Genome size estimation and map coverage
Estimation of Allele Frequencies From High-Coverage Genome-Sequencing Projects
... of coverage, combined with the masking of duplicated DNA (when a reference genome is avail- able), will aid in the elimination of such problematical ...
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Computational Estimation of Fetal DNA Fraction in Low Coverage Whole Genome Sequencing Data
... low coverage WGS data, generated by the means of Il- lumina or some another platform ...low coverage cell-free whole ge- nome sequencing data from 416 pregnant women were used to develop a chromosome Y ...
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A Comprehensive Linkage Map of the Dog Genome
... linkage map for the domestic dog. The new map improves access to the dog’s unique biology, from human disease counterparts to fascinating evolutionary ...The map was constructed with 3000 ...
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A Cis-Regulatory Map of the Drosophila Genome
... Methods Summary ChIP experiments were performed on whole Drosophila melanogaster animals from the following developmental stages: embryonic stages 0–4h, 4–8h, 12–16h, 16–20h, 20–24h, larval stages L1, L2, and L3, pupal ...
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Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome
... AGS estimation, we simulated 20 metagenomes that were composed of be- tween 0 and 50% of reads from phage genomes and used MicrobeCensus to estimate AGS for these communities (Additional file 6; Materials and ...
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A BAC-based physical map of the chicken genome
... A genome-wide physical map constructed with bacterial artificial chromosomes (BACs) is an essential component in linking phenotypic traits to the responsible genetic variation in the genomes of plants and ...
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A high utility integrated map of the pig genome
... human genome, we have been able to identify approximately 30 regions that are potentially segmentally duplicated in the pig ...the map assembly stringency we have begun to resolve these regions prior to ...
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A BAC-based physical map of the apple genome
... BamHI BAC library, and three positive BAC clones were identified. The positive clones were then used to detect corresponding contigs by searching the FPC database, and a contig containing the three clones was found. The ...
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Quantitative PCR based genome size estimation of the astigmatid mites Sarcoptes scabiei, Psoroptes ovis and Dermatophagoides pteronyssinus
... House dust mites (Dermatophagoides pteronyssinus), separated into the two sexes, were purchased from the Siriraj Dust Mite Centre for Services and Research, Department of Parasitology, Mahidol University, Bang- kok, ...
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Indoor Floorplan with WiFi Coverage Map Android Application
... Inspired Approaches Among all those approaches to create an AR mobile app, we were inspired by an existing mobile app called Magic Plan. It measures the size of the room, draws the floor plan and creates a DXF ...
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A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure
... 84. Ammiraju JS, Luo M, Goicoechea JL, Wang W, Kudrna D, Mueller C, Talag J, Kim H, Sisneros NB, Blackmon B, Fang E, Tomkins JB, Brar D, MacKill D, McCouch, N. Kurata, G. Lambert, D. W. Galbraith, K. Arumuganathan, K. ...
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A BAC-based physical map of the channel catfish genome
... whose genome was homozygous, whereby sequence polymorphism was minimal, if ...the genome size should be considered for the selection of the cutoff ...catfish genome is approximately 1/3 the ...
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A Genome-Wide Map of Mitochondrial DNA Recombination in Yeast
... a map of local recombination rates across the mitochondria, the mitochondrial genome was binned into 1-kb windows, shifted by 50 ...short size of the probes (usually ,300 bp), we assumed that a ...
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A map of human genome variation from populationscale sequencing.pdf
... human genome sequence variation as a foundation for investigating the relationship between genotype and ...for genome-wide sequencing with high-throughput ...
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A BAC-based physical map of the Drosophila buzzatii genome
... 3 Genome Sciences Centre, ...of genome evolution, ecological adaptation, and ...insert size of 152 kb and an ∼18× expected representation of the ...actual genome representation to be ...high ...
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ON THE SIZE OF A MAP
... E-mail: [email protected] Abstract. Some properties depending on an upper bound of the diameter of fibers of a continuous map f from the n-dimensional unit cube I n to the Euclidean space are investigated. ...
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A physical map of the bovine genome
... composite map orders are probably less than optimal, because explicitly evaluating n!/2 possible orders, where n may represent a hundred or more markers on each chromosome, is computa- tionally ...alternative ...
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Genome size evolution in the Archaea
... in genome size, gene content and genetic diversity at the broadest scales across the tree of life? Much of the existing work contrasts eukaryotes with prokaryotes, the latter represented mainly by ...of ...
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Construction of the genetic map of the polyoma genome.
... Mutant FII DNA was combined with the full complement of mutant restriction endonuclease fragments, produced by restriction nuclease digestion of FI mutant DNA, and a single, purified wil[r] ...
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Physical map of the BK virus genome.
... Samples (50 Mil) containing 32P-labeled prototype BKV (panel 3), BKV(JM) (panel 5), or BKV(MM) (panel 7) DNAs were digested with R -Hind and analyzed by electrophoresis in composite 3% p[r] ...
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