genome sequences
Complete genome sequences of Aeromonas and Pseudomonas phages as a supportive tool for development of antibacterial treatment in aquaculture
... the sequences of terminase large ...The genome sequences of phages described in this study were deposited in GenBank under accession numbers: MH179470 – ...
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Genome Sequences Reveal Cryptic Speciation in the Human Pathogen Histoplasma capsulatum
... Cryptic speciation in Histoplasma. Previous studies have suggested extensive differentiation among genetic clusters of Histoplasma (28, 31). Up to 15 clusters have been proposed, but no taxonomic changes have been made, ...
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Automated design of bacterial genome sequences
... the genome of ...the genome refactoring in a way that we could later provide a corresponding nucleotide ...promoter sequences are known, and their mutation to neutral sequences would ...
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Analysis of Human Genome Sequences to Identify Disease Genes
... "homologous," genes with similar functions. Therefore, the determination of the sequence or function of a gene in a model organism, for instances, the roundworm C. elegans, has the potential to demonstrate a ...
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Non-coronavirus genome sequences identified from metagenomic
... sequencing libraries from SARS-CoV-2 infected patients using fastv, along with the pre-. 110[r] ...
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Draft genome sequences of the type strains of Shigella flexneri held at Public Health England: comparison of classical phenotypic and novel molecular assays with whole genome sequence
... Genomic DNA was isolated from an overnight culture using the Wizard kit (Promega, Madison, Wisconsin, USA) and was sequenced at the Wellcome Trust Sanger Institute (WTSI) and PHE. Paired end libraries where each pair was ...
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Human Cytomegalovirus Genome: Partial Denaturation Map and Organization of Genome Sequences
... iii The longer size class of molecules would be aligned as a separate group, presuming these molecules shared common denaturation sites, and the final overall alignment would be compared[r] ...
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A Core Genome Multilocus Sequence Typing Scheme for Enterococcus faecalis
... with genome sequences from the NCBI and SRA databases highlight the robustness of the selected target genes and thus the suitability of the scheme to investigate the relatedness of ...
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Fast evolving noncoding sequences in the human genome
... CNC sequences were detected using a phylogenetic hidden Markov model (phyloHMM) [35] in the top 5% of the con- served genome (PhastCons conserved elements, 17-way ver- tebrate MULTIZ alignment), as ...
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Organization and nucleotide sequence of a densovirus genome imply a host-dependent evolution of the parvoviruses.
... To ascertain whether any homologous domains exist among the nucleotide sequences of the parvovirus, dependovirus, and densovirus genomes, the genome sequences of rodent parvoviruses H-1 [r] ...
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Complete genome sequence of Cryptobacterium curtum type strain (12-3T)
... whole-genome sequences, as compared to ordi- nary gene sequences, implies that the significant differences between the genome data and the re- ported 16S rRNA gene sequence might be due to ...
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The Tripod for Bacterial Natural Product Discovery: Genome Mining, Silent Pathway Induction, and Mass Spectrometry-Based Molecular Networking
... decades, genome sequencing technologies have evolved, making it cheaper and faster to obtain a whole bacterial genome, for ...theme. Genome mining, the process of extracting information from ...
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Direct next-generation sequencing of virus-human mixed samples without pretreatment is favorable to recover virus genome
... We agree to the existence of mycoplasma contamin- ation. Actually, we have observed the content of myco- plasma in the analysis by using PathSeq, but we assigned the mycoplasma to the “others” category (Additional file ...
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Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT)
... The sequences of the two identical copies of the 16S rRNA genes in the genome differ in 16 positions ...whole-genome sequences, as compared to ordinary gene sequences, implies that the ...
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Community-acquired methicillin-resistant <em>Staphylococcus aureus</em> from ST1 lineage harboring a new SCC<em>mec</em> IV subtype (SCC<em>mec</em> IVm) containing the <em>tetK</em> gene
... ST1 genome sequences showed a direct relation between 2288 and MRSA_ERS410852, despite the absence of tetK in the ...whole genome sequencing technologies to characterize MRSA ...
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Plastid genome and composition analysis of two medical ferns: Dryopteris crassirhizoma Nakai and Osmunda japonica Thunb.
... plastid genome sequences ...plastid genome from different species have been ...plastid genome gene content and orientation are considerably conserved between species [10]; however, there are ...
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The State of Standards in Genomic Sciences
... of genome sequencing ...new genome sequences, leaving a gap in the public research ...Beyond genome reports, there was also a growing demand for other types of articles to meet the needs of a ...
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Inter-Simple Sequence Repeat (ISSR) Markers: Are We Doing It Right?
... The ISSR marker belongs to a class of multilocus, mostly dominant genetic markers that also include the amplified fragment length polymorphism (AFLP), random amplified polymorphic DNA (RAPD) markers, and their ...
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Transmission of the yeast mitochondrial genome : the impact of intergenic sequences
... ori/rep sequences provide the main competitive advantage in transmission of ...intergenic sequences flanking the ori/rep sequences also play a role in modulating the transmission efficiency of a ...
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Genome Sequence of Bovine Herpesvirus 4, a Bovine Rhadinovirus, and Identification of an Origin of DNA Replication
... acid sequences of BoHV-4 and eight other completely sequenced gammaherpesvirus species (HVS, HVA, HHV-8, RRV, EHV-2, AlHV-1, MHV-68, and EBV) were aligned by ClustalW and used for phylogenetic tree con- struction ...
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