Phylogenetic Analysis o f ITS Sequences
A phylogenetic analysis of Apostasioideae (Orchidaceae) based on ITS, trn L-F and mat K sequences
... Our phylogenetic results, however, contradicted the conclusion of Garay (1972), who found no close relation- ship between the two genera based on mor- phological ...Our analysis supports the subdivision of ...
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Phylogenetic relationships in Ranunculus species (Ranunculaceae) based on nrDNA ITS and cpDNA trnL-F sequences
... molecular phylogenetic studies of Ranunculus, among which the most important utilized cpDNA restriction sites (Johansson, 1998), cpDNA matK/trnK sequences of mainly European species (Paun et ...nrDNA ...
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The evolution of Araliaceae : a phylogenetic analysis based on ITS sequences of nuclear ribosomal DNA
... simony analysis (weighting transversions over tran- sitions ...this analysis is very similar to that in which gaps were treated as new charac- ters, differing only in the relative position of the ...
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Phylogenetic analysis of isolated biofuel yeasts based on 5.8S-ITS rDNA and D1/D2 26S rDNA sequences
... RFLP analysis of the 5.8S-ITS rDNA, the sequence of the 5.8S-ITS rDNA region and the sequence of the D1/D2 domain of the 26S rRNA gene were applied for accurate ...RFLP analysis of ...
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leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences
... thousand sequences may be analyzed at a ...laboratories. Its main advantages, relatively to comparable systems are: i) the use of a broad set of databases covering diverse markers with various degrees of ...
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Phylogenetic analysis of Polystigma and its relationship to Phyllachorales
... for ITS, 555bp for LSU, and 954bp for ...DNA sequences generated for ...SSU, ITS, or LSU se- quences of ...identical sequences (data not shown). Phylogenetic analyses showed that the ...
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Phylogenetic relationships in the Lejeuneaceae (Hepaticae) inferred using ITS sequences of nuclear ribosomal DNA
... of phylogenetic relationships within the family Lejeuneaceae using sequences of the complete nrITS region and combining molecular and morphological ...molecular analysis was very ...the ITS ...
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Phylogenetic Analysis of Channa Species of Manipur Based on Mitochondrial Cytochrome b Gene Sequences
... possess large scales on their heads and eyes being located in the dorsoventral position on the anterior part of the head. The channidae are represented by 38 valid species across its natural range from Africa to ...
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PHYLOGENETIC ANALYSIS
... typing its name, which automatically causes the data to be read from a file called ‘‘infile’’ or a file name you specify if no infile ...sequence analysis programs offer the ability to export ...
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Analysis of correlated mutations, stalk motifs, and phylogenetic relationship of the 2009 influenza A virus neuraminidase sequences
... 149 151 152 188 189 221 223 225 228 263 321 365 368 369 386 389 Figure 2. This plot shows the residues involved in the two networks of co-mutations with an arch to indicate the correlation between co-mutations. Three ...
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Use of tuf Sequences for Genus Specific PCR Detection and Phylogenetic Analysis of 28 Streptococcal Species
... extensive phylogenetic analysis, which was generally in agreement with phylogeny determined on the basis of 16S rRNA gene ...of its higher level of species-specific genetic ...
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Phylogenetic relationships of Gomphillaceae and Asterothyriaceae: evidence from a combined Bayesian analysis of nuclear and mitochondrial sequences
... Our analysis confirms that Gomphillaceae and Aster- othyriaceae (here represented by the single species Asterothyrium longisporum) are closely related and form a monophyletic lineage that is part of the Os- ...
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Sequences and Phylogenetic Analysis of Envelope (E) Gene of Iranian Infectious Bronchitis Virus Isolates in Iran
... The 3c gene encodes the envelope protein, which plays an important role in budding and assembly of virion (5). The third (S, M) critical membrane-bound constituent of the virion is the small envelope (E) protein. E was ...
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Phylogenetic inferences of Nepenthes species in Peninsular Malaysia revealed by chloroplast (trnL intron) and nuclear (ITS) DNA sequences
... Sequence analysis ClustalX Multiple Sequence Alignment programme was used to align DNA sequences using the default set- ...the phylogenetic analyses. The DNA sequences of the ITS region ...
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Phellinus noxius: molecular diversity among isolates from Taiwan and its phylogenetic relationship with other species of Phellinus based on sequences of the ITS region
... The ITS sequences of 58 isolates belonging to 39 species of Phellinus retrieved from GenBank and seven ...of ITS sequences from Taiwan were used in the analysis of the ...
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Phylogenetic relationships of Heterotrigona itama in Malaysia based on COI DNA sequences
... the phylogenetic relationship scenario among selected localities of ...phylogenetic analysis. The 489 bp mitochondrial DNA of COI sequences was generated for phylogenetic tree ...
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Phylogenetic Analysis of Polyomavirus BK Sequences
... a phylogenetic whole-genome approach to examine the pattern of diversity and evolutionary relationships between 45 BKV strains isolated from multiple clinical ...This analysis supports the classification of ...
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A computational analysis of the phylogenetic trees of some eukaryotes sequences
... INTRODUCTION Bioinformatics is the application of information technology to the analysis, organization, management and distribution of biological data in order to answer complex biological questions. Bio computing ...
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Phylogenetic Analysis of 16S rDNA Sequences of Pediococcus acidilactici TISTR 2309:
... Three phylogenetic trees derived from the Maximum Likelihood, Neighbor-Joining and Maximum Pasimony methods, were compared in order to find the relationship of the strains constructed by each ...from ...
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Analysis of Comparative Phylogenetic Story by Using Autosomal Markers and Mitochondrial Sequences
... network analysis was used first to create a skeleton which was based on the most frequent haplotypes of the nine clades of Liu's network [20] and the three additional clades (D, G and F) of ...B, F ...
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