insertions and deletions
Genome Wide Spectra of Transcription Insertions and Deletions Reveal That Slippage Depends on RNA:DNA Hybrid Complementarity
... candidate insertions and ...(The insertions and deletions used in our analyses are provided as Data Sets in the supplemental ...those insertions or deletions that occurred at identical ...
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Exploring insertions and deletions (indels) of MSRB3 gene and their association with growth traits in four Chinese indigenous cattle breeds
... explore insertions and deletions (indels) in MSRB3 gene and investigate their association with growth traits in four indigenous cat- tle breeds (Luxi cattle, Qinchuan cattle, Nanyang cattle, and Jiaxian Red ...
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Linear-time protein 3-D structure searching with insertions and deletions
... Results: We consider an important, fundamental problem of reporting all substructures in a 3-D structure database of chain molecules (such as proteins) which are similar to a given query 3-D structure, with consideration ...
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The role of small in-frame insertions/deletions in inherited eye disorders and how structural modelling can help estimate their pathogenicity
... Integrative structural modeling in childhood cataract cases In the majority of cases, simply highlighting the position of the indel on the protein structure gave a clear indica- tion of its likely phenotypic effect. For ...
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The association of insertions/deletions (INDELs) and variable number tandem repeats (VNTRs) with obesity and its related traits and complications
... 13 insertions and 27 deletions that range between 1 and 9 bp, of which 16 overlap known INDELs in dbSNP and 24 are potential novel INDELs ...Three insertions (minor allele frequency < 5%) reside ...
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Chemogenomic Screen for Imipenem Resistance in Gram-Negative Bacteria
... pneumoniae, 1,379 SNVs were detected (Fig. 1A), with an average of 22 mutations (range, 5 to 39) per genome (Table S3). In P. aeruginosa, 654 SNVs were identified (Fig. 1A), with an average of 10 mutations (range, 2 to ...
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Variation of the Mycobacterium tuberculosis PE PGRS33 Gene among Clinical Isolates
... of insertions and deletions found in the PGRS domain of the PE_PGRS33 gene (1, ...the insertions and deletions found within the PGRS domain in this study did not change the reading ...
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LoRTE: Detecting transposon-induced genomic variants using low coverage PacBio long read sequences
... TE insertions and deletions, each 3′ and 5′ flanking sequences of the corresponding predictions in the PacBio reads are aligned on the Falcon assembly using MEGA- ...
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Evaluating the Pairwise String Alignment of Pronunciations
... the insertions and deletions we also found a significant relationship: Spearman’s ρ = ...only insertions and deletions and therefore up to twice as long as the alignments in the gold ...
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Diversification of the Ig Variable Region Gene Repertoire of Synovial B Lymphocytes by Nucleotide Insertion and Deletion
... nucleotide insertions and deletions (3 to 12 bp) at a frequency of ...genes. Insertions and deletions were detected only in IgG + and IgA + transcripts, which exhibited 3 times more point ...
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Spontaneous Mutations Occur Near Dam Recognition Sites in a dam-Escherichia coli Host
... The majority of mnt- mutations isolated in a dum+ host is insertions and deletions: T h e positions and sequence changes of mutations mapping outside the Mnt operator iso[r] ...
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Length Requirements for Membrane Fusion of Influenza Virus Hemagglutinin Peptide Linkers to Transmembrane or Fusion Peptide Domains
... that insertions and deletions of as many as eight residues at the C-end can remain functional is consistent with the hypothesis that this domain exists as a flexible polypeptide chain following acid-induced ...
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Unique Pattern of Convergent Envelope Evolution in Simian Immunodeficiency Virus-Infected Rapid Progressor Macaques: Association with CD4-Independent Usage of CCR5
... substitutions, insertions, and deletions, primarily in the V1 region of the envelope, substitutions in the V4 and V5 regions, and the acquisition of potential N-linked glycosylation sites through the SU ...
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DCJ-Indel sorting revisited
... By Proposition 1, we may consider the circular single- tons of and independently of other chromosomes; for that matter, because insertions and deletions are defined symmetrically, we may assume that contains ...
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High Frequency and Diversity of Rearrangements in Polyomavirus BK Noncoding Regulatory Regions Cloned from Urine and Plasma of Israeli Renal Transplant Patients and Evidence for a New Genetic Subtype
... Polyomavirus BK (BKV) establishes latent infection in various human tissues, including the kidney. Reac- tivation following renal transplantation (RT) may cause BKV-associated nephropathy, leading to graft loss. BKV ...
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Neutral genomic microevolution of a recently emerged pathogen, salmonella enterica serovar agona
... XLSX Figure S1 Genealogy of 73 Agona genomes based on nonrecombinant, non-mobile SNPs in the core genome versus insertions and deletions associated with mobile elements.. The genealogy r[r] ...
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Extensive Mutagenesis of the Hepatitis B Virus Core Gene and Mapping of Mutations That Allow Capsid Formation
... expressed capsids were proposed by others (5, 8). In our study, domains I to VII were defined in the core protein primary amino acid sequence according to the effect of insertions and deletions on stable ...
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SRC TN 1997 021 pdf
... concerning deletions and one concerning ...constraints). Insertions of edges are then temporarily processed outside the sparsification paradigm, and from time to time handled further in a batch-like ...
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Host range mutants of v-src: alterations in kinase activity and substrate interactions.
... In the case of mutants SPX1, SHX13, and XD6, which contain linker insertions or small deletions within the SH2 domain, the kinase activitics of the mutant proteins, with enolase as the s[r] ...
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X-linked Alport syndrome: pathogenic variant features and further auditory genotype-phenotype correlations in males
... as deletions, insertions, splicing variants, direct or indirect nonsense mutations, and missense variants (including Gly or non-Gly substitutions) in COL4A5 gene have been identified ...
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