genome architecture
Single Cell Transcriptomics Reveal a Correlation between Genome Architecture and Gene Family Evolution in Ciliates
... if genome architecture does not impact patterns of gene family ...that genome architecture and patterns of sequence evolution are not correlated) and further emphasize the impact of different ...
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Evolution of genome architecture in archaea: spontaneous generation of a new chromosome in Haloferax volcanii
... this genome architecture: 1) mutational diversification of a multi-copy chromosome; 2) capture of a new chromosome by horizontal transfer; 3) acquisition of new origins and splitting into two replication- ...
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Evolutionary origins and impacts of genome architecture in ciliates.
... Genome architecture is well diversified among eukaryotes in terms of size and content, with many being radi- cally shaped by ancient and ongoing genome conflicts with transposable elements ...these ...
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Single-cell analysis of the 3D topologies of genomic loci using genome architecture mapping
... Although the GAM method inherently performs single-cell chromatin co-segregation sampling, GAM data have not so far been used for single-cell studies of chromatin architecture. Thus, in this paper we present ...
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The Genome Architecture of the Collaborative Cross Mouse Genetic Reference Population
... ABSTRACT The Collaborative Cross Consortium reports here on the development of a unique genetic resource population. The Collaborative Cross (CC) is a multiparental recombinant inbred panel derived from eight laboratory ...
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Three-dimensional genome architecture and emerging technologies: looping in disease
... of genome architecture by coupling ChIP-seq with Hi-C, and has identified genome-wide cohesin-mediated looping interactions ...3D genome structure in addition to chromatin ...
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Evolution of Genome Architecture in Archaea : Spontaneous Generation of a New Chromosome in Haloferax volcanii
... of genome architecture to arise, three steps are required (but not necessarily in this order): multiplication of origins, multiplication of chromosomes, and linearisation of ...prokaryotic genome ...
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Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants
... high genome architecture variability in most green algae when compared to the extreme con- servation found in flowering plants (about 800 ge- nomes in GenBank) ...
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Genome architecture changes and major gene variations of Andrias davidianus ranavirus (ADRV)
... Indeed, genome architecture changes and major gene vari- ations are the raw material basis for evolutionary emer- gence, and major gene variations have been shown to determine the pathogenicity of viruses ...
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Evolution of plant genome architecture
... typical architecture of the maize plant relative to that of its progenitor, teosinte ...and genome doubling have also been shown to be important in agriculture, as summarized by Olsen and Wendel ...of ...
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Genome architecture of Lactobacillus plantarum PS128, a probiotic strain with potential immunomodulatory activity
... Results: The PS128 genome contains 11 contigs (3,325,806 bp; 44.42% GC content) after hybrid assembly of sequences derived with Illumina MiSeq and PacBio RSII systems. The most abundant functions of the ...
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Relationship Between Sequence Homology, Genome Architecture, and Meiotic Behavior of the Sex Chromosomes in North American Voles
... that experienced divergent evolutionary pressures and re- duced recombination after the Y chromosome acquired a sex-determination gene (Graves 1995b; Charlesworth 1996; Lahn and Page 1999). As a result, the X and Y ...
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Comprehensive Molecular Cytogenetic Analysis of Sorghum Genome Architecture: Distribution of Euchromatin, Heterochromatin, Genes and Recombination in Comparison to Rice
... sorghum genome map has been aligned to the genome maps of other cereals revealing extensive macrocolinearity, especially between sorghum, rice, and maize (P eng et ...The architecture of sorghum ...
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Inversion variants in the human genome: role in disease and genome architecture
... Despite the success of pairedend mapping, there are still challenges to overcome. One important feature of the pairedend mapping approach is that it relies on the reference assembly. It is well established that the ...
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Impact of genome architecture on the functional activation and repression of Hox regulatory landscapes
... The profile of H3K27me3 marks confirmed these ob- servations. In distal cells where the 3′-TAD is normally inactive, the amount of H3K27me3 was significantly re- duced in mutant versus control cells, as if the “proximal ...
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The Architecture and Complete Sequence of Mitochondrial Genome of an Assassin Bug Agriosphodrus Dohrni (Hemiptera: Reduviidae)
... The architecture of A. dohrni mitogenome in- cluding genome content, gene order, and genome asymmetry is consistent with two other reduviid spe- cies ...same genome con- tent (37 genes and 1 ...
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Towards understanding the architecture of the Bicyclus anynana genome
... The butterfly Bicyclus anynana is emerging as a model organism in the field of evo-devo, life history evolution and ageing. However, there are limitations to the detail in which these traits can be unraveled without ...
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Analysis methods for studying the 3D architecture of the genome
... Hi-C data. For instance, very few tools perform comparative analysis, visually or statistically, of two Hi-C contact maps [59, 62, 69, 122], and none of these tools allow joint analysis of more than two datasets that ...
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Architecture, Enterprise Architecture, Frameworks, and Processes
... At the point when organizations shifted to looking at optimizing their whole organizations—to streamline operations and cut costs—the information system began to be seen as the nervous system of the organization, rather ...
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Genome-wide association and prediction reveals genetic architecture of cassava mosaic disease resistance and prospects for rapid genetic improvement
... More recently, a strong qualitative and dominant monogenic resistance known as CMD2 was discovered in a Nigerian landrace (TMEB3) in the 1980s (Akano et al., 2002). Multiple biparental QTL analyses have been conducted, ...
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