can ...
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FEDRR: fast, exhaustive detection of redundant hierarchical relations for quality improvement of large biomedical ontologies
... of biomedical ontologies, and identified six sources containing redundant is-a ...generated ontologies have also been used to further validate the efficiency of ...
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An Approach for the Alignment of Biomedical Ontologies based on Foundational Ontologies
... of ontologies to maintain a uniform vocabulary and to support interoperability of different information ...other ontologies, along with GO, could enrich the vocabulary used in the annotation, complementing ...
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Embedding Biomedical Ontologies by Jointly Encoding Network Structure and Textual Node Descriptors
... GRAM model (Mikolov et al., 2013) is then used to learn node embeddings that successfully pre- dict the nodes in each walk, from the node at the beginning of the walk. To enrich the node em- beddings with information ...
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OVA: Integrating molecular and physical phenotype data from multiple biomedical domain ontologies with variant filtering for enhanced variant prioritization
... Open Biomedical Ontologies Foundry project (Smith et ...multiple ontologies to facilitate computational analysis of natural language ...Foundry ontologies, and naturally a number of methods ...
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Searching Ontologies Based on Content: Experiments in the Biomedical Domain
... general, ontologies in biomedicine were first developed to name things; this trend is reflected in the large number of relevant on- tologies that cover aspect of body parts, parts of plants, worms and mice ...
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Interpretations of Ontologies for Breast Cancer
... that ontologies intended to support medical practice can only be understood within the context of their intended ...of biomedical knowledge is always in a state of flux, and different institutions and ...
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