Databases, Protein
Identification of Protein Isoforms in Mass Spectrometry Based Proteomic Analyses Using Alternative Splicing Databases.
... for protein identification and ...spectra. Protein identifications are inferred by grouping the peptide-spectrum ...on protein databases to provide candidates for ...multiple protein ...
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A Brief Overview of a Few Popular and Important Protein Databases
... a protein sequence ...The protein sequences have been derived from genome sequencing ...PIR protein da- tabases are combined to form the Universal Protein Re- source ...of protein ...
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mPies: a novel metaproteomics tool for the creation of relevant protein databases and automatized protein annotation
... create databases (DBs) for protein search using amplicon/ metagenomic and/or public repositories data: (i) non- assembled metagenome-derived DB, (ii) assembled metagenome-derived DB, (iii) taxonomy-derived ...
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Evaluating deterministic motif significance measures in protein databases
... simulates the sequences or part of the sequences under consideration. When an input sequence is provided, a probability of being matched by the motif is yielded. Posi- tion Weight Matrices (PWM) and Hidden Markov Models ...
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Protein-protein interaction databases: keeping up with growing interactomes
... PPI databases provides an exhaustive ...provide protein interaction data extracted and integrated from other ...Agile Protein Interaction Database ...six databases described above, mapping all ...
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Using random forests for assistance in the curation of G-protein coupled receptor databases
... Different sub-families have been shown to display very different discrimination con- sistency behaviors. Specific attention has been paid to the individual identification of Class C GPCR sequences that were consistently ...
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Improving classification in protein structure databases using text mining
... Finally, we demonstrated the practical application of a text based classifier in protein structure database curation. The model resulting from its combination with the struc- tural classifier is superior to the ...
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Tools and resources for identifying protein families, domains and motifs
... the databases mentioned here have interactions and exchange ...four databases (described below). All of the diagnostic protein signature databases have their strengths and weak- nesses and are ...
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Abstract
... ity is calculated for every changeover at each posi− tion in the alignment. Substitutions with a proba− bility less than a cutoff (0.05 by default) are pre− dicted as deleterious, while those equal to or greater than the ...
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Widespread Horizontal Gene Transfer from Double-Stranded RNA Viruses to Eukaryotic Nuclear Genomes
... genome databases for various organisms showed that the capsid protein and RNA-depen- dent RNA polymerase genes from totiviruses and partitiviruses have widespread homologs in the nuclear genomes of ...
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Review Article The role of hsp70-2 rs1061581 polymorphism and CAD risk: a meta-analysis
... Abstract: Background: Recently, many studies reported the association between Hsp70-2 rs1061581 polymor- phism and coronary artery disease (CAD) risk. However, the results were controversial. Therefore, we performed this ...
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Systematic analysis of protein interaction network associated with azoospermia
... OMIM databases, and in order to construct the PPI network, the protein-protein interactions of the collected proteins have been identified using the Human Protein Reference ...built ...
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CHARACTERIZATION OF ENDOGLIN GENE USING IN SILICO TOOLS
... of protein sequence was predicted using GOR IV and ...sub databases of protein sequences with known secondary structures; each of the proteins in a sub database is then subjected to secondary ...
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The interactome: Predicting the protein-protein interactions in cells
... of protein-protein ...a protein and its biological context or physico-chemical ...more protein sequences and their three-dimensional structures are known, giving rise to large publicly ...
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The Viral MetaGenome Annotation Pipeline (VMGAP): An automated tool for the functional annotation of viral Metagenomic shotgun sequencing data
... specialized databases and tools focused on particular groups of organisms or data ...specialized databases, such as collections of mobile genetic elements and environmental metagenomes to improve the ...
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Identification of Inference Genes in Breast Cancer Network
... as databases and published papers, and found that among 19 out of 31 (after removing repetitions) inferred genes 14 genes are cancer-associated (but not breast cancer), which suggests that these four centralities ...
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A Comparison between Characteristics of NoSQL Databases and Traditional Databases
... NoSQL databases, the question arises if they have all characteristics of databases and can they be a real alternative to the relational databases in all application ...traditional databases ...
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ECHO News 1991 No. 2
... The main menu will contain the following options: D User guidance databases D Research and development D D D D D D databases Language industry databases Industry and economy databases Ge[r] ...
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A Review on Various Frequent Itemsets Mining Algorithms
... text databases. The characteristics of text databases are quite different from those of retail transaction databases, and existing mining algorithms cannot handle text databases efficiently ...
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NOSQL Databases
... Typically dynamic, with some enforcing data validation rules. Applications can add new fields on the fly, and unlike SQL table rows, dissimilar data can be stored together as necessary. For some databases (e.g., ...
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