metagenomic approach
Molecular Phylogeny of Arctic Microbes Using Metagenomic Approach
... Metagenomic approach to the characterization of uncultured and mixed bacterial consortium has been used in this study for a few arctic micro-organisms. Arctic soil, collected from one spot at Ny Alesund in ...
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Metagenomic Approach for Identification of the Pathogens Associated with Diarrhea in Stool Specimens
... complex metagenomic sample, the species identification is based on read depth and the coverage of the reference ...analytical approach only supports their concomitant presence in the gut environment but ...
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Identification and characterization of a novel thermostable pyrethroid-hydrolyzing enzyme isolated through metagenomic approach
... the metagenomic approach. Therefore, metagenomic libraries should be useful for screening novel thermostable enzymes, includ- ing esterases, but no such libraries have been reported yet from thermal ...
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Unbiased Parallel Detection of Viral Pathogens in Clinical Samples by Use of a Metagenomic Approach
... our metagenomic approach identified seven spe- cies of known respiratory viral agents in 15 samples, and these results were in agreement with those of conventional PCR methods (Table ...the ...
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Identification and characterization of a new true lipase isolated through metagenomic approach
... Results: In preliminary screening on agar containing 1% tributyrin, 2661 of the approximately 500,000 clones in the metagenomic library showed activity. Of these, 127 showed activity on agar containing 1% ...
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Abnormal fecal microbiota community and functions in patients with hepatitis B liver cirrhosis as revealed by a metagenomic approach
... sequencing approach [10,11], which made it possible to characterize significant cirrhosis- related alterations in the microbiota community and func- tions in the present ...
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Metagenomic approach in study and treatment of various skin diseases: a brief review
... 2015). Metagenomic study has been perceptive in understanding the taxonomic differences associated with psoriasis and hence offers the potential to overcome the limitations of culture-based ...
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Midgut microbiota of two earthworms pheretima posthuma and eisenia fetida-a metagenomic approach
... Earthworms are friends to mankind from time immemorial and are said to be farmers with . Among the soil invertebrates, earthworms play an essential role in carbon turnover, nitrogen mineralization, soil formation, ...
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A metagenomic approach from aphid’s hemolymph sheds light on the potential roles of co-existing endosymbionts
... aphidicola and Wolbachia occurs in the banana aphid, the two bacteria acting together to supply essential nutrients to the host.. This is, to our knowledge, the first time Wolbachia is r[r] ...
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Direct Detection of Shigella in Stool Specimens by Use of a Metagenomic Approach
... of metagenomic taxonomical read assignment methods, we evaluated the performance and limits of four popular tools: Kraken (15), Clark (16), MetaPhlan2 (17), and Kaiju ...
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Using metagenomic analyses to estimate the consequences of enrichment bias for pathogen detection
... a metagenomic approach, illustrate that the procedure of enriching a sample results in a drastically different taxonomic profile beyond that of the abundance of the target ...
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Genome Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs
... Summary. In this study, we analyzed petroleum reservoir pro- duced water samples collected from six production wells, from different depths, temperatures, and H2S concentrations using a genome-resolved metagenomic ...
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Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak
... confirmed cases reported over the three previous years combined (3). The unprecedented scale of the outbreak raised fears of the emergence of a strain with a higher rate of transmission. Due to these concerns, on ...
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Soil metagenomics: a prospective approach for novel enzyme discovery
... on metagenomic approaches which initially were dependent upon cloning of a DNA from an environmental sample (Healy et ...many metagenomic approaches have relied on high-throughput ...a metagenomic ...
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Salivary glands harbor more diverse microbial communities than gut in Anopheles culicifacies
... a metagenomic approach, we have identified for the first time the diverse microbial community associated with these two physiologically different tissues of the digestive system in the mosquito Anopheles ...
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Inexpensive metagenomic DNA extraction protocol with high quality from marine sediments contaminated by petroleum hydrocarbons.
... The suitability of this mgDNA extraction protocol lies in the fact that all chemical solutions utilized are common in all molecular biology laboratories, and the use of dialysis membrane does not require any ...
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Metagenomic characterization of ambulances across the USA
... probes, blood pressure cuffs and bulbs, control panels, automated external defibrillators [AEDs], and monitors), stretchers, handles, rails, and cabinets. Samples were processed to extract DNA and 398 of the 1407 samples ...
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MetaPalette: a k-mer Painting Approach for Metagenomic Taxonomic Profiling and Quantification of Novel Strain Variation
... Another approach identifies features that are characteristic of particular organisms, such as the frequency of k-mers ...this approach can accurately detect and classify organisms that are highly diverged ...
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Metagenomic Methods In Idiopathic And Immune Diseases
... of metagenomic sequencing in disease research, we need new high-precision experimental and statistical methods that reach clinical standards of ...of metagenomic sequencing with immune repertoire sequencing ...
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Diversity of Virophages in Metagenomic Data Sets
... of metagenomic databases re- vealed the global distribution and distinct abundance of vi- rophage-related sequences, which suggested that virophages are common entities on ...
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