fold recognition
Protein Fold Recognition Algorithms-A General Survey
... The paper comprises the survey results in the developing area of protein folding that proffers many computational and mathematical problems. Further, the analysis have been done regarding various methods and techniques ...
12
Fast Nonnegative Matrix Factorization and Its Application for Protein Fold Recognition
... same fold arise from the physical and chemical properties favoring certain arrange- ments and topologies, meaning that various physicochemical features such as fold compactness or hydrophobicity are uti- ...
8
Protein Remote Homology Detection and Fold Recognition based on Features Extracted from Frequency Profiles
... the fold recognition, our methods are comparable with SVM-LA, Gpkernel and show better performance than the other compared ...and fold recognition ...
8
Two-layer SVM classifier for remote protein homology detection and fold recognition
... In order to solve the remote protein homology detection and fold recognition problems, two factors need to be considered. First, the holistic detection multi-layer classification should be able to detect ...
39
A Deeply Glimpse into Protein Fold Recognition
... folding recognition model. There are two aspects of protein fold recognition problem: first is the computational difficulty and second is that the current energy functions are still not accurate ...
10
Fold Recognition of the Human Immunodeficiency Virus Type 1 V3 Loop and Flexibility of Its Crown Structure During the Course of Adaptation to a Host
... Taking into account the uncertainty of the loop structure, we predicted the structural flexibility, diversity, and sequence fitness to the V3-loop structure for each of the sequences ser[r] ...
12
Multi-class Protein Classification Using Adaptive Codes
... Predicting a protein’s structural class from its amino acid sequence is a fundamental problem in computational biology. Recent machine learning work in this domain has focused on develop- ing new input space ...
25
Computational analysis of protein sequence and structure
... modelling, fold recognition, ab initio prediction and docking have been undertaken at two international meetings under the title of Critical A s sessment of Structure Prediction at Asilomar in California, ...
199
A knowledge-based approach to protein structure prediction
... Protein Fold Prediction) outperforms other available methods of protein fold recognition and, therefore, can be used for assignment of 3D folds to the proteins discovered in various genomes and hence ...
6
Computational recognition and analysis of hitherto uncharacterized nucleotide cyclase-like proteins in bacteria
... 3-D fold of these proteins as recognized by fold recognition methods indicating clear evolutionary relationship with nucleotidyl cyclases, together with presence of conserved metal-binding ...
12
Experimental continuation of periodic orbits through a fold
... We present a continuation method that enables one to track or continue branches of periodic orbits directly in an experiment when a parameter is changed. A control-based setup in combination with Newton iterations ...
5
Origami fold states: concept and design tool
... of fold states in origami-based design stems from the fact that fold states of a type share properties and behav- iors characteristic of that ...the fold state of a device determine, in part, how ...
15
1 Shannon entropy of epithelium and five-fold
... Entropy of discrete variables and statistical distributions of internal partitioning in shapes 𝛤. 170[r] ...
14
Terpene Synthases: One Fold, Many Products
... substrate farnesyl diphosphate (Steele et al., 1998). The function of producing a wide array of products by a promiscuous cyclase is two-fold: first, some if not all existing compounds can promote the fitness of ...
180
Senescence of human vocal fold fibroblasts in primary culture
... vocal fold fibroblasts from only a single indi- vidual. Also, the vocal fold fibroblasts were only cul- tured statically, unlike in physiological situations when they are subjected to a variety of ...
12
A Three-fold Historical Trejano Perception of Jesus
... Thus from the above Cursillo movement and ACTS program, one can see the last image of Jesus, as it summarizes the essence of the heart of Jesus and how the [r] ...
12
dissectHMMER: a HMMER-based score dissection framework that statistically evaluates fold-critical sequence segments for domain fold similarity
... more fold-related domain hits through a deeper search depth and subsequently stratifying the quantified hits into functionally-related domain cohorts, dissectHMMER has demonstrated its ability to minimally propose ...
32
Investigating fold-river interactions for major rivers using a scheme of remotely sensed characteristics of river and fold geomorphology
... the fold core to the location where the river crosses the fold axis should be a useful discriminative parameter since, naturally, there is very strong tendency for river incision across a fold to ...
42
Size Selected Ag Nanoparticles with Five Fold Symmetry
... Ag nanoparticles were synthesized by inert gas aggrega- tion, with a high control in the size of the particles. With the experimental conditions used in this work, we were able to produce nanoparticles of six different ...
7
n-fold Commutative Hyper K-ideals
... respectively, which are related to the concepts of commutative, and im- plicative ideals of a BCK-algebra[15]. The relationships between the types of commutative hyper K-ideals have been studied by M.M. Za- hedi and T. ...
10