GENOME ORGANIZATION
Entropy driven genome organization
... Our results help explain several aspects of genome organization. First, we predict that active (but not inactive) genomes will inevitably be looped, and they are (14,15,17). For example, old evidence shows ...
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Genome organization and epigenetic marks in mouse germinal vesicle oocytes
... Genome organization and epigenetic marks in mouse germinal vesicle oocytes AMELIE BONNET GARNIER*1,2, PRISCA FEUERSTEIN 1,2, MARTINE CHEBROUT 1,2, RENAUD FLEUROT 1,2, HABIB ULLAH JAN 1,2,#, PASCALE DE[.] ...
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Emerging roles of chromatin in the maintenance of genome organization and function in plants
... Genome organization and function depend heavily on local chromatin ...specific organization of nuclear territories in ...of genome organization? Or does it have func- tional ...
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The nucleotide sequence and genome organization of Plasmopara halstedii virus
... The virions were isometric and measured approxi- mately 37 nm in diameter. One polypeptide of ca. 36 kDa and two segments of ssRNA (3.0 and 1.6 kb) were detected. Comparison of a partial nucleotide sequence confirmed the ...
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Evolution of mammalian genome organization inferred from comparative gene mapping
... ancestral genome of all placental mammals can be proposed from analyses of these data (Figure ...malian genome: 3+21, 4+8p+4, 7q+16p, 12p-q+22qt, 12qt+22q, 14+15, and 16q+19q (Figure ...ancestral ...
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Genome Organization and Reverse Genetic Analysis of a Type I Feline Coronavirus
... the genome is covered by the replicase gene comprising ORFs 1a (nt 312 to 12407) and 1b (nt 12362 to ...I genome organization. (a) The type I FCoV genome, ORFs, and TRS elements are shown ...
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The 3D Genome Browser: a web based browser for visualizing 3D genome organization and long range chromatin interactions
... 3D genome organization and gene regulation events simultaneously, we also collected the open chromatin data from the same cell type and display them in the same window ...
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Mycobacteriophage Marvin: a New Singleton Phage with an Unusual Genome Organization
... One of the displaced genes, gene 87, encodes a large protein (1,318 residues) corresponding to gp43 and gp44 of Wildcat (Fig. 7), which are combined into a single open reading frame (Fig. 7). Wildcat gp44 contains a ...
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Determination of the 3D genome organization of bacteria using Hi-C
... the genome into a heteroge- neous population of DNA-protein ...reference genome, a genome-wide prox- imity map is generated in the form of a matrix of pairwise interac- tion frequencies across the ...
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Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: early establishment of the vertebrate genome organization.
... In this paper, we present the complete nucleotide sequence of a sea lamprey mitochondrial genome, in- cluding the pattern of base composition and compari- sons of gen[r] ...
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A novel mitochondrial genome organization for the blue mussel, Mytilus edulis.
... The I-rRNA gene has no directly adjacent tRNA gene to define its 3' end and, therefore, its approximate 3' end was designated as the average position of the end of[r] ...
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Complete nucleotide sequence and genome organization of bovine parvovirus.
... 60.4 to 62.2; 33 amino acids is conserved among autonomous parvoviruses but not in the defective parvovirus AAV2, if the published sequence data of AAV2 50 is used for the translation of[r] ...
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The three dimensional genome organization of Drosophila melanogaster through data integration
... Computational approaches can aid in mapping the global 3D structures of genomes at various scales. These can be divided into data-driven and physics-based de novo simulation techniques [13]. Recent physics-based polymer ...
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Nucleotide sequence and genome organization of canine parvovirus.
... There are 22 amino acid changes between FPV and CPV-b in the capsid gene region Table 4, and 10 of these amino acids are shared with CPV-N.. Four amino acid changes occur between nt 3054[r] ...
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A comparison of the genome organization of capripoxvirus with that of the orthopoxviruses.
... By using the cross-hybridization data, a 4-kb fragment of KS-1 DNA was identified, which corresponds to the regions of the cowpox virus and VV genomes containing genes for the orthopoxvi[r] ...
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The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization.
... Multiple stepwise regression analysis of the predicted products of the protein-encoding genes shows a significant association between the numbers of occurrences of amino acids an[r] ...
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Halophage HF2: genome organization and replication strategy.
... DNA genome which is linear, contains no modified nucleotides, and is not suscep- tible to cleavage by many type II restriction ...the genome recognized AT-rich sites, and five such enzymes, DraI, AseI, ...
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Sequence and genome organization of Borna disease virus.
... However, BDV p40 displays only a very distant homology to other L-gene polymerascs of NNS-RNA viruses, and it does not contain the proposed catalytic domain conserved among NNS- Download[r] ...
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Genome organization of herpesvirus aotus type 2.
... FUCHS, RUDIGER RUGER,* HERBERT PFISTER, AND BERNHARD FLECKENSTEIN Institut fur Klinishche Virologie der Universitat Erlangen-Nurnberg, D-8520 Erlangen, Federal Republic of Germany Receiv[r] ...
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Early evolution of efficient enzymes and genome organization
... Our results demonstrate that a highly specific enzyme set is unlikely to evolve before the invention of chro- mosomes. The appearance of chromosomes is made possible by considerable increase in the fidelity of ...
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