nucleotide diversity
A Method for Estimating Nucleotide Diversity From AFLP Data
... the nucleotide diversity from AFLP data is developed by using the relationship between the number of nucleotide changes and the proportion of shared ...of nucleotide changes per site ...
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Extremely low nucleotide diversity in the X linked region of papaya caused by a strong selective sweep
... removed diversity across the entire ...eliminate diversity across a ...the nucleotide diversity is much lower for the Y-linked than X-linked genes, while the autosomal se- quences have ...
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Patterns of Nucleotide Diversity in Wild and Cultivated Sunflower
... of nucleotide diversity in domesticated plant lineages has recently been motivated by the potential for using association-based mapping techniques as a means for iden- tifying the genes underlying complex ...
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Low Nucleotide Diversity in Chimpanzees and Bonobos
... either GenScan or GRAIL-EXP. of sampling on nucleotide diversity () because is the Touchdown PCR (Don et al. 1991) was used and the reac- quantity of our primary interest in this study; is de- tions ...
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Nucleotide Diversity in Gorillas
... of nucleotide diversity among the three late that this last common ancestor of the African apes common chimpanzee subspecies as estimated from and humans, with its large effective population size, may mtDNA ...
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Hierarchical Analysis of Nucleotide Diversity in Geographically Structured Populations
... We present an unbiased version of NEI’S nucleotide diversity statistics and show that our modification has the same properties as WRIGHT’S Fw We compare its statistical p[r] ...
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Evolutionary Factors Shaping Haplotype and Nucleotide Diversity in Humans and Malaria
... By applying measures of population differentiation and tests for deviations from the standard neutral model, we compared classes of mutations (silent and replacement) and subsets of fu[r] ...
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Low nucleotide diversity in man.
... YOUNG, 1987 Molecular cloning, nucleotide sequence, and expression of the gene encoding human eosinophil differentia- tion factor (interleukin 5).. FOTHERGILL, 1988 Genomic [r] ...
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CHLOROPLAST AND MITOCHONDRIAL DNA VARIATION IN HORDEUM VULGARE AND HORDEUM SPONTANEUM
... Estimates of nucleotide diversity using the shared fragment method of NEI and LI (1979) and grouping of mitochondrial DNA types revealed a number of features about t[r] ...
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On the Analysis of Intrahost and Interhost Viral Populations: Human Cytomegalovirus as a Case Study of Pitfalls and Expectations
... viral diversity are often treated as measures of separate and distinct evolutionary processes, with numerous investiga- tions reporting seemingly incompatible results between the ...the nucleotide ...
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Glinka, Sascha (2005): Population Genetic Approaches to Detect Natural Selection in Drosophila melanogaster. Dissertation, LMU München: Fakultät für Biologie
... skew towards high frequency derived variants. However, we observed no deviation from neutrality in the H statistic in any of the fragments (Table 3.1). Given the strong haplotype structure in fragment 593, we would ...
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Deep sequencing of hepatitis C virus hypervariable region 1 reveals no correlation between genetic heterogeneity and antiviral treatment outcome
... as nucleotide diversity per site, genetic distance, and number of nucleotide substitutions also did not differ significantly between responders and ...
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Intraspecific Relationships and Variation of Two Lefua Species (Balitoridae, Cypriniformes) in the Tokai Region, Honshu, Japan
... echigonia from the Tokai region Values of the haplotype diversity in Lefua sp.2 were relatively high and similar between groups Table 5, but values of the nucleotide diversity were very [r] ...
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Nucleotide Sequence Based Analysis for Determining the Molecular Epidemiology of Penicillium marneffei
... of nucleotide sequences would facilitate epidemiologic investigations of this ...by nucleotide sequence ...no nucleotide sequence polymorphisms were observed for three gene fragments: StlA, AbaA, and ...
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The Relationship of Nucleotide Polymorphism, Recombination Rate and Selection in Wild Tomato Species
... single nucleotide polymorphisms using 14 single-copy nuclear loci from single populations of five species of wild tomatoes (Solanum sec- tion ...in nucleotide diversity in the SC populations compared ...
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The Influence of Linkage and Inbreeding on Patterns of Nucleotide Sequence Diversity at Duplicate Alcohol Dehydrogenase Loci in Wild Barley (Hordeum vulgare ssp. spontaneum)
... of nucleotide diversity and test statistics for devia- Estimates of linkage disequilibria and their associated levels tion from a neutral genealogy for all three genes of significance were obtained using ...
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Genotype and Subtype Independent Full Genome Sequencing Assay for Hepatitis C Virus
... HCV nucleotide diversity varied greatly within the samples from the studied patients, and no spe- cific patterns were observed in a comparison of common and rare ...sequence diversity is linked to ...
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Limited genetic variability of Cytauxzoon felis apical membrane antigen 1 (ama1) from domestic cats and bobcats
... genetic diversity in AMA1 ...of nucleotide diversity between related apicomplexans, all sample sets, save that for ...higher diversity suggesting sample size is not limiting our ability to ...
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Phylogenomics of Colombian Helicobacter pylori isolates
... low nucleotide diversity with high haplotype diversity was found; (2) high genetic dif- ferentiation with constant genetic flow was determined; (3) both genes showed areas under strong selective ...
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Detecting positive selection in the genome
... Some of the strongest evidence for adaptive molecular evolution has come from application of the McDonald- Kreitman (MK) test [3] and methods based on it. Testing for evidence of positive selection requires a suitable ...
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