complete genome sequences
The complete genome sequences of sulfur-oxidizing Gammaproteobacteria Sulfurifustis variabilis skN76T and Sulfuricaulis limicola HA5T
... on complete genome sequences of bacteria belonging to the order Acidiferrobacterales ...The genome analysis of Sulfurifustis variabillis skN76 T and Sulfuricaulis limicola HA5 T revealed that ...
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Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria
... bacterial genome sequencing projects are revealing the presence of phages which can integrate their DNA into the genome of their host to form stable, lysogenic associations, little is known of the genetics ...
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Western Equine Encephalitis Virus: Evolutionary Analysis of a Declining Alphavirus Based on Complete Genome Sequences
... Western equine encephalitis virus (WEEV) has caused several epidemics that resulted in the deaths of thousands of humans and hundreds of thousands of equids during the past century. During recent decades, human infection ...
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Global Genomic Diversity of Human Papillomavirus 11 Based on 433 Isolates and 78 Complete Genome Sequences
... E5a-E5b-L1-URR sequences re- sembled the topology of the tree constructed from the complete HPV11 ...of complete genome sequencing for the basis of HPV variant classification (42, ...HPV ...
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Complete genome sequences of Aeromonas and Pseudomonas phages as a supportive tool for development of antibacterial treatment in aquaculture
... genomic sequences represent a small fraction in public ...NCBI genome database [National Center for Biotechnology Informa- tion (NCBI) Genome database ...are genome sequences of phages ...
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Complete genome sequences of Geobacillus sp. WCH70, a thermophilic strain isolated from wood compost
... The genome of Geobacillus sp. WCH70 was sequenced at the JGI using a combination of Sanger and 454 technolo- gies [21]. Two Sanger libraries with average insert size of 8 Kb and 40 Kb (fosmid) were generated for ...
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Complete Genome Sequences of Cluster A Mycobacteriophages BobSwaget, Fred313, KADY, Lokk, MyraDee, Stagni, and StepMih
... All of the genomes are related to Cluster A mycobacteriophages, BobSwaget and Lokk in Subcluster A2, Fred313, KADY, Stagni and StepMih in Subcluster A3, and MyraDee is the first Subclus[r] ...
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Global Genomic Diversity of Human Papillomavirus 6 Based on 724 Isolates and 190 Complete Genome Sequences
... the genome of the prototype HPV6b isolate (PaVE ID HPV6REF), linearized at the first ATG of the E6 ORF, are displayed across lineages (A and B), sublineages (B1, B2, B3, B4, and B5), and intersublineages (B1/2/4, ...
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Comparative Analysis of Complete Genome Sequences of Three Avian Coronaviruses Reveals a Novel Group 3c Coronavirus
... Complete genome sequencing. Four complete genomes of BuCoV HKU11, ThCoV HKU12, and MuCoV HKU13 were amplified and sequenced, using the RNA extracted from the original swab specimens as ...with ...
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Complete genome sequences of Clostridium perfringens Del1 strain isolated from chickens affected by necrotic enteritis
... By screening the genome and plasmid sequences against the GenBank library, we identified 6 antibi- otic-resistance genes/clusters in CP Del1 genomes and plasmids. Specially these genes conferred resist- ...
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Complete Genome Sequences of Elephant Endotheliotropic Herpesviruses 1A and 1B Determined Directly from Fatal Cases
... the sequences of these ORFs were repaired conceptually by making minimal adjustments, which, of course, are not included in the GenBank ...other sequences (EE40 and EE57 in EEHV1B), contain an in-frame stop ...
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High Rates of Infection with Novel Enterovirus Variants in Wild Populations of Mandrills and Other Old World Monkey Species
... monkey-derived sequences obtained in the cur- rent study with all available sequences from VP1, VP4, 3Dpol, 5=UTR, and 3=UTR sequences of variants previously reported for other nonhuman ...from ...
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Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia
... C sequences identify several novel lineages belonging to haplogroup C7a (branches 2–12, Figure S8 in Online Resource 2), of which five have internal divergences and were hence used for coalescence time estimates ...
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Novel avian paramyxovirus isolated from gulls in Caspian seashore in Kazakhstan.
... whole genome sequences indicated the three isolates were genetically identi- cal, and had a nucleotide structure typical for all APMVs, consisting of six genes 3’-NP-P-M- ...nucleotide sequences of ...
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The State of Standards in Genomic Sciences
... Short Genome Report format was well suited for the project, as it would allow comparison of descriptive information about the genomes and the source ...Short Genome Report was published in ...
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Complete Genome and Clinicopathological Characterization of a Virulent Newcastle Disease Virus Isolate from South America
... FIG 2 Phylogenetic analysis based on the complete genome sequence of 104 taxa available in GenBank. The evolutionary history was inferred using the neighbor-joining method (24). The optimal tree with the ...
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Acquisition of viral DNA sequences in target organs of chickens infected with avian myeloblastosis virus.
... To determine whether the increase in AMV DNA content represented the acquisition of new complete DNA copies of the AMV genome or amplification of preexisting endogenous sequences, H-labe[r] ...
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Recent Transmission of a Novel Alphacoronavirus, Bat Coronavirus HKU10, from Leschenault's Rousettes to Pomona Leaf-Nosed Bats: First Evidence of Interspecies Transmission of Coronavirus between Bats of Different Suborders
... viral sequences formed a separate cluster distinct from known CoVs upon phylogenetic analysis, with ⬍82% nucleotide identities to the corresponding sequences of Rh-BatCoV A977 (GenBank ac- cession ...
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Novel Endogenous Type C Retrovirus in Baboons: Complete Sequence, Providing Evidence for Baboon Endogenous Virusgag-pol Ancestry
... best-characterized complete endogenous retroviruses of pri- ...the genome of only a limited set of African monkeys, including baboons, geladas, mangabeys, mandrills, and African green ...baboon ...
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Plastid genome and composition analysis of two medical ferns: Dryopteris crassirhizoma Nakai and Osmunda japonica Thunb.
... of complete plastid genome sequences ...plastid genome from different species have been ...plastid genome gene content and orientation are considerably conserved between species [10]; ...
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