Long terminal repeat retrotransposons
Diversity, dynamics and effects of long terminal repeat retrotransposons in the model grass Brachypodium distachyon
... of long terminal repeat retrotransposons in the model grass Brachypodium distachyon Stritt, Christoph ; Wyler, Michele ; Gimmi, Elena L ; Pippel, Martin ; Roulin, Anne C Abstract: Transposable ...
14
Long terminal repeat retrotransposons of Oryza sativa
... LTR retrotransposons using LTR_STRUC LTR_STRUC identifies new LTR retrotransposons on the basis of the presence of characteristic retroelement features ...
11
Long terminal repeat retrotransposons of Mus musculus
... comm en t re v ie w s re ports refer e e d re sear chdeposited research interacti o ns inf o rmation Our purpose in using LTR_STRUC to begin our survey of the mouse genome was to obtain a broadly representative sample of ...
8
Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons
... Ngaro retrotransposons and Crypton DNA transposons were also found to encode the same class of proteins (tyrosine ...LTR retrotransposons and the Ginger DNA transposons is of particular interest from the ...
10
Isolation and characterization of putative functional long terminal repeat retrotransposons in the Pyrus genome
... isolated retrotransposons might be ...isolated retrotransposons were highly ...a long time, but have rapidly expanded during the last ...of retrotransposons within the genus ...
10
Transcriptional Regulation of Early Transposon Elements, an Active Family of Mouse Long Terminal Repeat Retrotransposons
... the long terminal repeat (LTR) were demonstrated to bind Sp1 and Sp3 transcription factors and were found to be important for high LTR promoter activity in P19 cells, suggesting that as yet ...
10
Host Factors That Control Long Terminal Repeat Retrotransposons in Saccharomyces cerevisiae: Implications for Regulation of Mammalian Retroviruses
... While the model that genome maintenance factors directly promote degradation of Ty1 cDNA fits with their roles in preserving genome integrity, some observations are inconsis- tent with this model. First, host factors ...
12
Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes
... other long terminal repeat retrotransposons, TRIMs are enriched in or near genes; they are also targeted by sRNAs between 21 and 24 nucleotides in length, and are frequently found in CG ...
17
Non-long terminal repeat (non-LTR) retrotransposons: mechanisms, recent developments, and unanswered questions
... LTR retrotransposons are major components of eukary- otic genomes and our cells have evolved elaborate mecha- nisms to deal with these selfish ...of retrotransposons in mice and tissue culture also suggest ...
12
The structure, organization and radiation of Sadhu non-long terminal repeat retroelements in Arabidopsis species
... 8. Voytas DF, Cummings MP, Koniczny A, Ausubel FM, Rodermel SR: copia-like retrotransposons are ubiquitous among plants. Proc Natl Acad Sci USA 1992, 89:7124-7128. 9. Swarbreck D, Wilks C, Lamesch P, Berardini TZ, ...
13
Further Evidence for the Protein Coding Potential of the Mouse Mammary Tumor Virus Long Terminal Repeat: Nucleotide Sequence of an Endogenous Proviral Long Terminal Repeat
... Restriction mapping of the proviral DNA of these cells indicated that they contained 20 to 30 copies of newly acquired exogenous C3H virus in addition to the three endogenous MMTV units [r] ...
9
Characterization of equine infectious anemia virus long terminal repeat.
... The long terminal repeats (LTRs) of equine infectious anemia virus (EIAV) were examined with respect to.. their ability to function as transcriptional promoters in various cellular envir[r] ...
5
Transcriptional Targeting of Lentiviral Vectors by Long Terminal Repeat Enhancer Replacement
... their long-term repopulation and differentiation ...viral long terminal repeat (LTR) enhancer with cell lineage-specific, genomic control ...
12
Multiple protein-binding sites in an intracisternal A particle long terminal repeat.
... Symbols: 0, 0, exo III contact points (0, noncoding strand; 0, coding strand) (w, weak exo III stop site); *+ - - - -*, boundaries of the protein-DNA interactions as determined by DNase [r] ...
8
The long terminal repeat of the intracisternal A particle as a target for transactivation by oncogene products.
... In CV-1 cells infected with SV40 or in COS-M6 cells, in which T antigen is expressed constitutively, CAT activity directed by the two LTR promoters was enhanced 10-fold.. CAT activity di[r] ...
6
Activation of caprine arthritis-encephalitis virus long terminal repeat by gamma interferon.
... Caprine arthritis-encephalitis virus (CAEV) is a lymphotropic lentivirus whose replication increases during monocyte maturation. We examined gene expression directed by the CAEV long terminal repeat ...
5
Glucocorticoid receptor-binding site in the human immunodeficiency virus long terminal repeat.
... Chicken ovalbumin upstream region promoter transcription factor binds to a negative regulatory region in the human immunodeficiency virus type I long terminal repeat. Regulation of HIV-1[r] ...
5
Identification of a hypervariable region in the long terminal repeat of equine infectious anemia virus.
... results demonstrated sequence differences in the hypervari- able region both within and between the Massachusetts- related isolates (MA-1 and Th-1 clones) and the Wyoming isolates of EIA[r] ...
6
DNA-binding proteins that interact with the long terminal repeat of radiation leukemia virus.
... We used the electrophoretic mobility shift assay to identify the interactions of nuclear proteins with the long terminal repeat of leukemogenic, thymotropic BLIVL3 radiation leukemia vir[r] ...
7
Characterization of enhancer elements in the long terminal repeat of Moloney murine sarcoma virus.
... peat (pSrM13 and pSrM14), the promoter proximal B repeat (pSrM15), and both 73/72-bp tandem repeats (pSrM11 and pSrM12) were placed 5' to the SV40 early promoter at the BglII site follow[r] ...
7