Nucleosome positioning
Nucleosome positioning in Arabidopsis
... of nucleosome positioning signals within the human genome (Kato et ...of nucleosome positioning signals are encoded in the DNA sequence and spaced at (multiples of) 10 bp periods, but the ...
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Krietenstein, Nils (2017): Dissection of nucleosome positioning mechanisms by genome-wide in vitro reconstitution. Dissertation, LMU München: Medizinische Fakultät
... Color-coded nucleosome dyad densities for 4,118 genes (row-by- ...shows nucleosome positions obtained by pure histone-DNA interactions during salt gradient dialysis and after further incubation for 2 h in ...
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N6 methyldeoxyadenosine directs nucleosome positioning in Tetrahymena DNA
... the nucleosome pattern of the KO ...affect nucleosome positions observed in the wild-type ...genome-wide nucleosome po- sitioning ...genome-wide nucleosome profile was significantly altered in ...
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Hertel, Christina (2006): In Vitro Studies of Nucleosome Positioning and Stability at the PHO5 and PHO8 Promoters in Saccharomyces cerevisiae. Dissertation, LMU München: Fakultät für Biologie
... in nucleosome positioning at the PHO5 and PHO8 promoter in de novo chromatin ...a nucleosome shifting reaction allowed testing of a possible involvement of RNA in nucleosome ...the ...
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Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning
... In summary, these results indicate that centromere DNA elements influence chromatin structure but leave open the question of whether one or more of these distinct modes of nucleosome positioning have ...
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Walker, Maria (2019): Interplay of nucleosome positioning and transcription initiation in Schizosaccharomyces pombe. Dissertation, LMU München: Medizinische Fakultät
... factor-independent/cis-factor nucleosome positioning mechanism is based on a DNA- sequence-driven mechanism involving exclusively DNA and ...for nucleosome positioning postulates that DNA ...
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Physics behind the mechanical nucleosome positioning code
... behind nucleosome sequence preferences as they arise from the sequence-dependent geometry and elasticity of the DNA double ...known nucleosome positioning ...when nucleosome position ...
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Möbius, Wolfram (2010): Physical aspects of chromatin constituents: DNA dynamics and nucleosome positioning. Dissertation, LMU München: Fakultät für Physik
... of nucleosome positions have revealed a salient pattern around transcription start sites, involving a nucleosome-free region (NFR) flanked by a pronounced periodic pattern in the average nucleosome ...
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Nucleosome-Positioning Sequence Repeats Impact Chromatin Silencing in Yeast Minichromosomes
... through nucleosome arrays was studied by placing various repeats of clone-601 DNA with high af fi nity for histones between the silencer and reporter in the yeast ...clone-601 nucleosome positioning ...
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Pointner, Julia (2013): Genome-wide identification of nucleosome positioning determinants in schizosaccharomyces pombe. Dissertation, LMU München: Fakultät für Biologie
... the nucleosome [187, ...lower nucleosome stability ...influences nucleosome positioning and chromatin structure. Slight nucleosome positioning changes upon ...in ...
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Nucleosome Positioning and Histone H3 Acetylation Are Independent Processes in the Aspergillus nidulans prnD-prnB Bidirectional Promoter
... repressed nucleosome pattern is identical to that seen under in- ducing conditions, which is also identical to the pattern obtained under inducing conditions in the wild-type ...to nucleosome ⫹ ...of ...
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Nucleosome positioning is unaltered at MLH1 splice site mutations in cells derived from Lynch syndrome patients
... Nucleosome positioning describes the precise location of a given nucleosome, whereas nucleosome occupancy refers to the proportion of molecules bearing a nucleo- some at a specific location, ...
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Methylation in Nucleosome Positioning
... strong nucleosome expelling effect which would result in increased gene ...and nucleosome positioning are not a one on one mapping of each ...expression, nucleosome positioning being ...
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An in vitro -identified high-affinity nucleosome-positioning signal is capable of transiently positioning a nucleosome in vivo
... Dyad positioning scores [25] were obtained by count- ing the number of nucleosome dyads that sit within a fixed narrow window (± 5 bp) around a particular base pair, and dividing this by the number of dyads ...
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Lantermann, Alexandra (2010): Comparison of Genome-Wide Nucleosome Positioning Mechanisms in Schizosaccharomyces pombe and Saccharomyces cerevisiae. Dissertation, LMU München: Fakultät für Biologie
... the nucleosome positioning pattern of the salt gradient dialysis chromatin at ...the nucleosome positioning pattern was both different from the in vivo-like pattern and from the pattern ...
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The Effect of Synonymous Codon Usage on Nucleosome Positioning
... wide nucleosome map of all in vitro and in vivo nucleosomes of ...stereotypical nucleosome array downstream of the TSS, both in vitro and in ...a nucleosome depleted region (located just before the ...
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Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome positioning
... The naked DNA sample and one dst1∆ mutant DNA sample were used to create sequencing libraries, which were subjected to 36-nucleotide single-read sequenc- ing in a Solexa Genome Analyzer IIx (Illumina). After quality ...
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Characterization of Nucleosome Positioning in Hepadnaviral Covalently Closed Circular DNA Minichromosomes
... Determination of nucleosome binding positions on cccDNA minichromosomes by real-time PCR. To supply more evidences to the claim that the protected regions of DHBV cccDNA in the viral minichromosomes are associated ...
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Hypomethylated domain-enriched DNA motifs prepattern the accessible nucleosome organization in teleosts
... positioned nucleosome array and DNA ...of nucleosome positioning from DNA sequence has been successful in some organisms such as ...accessible nucleosome organization with longer linkers, and ...
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The role of DNA sequence in nucleosome breathing
... the positioning of nucle- osomes along genomes (alongside other effects, such as competition for DNA binding with other proteins, and the active positioning by chromatin remodelers ...“nucleosome ...
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