Oxford nanopore
Rapid Sequence Based Characterization of African Swine Fever Virus by Use of the Oxford Nanopore MinION Sequence Sensing Device and a Companion Analysis Software Tool
... Another advantage of the system described herein is the improvement of ASFV-targeted sequencing libraries by increasing the number of ASFV-specific reads in relation to the total reads. This is accomplished using a ...
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The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
... The MinION is a 90-g portable device. At its core is a flow cell bearing up to 2048 individually addressable nanopores that can be controlled in groups of 512 by an application-specific integrated circuit (ASIC). Prior ...
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Performance of neural network basecalling tools for Oxford Nanopore sequencing
... Our custom-Kp-big-net model trained on the same data as custom-Kp but with a larger neural network, Additional file 1: Figure S2 delivered even further improvements in both read accuracy[r] ...
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Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak
... outbreak, viral genome sequencing directly from clinical samples using a metagenomic approach on.. the Oxford Nanopore MinION device (Oxford Nanopore Technologies, Oxford, UK).[r] ...
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Fusobacterium Genomics Using MinION and Illumina Sequencing Enables Genome Completion and Correction
... The genome of F. nucleatum subsp. nucleatum ATCC 25586, which is the standard F. nucleatum reference strain, was completed in 2002 using cosmid and phage technologies to achieve long (10-to-35-kb) insertions into ...
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Evaluating nanopore sequencing data processing pipelines for structural variation identification
... by Oxford Nanopore Technologies (ONT) [9, 10] has gained popu- larity in recent ...methods, nanopore sequencing does not require the de- tection of a fluorophore which typically indicates a prod- uct ...
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Nanopore sequencing and assembly of a human genome with ultra long reads
... We report the sequencing and assembly of a reference genome for the human GM12878 Utah/Ceph cell line using the MinION (Oxford Nanopore Technologies) nanopore sequencer. 91.2 Gb of sequence data, ...
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Introducing DNA Sequencing to the Next Generation on a Research Vessel Sailing the Bering Sea Through a Storm
... Table 1 – Estimated budget for the deployment of one Oxford Nanopore MinION station for the metagenomic sequencing of one sample. Company Product Cat.[r] ...
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Determining exon connectivity in complex mRNAs by nanopore sequencing
... the Oxford Nanopore MinION that could cause users to choose one platform over the ...the Oxford Nanopore ...the Oxford Nanopore MinION, each molecule is se- quenced at most twice ...
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Rapid draft sequencing and real time nanopore sequencing in a hospital outbreak of Salmonella
... rapid response was required to ensure that infection control measures were appropriately targeted. Outbreak investigations are aided by rapid availability of whole- genome sequencing (WGS) data, as this provides the ...
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The Oxford Handbook of Evidentiality
... otics of linguistic practices, epistemes and ontologies of colonial linguistics, as well as lin guistic description. She has contributed to the analysis of registers and choices, language as social practice, ways of ...
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Nanopore Detector Feedback Control Using Cheminformatics Methods Integrated with Labview/Labwindows Tools
... the nanopore detector, a lot of times noise serves as a signal that tells where the noise is originating ...The nanopore detector itself is very sensitive to AF ...the nanopore detector is Gaussian ...
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Oxford Textbook of Medicine.pdf
... du Bois Professor of Respiratory Medicine, National Heart and Lung Institute, University College London and Consultant Physician, Royal Brompton Hospital, London, UK.. 17.11.1 Diffuse p[r] ...
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Oxford Scholarship Online
... Putting together a list of titles might well prove a formidable challenge for any other vendor than Oxford University Press. OUP, with many titles already in copyright, building Oxford Scholarship Online ...
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Improving the Signal-to-Noise of Nanopore Sensors
... Unlike nanopore formation in TEM mode, where damage is localized in a large radius where imaging was performed prior to nanopore formation ...the nanopore, ensuring that the device area close to the ...
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Zero-Depth Interfacial Nanopore Capillaries
... Several observations suggest the presence of a strong interac- tion between DNA and the walls of the trench, which eventually slows down the translocation of molecules. First, the majority of the translocation events in ...
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Nanopore detection of DNA molecules in magnesium chloride solutions
... As we know, counterions in solutions can bind to DNA molecules, which may provide a drag force on the DNA and reduce the translocation speed. Dekker's group found that DNA translocation time in LiCl salt solution is ...
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A Protein Nanopore Based Approach for Bacteria Sensing
... α-HL nanopore in Fig. 2. In the closed vicinity of a single nanopore inserted in a lipid membrane, whose electric potential on the trans side is negatively biased, the trans-added negatively charged ...
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The Oxford Handbook of Environmental History
... the Oxford Handbook series for historical studies include other relatively new areas such as food history, oral history, medicine and consumption (all published in 2012), as well as staples such as early modern ...
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Analytical Studies in World Music, edited by Michael Tenzer. Oxford: Oxford University Press, 2006.
... In Chapter 9, Robert Morris explores the treatment of mode (raga) and form (varnam) in a South Indian composition “Valachi Vacchi.” This extremely thorough analysis utilizes many Indi[r] ...
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