Genome assembly and gene annotation
Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis
... gap-free genome sequences of ...for assembly of complete chromosome ...complete genome assemblies, we also attained a comprehensive and highly accurate genome annotation for ...novel ...
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Transcriptome Assembly, Gene Annotation and Tissue Gene Expression Atlas of the Rainbow Trout
... comprehensive genome sequence for rainbow trout are ongoing and will be complemented by transcriptome information that will enhance genome assembly and ...addition, gene expression in differ- ...
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Updated Genome Assembly and Annotation for Metrosideros polymorpha, an Emerging Model Tree Species of Ecological Divergence
... current gene annotation was improved: ...comprehensive gene models. Overall, with increased effort on manual annotation of TEs and the increased number of evidence data, we considerably ...
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An improved microRNA annotation of the canine genome
... Canine genome build and annotation, ...of gene regulation across tissues in the dog model ...dog genome assembly and small RNA sequencing data from 9 different dog tissues to predict ...
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Assembly and repeat annotation of the nothobranchius furzeri genome
... furzeri Genome whole-genome alignment methods based on criteria (>90% identity, >1 kb) which exclude shorter and more divergent ...to assembly errors in the reference ...subsequent gene ...
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Heterogeneous data analysis for annotation of microRNAs and novel genome assembly
... Zoals eerder vermeld, heterogene data integratie is het centrale thema in dit proefschrift. In de hoofdstukken 2 en 3 worden verschillende kenmerken zoals afstand op het genoom, sequentie similariteit, vrije energie en ...
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Assembly and annotation tools for analysis of large contiguous regions of the maize genome
... maize genome is now underway, and others important as foods and biofuels will be sequenced in the near ...the genome, their terminal repeats, and their nested cluster configuration make assembly of ...
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Complete assembly of the Leishmania donovani (HU3 strain) genome and transcriptome annotation
... of gene expression, undertaken either individually or genome wide, requires accurate gene models in which, in addition to the ORF, the UTRs must be precisely ...of gene expression accumulate ...
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Analysis of 14 BAC Sequences from the Aedes Aegypti Genome: A Benchmark for Genome Annotation and Assembly
... silico gene model predic- tion. Gene-prediction algorithms cannot distinguish transpo- son ORFs, resulting in their being annotated along with species-specific ...Resulting gene models may not be ...
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Analysis of 14 BAC sequences from the Aedes aegyptigenome: a benchmark for genome annotation and assembly
... silico gene model predic- tion. Gene-prediction algorithms cannot distinguish transpo- son ORFs, resulting in their being annotated along with species-specific ...Resulting gene models may not be ...
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Genome assembly and annotation ofArabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology
... the genome assembly of the ...genome assembly. Our assem- bly now covers 196 Mb or 78% of the estimated genome size and achieved scaffold N50 length of 712 ...validate assembly ...
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mitoMaker 1.0 a simple script for mitochondrial genome assembly and annotation based in NGS data
... Usage: -cove 10 4.26 – The --bacteria & --archea flag: These flags should be used whether the user is trying to build a bacterial, or archea, target DNA, such as a specific gene of E. coli or the whole ...
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Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees
... complete genome; we undertake to address that deficiency ...larvae genome, and assembled the data using ABySS into a total of 388 contigs spanning ...3568 gene models, and named them based on ...
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Comparative analysis of grapevine whole genome gene predictions, functional annotation, categorization and integration of the predicted gene sequences
... new assembly, it is important to build on as much of the previous work as possible, by transferring 8X annotation of the genome to the 12X ...and gene predictions of the grapevine ...
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A draft annotation and overview of the human genome
... Gene mapping A relational database was used to integrate multiple largely independent maps for the genomic clones, where tran- scripts had been placed. This integration thus results in a transcript map based on ...
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Genome sequencing, assembly, annotation and analysis of Staphylococcus xylosus strain DMB3-Bh1 reveals genes responsible for pathogenicity
... 0.005 Fig. 1 Phylogenetic tree. Neighbour-joining tree based on 16S rRNA gene sequences showing the phylogenetic relationship between Staphylococ- cus xylosus strain DMB3-Bh1 and related members of the genus ...
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De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia
... In this experiment we used young seedlings from five dif- ferent accessions. We experienced problems with extracting sufficient RNA of high quality from older plant material. It seemed reasonable to assume that PAs and ...
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An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation
... NM gene models in Figure 6a exhibits a relatively smoothly decreasing tag abundance- weighted tag sequence count profile as the distance from the 3 ’ terminus ...derived gene models. The inclusion of ...
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Ten steps to get started in Genome Assembly and Annotation
... a genome annotation pipeline is almost always in GFF ...the genome, but usually not the actual ...the annotation process, the sequence of these fea- tures can however easily be ...and ...
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Ten steps to get started in Genome Assembly and Annotation
... a genome annotation pipeline is almost always in GFF ...the genome, but usually not the actual ...the annotation process, the sequence of these fea- tures can however easily be ...and ...
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