Gene Expression Omnibus database
Enolase-1 serves as a biomarker of diagnosis and prognosis in hepatocellular carcinoma patients
... Atlas database, and the expression level of ENO1 mRNA in HCC was ...the Gene Expression Omnibus database was conducted to determine ENO1 expression ...ENO1 ...
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Gene expression profiles and protein–protein interaction network analysis in AIDS patients with HIV-associated encephalitis and dementia
... the Gene Expression Omnibus database and the differentially expressed genes (DEGs) between the samples from AIDS patients with and without apparent features of HIVE-induced dementia were ...
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Original Article High expression of NME1 correlates with progression and poor prognosis in patients of hepatocellular carcinoma
... the gene expression omnibus (GEO) database, we discovered that NME1 was more highly expressed in HCC tumor tissues than non-HCC liver tissues (P < ...(TCGA) database, NME1 was ...
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<p><em>ITLN1</em> identified by comprehensive bioinformatic analysis as a hub candidate biological target in human epithelial ovarian cancer</p>
... methods: Gene expression profiles of GSE18520 and GSE27651 were down- loaded from Gene Expression ...Genes Database to assess protein–protein interaction (PPI) informa- tion and the ...
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Integrated whole genome microarray analysis and immunohistochemical assay identifies COL11A1, GJB2 and CTRL as predictive biomarkers for pancreatic cancer
... GEO: Gene Expression Omnibus; GSEA: Gene Set Enrichment Analysis; GO: Gene Ontology; KEGG: Kyoto Encyclopedia of Genes and Genomes; PPI: protein– protein interaction; ROC: receiver ...
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Towards a Toxico-Chemogenomic Future: The Transformation of Public Gene Expression Data and Consideration for its Use.
... public gene expression resources that served as the primary focus of these efforts are the National Center for Biotechnology Information’s (NCBI) Gene Expression Omnibus (GEO) and the ...
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Construction of a circRNA-miRNA-mRNA network based on competitive endogenous RNA reveals the function of circRNAs in osteosarcoma
... the expression profiles of circRNAs, miRNAs and mRNAs in OS from the Gene Expression Omnibus (GEO) database and the TARGET ...by Gene Ontology (GO) and Kyoto Encyclopedia of ...
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<p>Downregulation of RRM2 Attenuates Retroperitoneal Liposarcoma Progression via the Akt/mTOR/4EBP1 Pathway: Clinical, Biological, and Therapeutic Significance</p>
... the Gene Expression Omnibus (GEO) database has shown that RRM2 was overexpressed in liposarcoma (Table 1), and we also proved that RRM2 was highly expressed in RLPS cells ...
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Clinical significance and prospective molecular mechanism of MALAT1 in pancreatic cancer exploration: a comprehensive study based on the GeneChip, GEO, Oncomine, and TCGA databases
... the Gene Expression Omnibus, Oncomine, and The Cancer Genome Atlas databases to determine the clinical diagnostic and prognostic values of ...Atlas database to collect the possible target ...
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Original Article Identification of key pathways and candidate genes in gliomas by bioinformatics analysis
... GSE31095 database was downloaded from the Gene Expression Omnibus (GEO), and a total of 244 DEGs were screened out from blood samples of human glioma patients, including 183 upregulated DEGs ...
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A signature of hypoxia-related factors reveals functional dysregulation and robustly predicts clinical outcomes in stage I/II colorectal cancer patients
... The gene expression profiles of CRC tissue samples obtained from six public cohorts, including 309 CRC patients from the CIT/GSE39582 gene microarray dataset that served as the discovery cohort, were ...
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Combined analysis and validation for DNA methylation and gene expression profiles associated with prostate cancer
... and gene expression profiles) from the Gene Expression Omnibus ...Atlas) database and Oncomine database. And then, the gene ontology (GO) and Kyoto Encyclopedia of ...
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Identification of four hub genes as promising biomarkers to evaluate the prognosis of ovarian cancer in silico
... Weighted gene co-expression network analysis; OS: Overall survival; PFS: Progression-free survival; GEO: The Gene Expression Omnibus; DEGs: Different expression genes; TOM: ...
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Construction of microRNA and transcription factor regulatory network based on gene expression data in cardiomyopathy
... Method: We firstly identified differentially expressed genes (DEGs) between cardiomyopathy patients and controls with data from the gene expression omnibus (GEO) database. DEGs were associated ...
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Identification of genomic expression differences between right-sided and left-sided colon cancer based on bioinformatics analysis
... genomic expression differences between RCC and LCC and uncover the mechanisms underlying these differences, we chose the gene expression profiles of GSE14333 from the Gene Expression ...
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Eleven genes associated with progression and prognosis of endometrial cancer (EC) identified by comprehensive bioinformatics analysis
... the gene expression profile from Gene Expression Omnibus ...the gene in key module and hub PPI ...Atlas database. And then we did ROC curve analysis by SPSS. Gene ...
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Prognostic and predictive values of CDK1 and MAD2L1 in lung adenocarcinoma
... determine gene expression signatures for improved accuracy of prognosis ...integrated expression profiles of 668 lung cancer patients in five datasets from the Gene Expression ...
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Identifying differentially expressed genes from cross-site integrated data based on relative expression orderings
... Detecting differentially expressed genes (DEGs) between two phenotypes is a basic task in high-throughput biological studies. It is often hard to detect DEGs under the circumstances where the genes are differentially ...
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<p>Upregulation of STC2 in colorectal cancer and its clinicopathological significance</p>
... STC2 expression was an indepen- dent prognostic predictor for CRC patients, univariate and multivariate analyses were performed to compare the impact of STC2 expression and other clinicopathological factors ...
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Screening of feature genes of the ovarian cancer epithelia with DNA microarray
... in gene expression, either through mutation, epigenetic regulation, or differential splicing events, influence tumor develop- ment, progression, drug responsiveness and ultimately the survival of the ...
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